data_5AXS
#
_model_server_result.job_id            DzlA9Y1cPG-Z9YDXxW4rsg 
_model_server_result.datetime_utc      '2024-12-12 20:32:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5axs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    5AXS 
#
_exptl.entry_id    5AXS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              112.411 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CADMIUM ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5AXS 
_cell.length_a            180.878 
_cell.length_b            180.878 
_cell.length_c            180.878 
_cell.Z_PDB               96 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5AXS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        209 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'F 4 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    24-meric 
_pdbx_struct_assembly.oligomeric_count      24 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 
6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 
7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 
8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 
9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 
10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 
11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 
12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 
13 'crystal symmetry operation' 13_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
14 'crystal symmetry operation' 14_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 
15 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 
16 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 
17 'crystal symmetry operation' 17_555 x,z,-y 1 0 0 0 0 1 0 -1 0 0 0 0 
18 'crystal symmetry operation' 18_555 -x,z,y -1 0 0 0 0 1 0 1 0 0 0 0 
19 'crystal symmetry operation' 19_555 -x,-z,-y -1 0 0 0 0 -1 0 -1 0 0 0 0 
20 'crystal symmetry operation' 20_555 x,-z,y 1 0 0 0 0 -1 0 1 0 0 0 0 
21 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 
22 'crystal symmetry operation' 22_555 z,-y,x 0 0 1 0 -1 0 1 0 0 0 0 0 
23 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 
24 'crystal symmetry operation' 24_555 -z,-y,-x 0 0 -1 0 -1 0 -1 0 0 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 119 A CYS 119 1_555 B C4 4LF . A 4LF 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? 
metalc ? metalc1 A OD1 ASP 80 A ASP 80 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? 
metalc ? metalc2 A OD2 ASP 80 A ASP 80 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc3 A OD1 ASP 80 A ASP 80 1_555 C CD CD . A CD 202 72_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc4 A OD2 ASP 80 A ASP 80 1_555 C CD CD . A CD 202 72_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? 
metalc ? metalc5 A NE2 GLN 82 A GLN 82 1_555 C CD CD . A CD 202 22_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc6 A OD1 ASP 127 A ASP 127 1_555 D CD CD . A CD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? 
metalc ? metalc7 A OD1 ASP 127 A ASP 127 1_555 D CD CD . A CD 203 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? 
metalc ? metalc8 A OE1 GLU 130 A GLU 130 1_555 F CD CD . A CD 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? 
metalc ? metalc9 A OE1 GLU 130 A GLU 130 1_555 F CD CD . A CD 205 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? 
metalc ? metalc10 B O6 4LF . A 4LF 201 1_555 E CD CD . A CD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
metalc ? metalc11 B O5 4LF . A 4LF 201 1_555 E CD CD . A CD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc12 B O6 4LF . A 4LF 201 1_555 E CD CD . A CD 204 9_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
metalc ? metalc13 B O5 4LF . A 4LF 201 1_555 E CD CD . A CD 204 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
metalc ? metalc14 D CD CD . A CD 203 1_555 L O HOH . A HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc15 D CD CD . A CD 203 1_555 L O HOH . A HOH 311 9_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
metalc ? metalc16 G CD CD . A CD 206 1_555 L O HOH . A HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc17 G CD CD . A CD 206 1_555 L O HOH . A HOH 311 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
#
_chem_comp.formula           'Cd 2' 
_chem_comp.formula_weight    112.411 
_chem_comp.id                CD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CADMIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5AXS 
_atom_sites.fract_transf_matrix[1][1]    0.005529 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005529 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005529 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 4LF A 1 201 119 4LF CC5 . 
C 3 CD A 1 202 1 CD CD . 
D 3 CD A 1 203 2 CD CD . 
E 3 CD A 1 204 3 CD CD . 
F 3 CD A 1 205 4 CD CD . 
G 3 CD A 1 206 5 CD CD . 
H 4 SO4 A 1 207 1 SO4 SO4 . 
I 5 GOL A 1 208 1 GOL GOL . 
J 5 GOL A 1 209 2 GOL GOL . 
K 5 GOL A 1 210 3 GOL GOL . 
L 6 HOH A 1 301 117 HOH HOH . 
L 6 HOH A 2 302 164 HOH HOH . 
L 6 HOH A 3 303 79 HOH HOH . 
L 6 HOH A 4 304 161 HOH HOH . 
L 6 HOH A 5 305 77 HOH HOH . 
L 6 HOH A 6 306 57 HOH HOH . 
L 6 HOH A 7 307 106 HOH HOH . 
L 6 HOH A 8 308 56 HOH HOH . 
L 6 HOH A 9 309 47 HOH HOH . 
L 6 HOH A 10 310 104 HOH HOH . 
L 6 HOH A 11 311 115 HOH HOH . 
L 6 HOH A 12 312 13 HOH HOH . 
L 6 HOH A 13 313 136 HOH HOH . 
L 6 HOH A 14 314 26 HOH HOH . 
L 6 HOH A 15 315 96 HOH HOH . 
L 6 HOH A 16 316 141 HOH HOH . 
L 6 HOH A 17 317 165 HOH HOH . 
L 6 HOH A 18 318 30 HOH HOH . 
L 6 HOH A 19 319 82 HOH HOH . 
L 6 HOH A 20 320 35 HOH HOH . 
L 6 HOH A 21 321 87 HOH HOH . 
L 6 HOH A 22 322 52 HOH HOH . 
L 6 HOH A 23 323 15 HOH HOH . 
L 6 HOH A 24 324 94 HOH HOH . 
L 6 HOH A 25 325 53 HOH HOH . 
L 6 HOH A 26 326 89 HOH HOH . 
L 6 HOH A 27 327 9 HOH HOH . 
L 6 HOH A 28 328 4 HOH HOH . 
L 6 HOH A 29 329 58 HOH HOH . 
L 6 HOH A 30 330 40 HOH HOH . 
L 6 HOH A 31 331 50 HOH HOH . 
L 6 HOH A 32 332 18 HOH HOH . 
L 6 HOH A 33 333 93 HOH HOH . 
L 6 HOH A 34 334 142 HOH HOH . 
L 6 HOH A 35 335 109 HOH HOH . 
L 6 HOH A 36 336 124 HOH HOH . 
L 6 HOH A 37 337 78 HOH HOH . 
L 6 HOH A 38 338 14 HOH HOH . 
L 6 HOH A 39 339 8 HOH HOH . 
L 6 HOH A 40 340 107 HOH HOH . 
L 6 HOH A 41 341 49 HOH HOH . 
L 6 HOH A 42 342 16 HOH HