data_5AXS # _model_server_result.job_id DzlA9Y1cPG-Z9YDXxW4rsg _model_server_result.datetime_utc '2024-12-12 20:32:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5axs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5AXS # _exptl.entry_id 5AXS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5AXS _cell.length_a 180.878 _cell.length_b 180.878 _cell.length_c 180.878 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AXS _symmetry.cell_setting ? _symmetry.Int_Tables_number 209 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'F 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 13 'crystal symmetry operation' 13_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 14 'crystal symmetry operation' 14_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 15 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 16 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 17 'crystal symmetry operation' 17_555 x,z,-y 1 0 0 0 0 1 0 -1 0 0 0 0 18 'crystal symmetry operation' 18_555 -x,z,y -1 0 0 0 0 1 0 1 0 0 0 0 19 'crystal symmetry operation' 19_555 -x,-z,-y -1 0 0 0 0 -1 0 -1 0 0 0 0 20 'crystal symmetry operation' 20_555 x,-z,y 1 0 0 0 0 -1 0 1 0 0 0 0 21 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 22 'crystal symmetry operation' 22_555 z,-y,x 0 0 1 0 -1 0 1 0 0 0 0 0 23 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 24 'crystal symmetry operation' 24_555 -z,-y,-x 0 0 -1 0 -1 0 -1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 119 A CYS 119 1_555 B C4 4LF . A 4LF 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? metalc ? metalc1 A OD1 ASP 80 A ASP 80 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc2 A OD2 ASP 80 A ASP 80 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc3 A OD1 ASP 80 A ASP 80 1_555 C CD CD . A CD 202 72_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc4 A OD2 ASP 80 A ASP 80 1_555 C CD CD . A CD 202 72_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc5 A NE2 GLN 82 A GLN 82 1_555 C CD CD . A CD 202 22_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc6 A OD1 ASP 127 A ASP 127 1_555 D CD CD . A CD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc7 A OD1 ASP 127 A ASP 127 1_555 D CD CD . A CD 203 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc8 A OE1 GLU 130 A GLU 130 1_555 F CD CD . A CD 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc9 A OE1 GLU 130 A GLU 130 1_555 F CD CD . A CD 205 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc10 B O6 4LF . A 4LF 201 1_555 E CD CD . A CD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc11 B O5 4LF . A 4LF 201 1_555 E CD CD . A CD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc12 B O6 4LF . A 4LF 201 1_555 E CD CD . A CD 204 9_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc13 B O5 4LF . A 4LF 201 1_555 E CD CD . A CD 204 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc14 D CD CD . A CD 203 1_555 L O HOH . A HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc15 D CD CD . A CD 203 1_555 L O HOH . A HOH 311 9_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc16 G CD CD . A CD 206 1_555 L O HOH . A HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc17 G CD CD . A CD 206 1_555 L O HOH . A HOH 311 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5AXS _atom_sites.fract_transf_matrix[1][1] 0.005529 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005529 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005529 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4LF A 1 201 119 4LF CC5 . C 3 CD A 1 202 1 CD CD . D 3 CD A 1 203 2 CD CD . E 3 CD A 1 204 3 CD CD . F 3 CD A 1 205 4 CD CD . G 3 CD A 1 206 5 CD CD . H 4 SO4 A 1 207 1 SO4 SO4 . I 5 GOL A 1 208 1 GOL GOL . J 5 GOL A 1 209 2 GOL GOL . K 5 GOL A 1 210 3 GOL GOL . L 6 HOH A 1 301 117 HOH HOH . L 6 HOH A 2 302 164 HOH HOH . L 6 HOH A 3 303 79 HOH HOH . L 6 HOH A 4 304 161 HOH HOH . L 6 HOH A 5 305 77 HOH HOH . L 6 HOH A 6 306 57 HOH HOH . L 6 HOH A 7 307 106 HOH HOH . L 6 HOH A 8 308 56 HOH HOH . L 6 HOH A 9 309 47 HOH HOH . L 6 HOH A 10 310 104 HOH HOH . L 6 HOH A 11 311 115 HOH HOH . L 6 HOH A 12 312 13 HOH HOH . L 6 HOH A 13 313 136 HOH HOH . L 6 HOH A 14 314 26 HOH HOH . L 6 HOH A 15 315 96 HOH HOH . L 6 HOH A 16 316 141 HOH HOH . L 6 HOH A 17 317 165 HOH HOH . L 6 HOH A 18 318 30 HOH HOH . L 6 HOH A 19 319 82 HOH HOH . L 6 HOH A 20 320 35 HOH HOH . L 6 HOH A 21 321 87 HOH HOH . L 6 HOH A 22 322 52 HOH HOH . L 6 HOH A 23 323 15 HOH HOH . L 6 HOH A 24 324 94 HOH HOH . L 6 HOH A 25 325 53 HOH HOH . L 6 HOH A 26 326 89 HOH HOH . L 6 HOH A 27 327 9 HOH HOH . L 6 HOH A 28 328 4 HOH HOH . L 6 HOH A 29 329 58 HOH HOH . L 6 HOH A 30 330 40 HOH HOH . L 6 HOH A 31 331 50 HOH HOH . L 6 HOH A 32 332 18 HOH HOH . L 6 HOH A 33 333 93 HOH HOH . L 6 HOH A 34 334 142 HOH HOH . L 6 HOH A 35 335 109 HOH HOH . L 6 HOH A 36 336 124 HOH HOH . L 6 HOH A 37 337 78 HOH HOH . L 6 HOH A 38 338 14 HOH HOH . L 6 HOH A 39 339 8 HOH HOH . L 6 HOH A 40 340 107 HOH HOH . L 6 HOH A 41 341 49 HOH HOH . L 6 HOH A 42 342 16 HOH HOH . L 6 HOH A 43 343 5 HOH HOH . L 6 HOH A 44 344 100 HOH HOH . L 6 HOH A 45 345 46 HOH HOH . L 6 HOH A 46 346 140 HOH HOH . L 6 HOH A 47 347 24 HOH HOH . L 6 HOH A 48 348 2 HOH HOH . L 6 HOH A 49 349 48 HOH HOH . L 6 HOH A 50 350 112 HOH HOH . L 6 HOH A 51 351 25 HOH HOH . L 6 HOH A 52 352 44 HOH HOH . L 6 HOH A 53 353 130 HOH HOH . L 6 HOH A 54 354 31 HOH HOH . L 6 HOH A 55 355 113 HOH HOH . L 6 HOH A 56 356 12 HOH HOH . L 6 HOH A 57 357 69 HOH HOH . L 6 HOH A 58 358 29 HOH HOH . L 6 HOH A 59 359 33 HOH HOH . L 6 HOH A 60 360 23 HOH HOH . L 6 HOH A 61 361 6 HOH HOH . L 6 HOH A 62 362 7 HOH HOH . L 6 HOH A 63 363 62 HOH HOH . L 6 HOH A 64 364 54 HOH HOH . L 6 HOH A 65 365 37 HOH HOH . L 6 HOH A 66 366 19 HOH HOH . L 6 HOH A 67 367 41 HOH HOH . L 6 HOH A 68 368 166 HOH HOH . L 6 HOH A 69 369 143 HOH HOH . L 6 HOH A 70 370 65 HOH HOH . L 6 HOH A 71 371 1 HOH HOH . L 6 HOH A 72 372 102 HOH HOH . L 6 HOH A 73 373 59 HOH HOH . L 6 HOH A 74 374 55 HOH HOH . L 6 HOH A 75 375 139 HOH HOH . L 6 HOH A 76 376 131 HOH HOH . L 6 HOH A 77 377 42 HOH HOH . L 6 HOH A 78 378 66 HOH HOH . L 6 HOH A 79 379 98 HOH HOH . L 6 HOH A 80 380 123 HOH HOH . L 6 HOH A 81 381 144 HOH HOH . L 6 HOH A 82 382 17 HOH HOH . L 6 HOH A 83 383 27 HOH HOH . L 6 HOH A 84 384 32 HOH HOH . L 6 HOH A 85 385 114 HOH HOH . L 6 HOH A 86 386 22 HOH HOH . L 6 HOH A 87 387 99 HOH HOH . L 6 HOH A 88 388 3 HOH HOH . L 6 HOH A 89 389 81 HOH HOH . L 6 HOH A 90 390 20 HOH HOH . L 6 HOH A 91 391 72 HOH HOH . L 6 HOH A 92 392 85 HOH HOH . L 6 HOH A 93 393 163 HOH HOH . L 6 HOH A 94 394 28 HOH HOH . L 6 HOH A 95 395 152 HOH HOH . L 6 HOH A 96 396 137 HOH HOH . L 6 HOH A 97 397 21 HOH HOH . L 6 HOH A 98 398 36 HOH HOH . L 6 HOH A 99 399 91 HOH HOH . L 6 HOH A 100 400 67 HOH HOH . L 6 HOH A 101 401 38 HOH HOH . L 6 HOH A 102 402 97 HOH HOH . L 6 HOH A 103 403 125 HOH HOH . L 6 HOH A 104 404 92 HOH HOH . L 6 HOH A 105 405 34 HOH HOH . L 6 HOH A 106 406 51 HOH HOH . L 6 HOH A 107 407 83 HOH HOH . L 6 HOH A 108 408 95 HOH HOH . L 6 HOH A 109 409 90 HOH HOH . L 6 HOH A 110 410 86 HOH HOH . L 6 HOH A 111 411 105 HOH HOH . L 6 HOH A 112 412 71 HOH HOH . L 6 HOH A 113 413 147 HOH HOH . L 6 HOH A 114 414 80 HOH HOH . L 6 HOH A 115 415 68 HOH HOH . L 6 HOH A 116 416 103 HOH HOH . L 6 HOH A 117 417 84 HOH HOH . L 6 HOH A 118 418 76 HOH HOH . L 6 HOH A 119 419 75 HOH HOH . L 6 HOH A 120 420 133 HOH HOH . L 6 HOH A 121 421 145 HOH HOH . L 6 HOH A 122 422 10 HOH HOH . L 6 HOH A 123 423 118 HOH HOH . L 6 HOH A 124 424 132 HOH HOH . L 6 HOH A 125 425 64 HOH HOH . L 6 HOH A 126 426 154 HOH HOH . L 6 HOH A 127 427 63 HOH HOH . L 6 HOH A 128 428 127 HOH HOH . L 6 HOH A 129 429 39 HOH HOH . L 6 HOH A 130 430 155 HOH HOH . L 6 HOH A 131 431 101 HOH HOH . L 6 HOH A 132 432 129 HOH HOH . L 6 HOH A 133 433 74 HOH HOH . L 6 HOH A 134 434 128 HOH HOH . L 6 HOH A 135 435 11 HOH HOH . L 6 HOH A 136 436 151 HOH HOH . L 6 HOH A 137 437 110 HOH HOH . L 6 HOH A 138 438 61 HOH HOH . L 6 HOH A 139 439 146 HOH HOH . L 6 HOH A 140 440 126 HOH HOH . L 6 HOH A 141 441 116 HOH HOH . L 6 HOH A 142 442 138 HOH HOH . L 6 HOH A 143 443 149 HOH HOH . L 6 HOH A 144 444 162 HOH HOH . L 6 HOH A 145 445 45 HOH HOH . L 6 HOH A 146 446 148 HOH HOH . L 6 HOH A 147 447 70 HOH HOH . L 6 HOH A 148 448 135 HOH HOH . L 6 HOH A 149 449 43 HOH HOH . L 6 HOH A 150 450 111 HOH HOH . L 6 HOH A 151 451 156 HOH HOH . L 6 HOH A 152 452 150 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 47.965 _atom_site.Cartn_y 0 _atom_site.Cartn_z 42.469 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 23.96 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 1 #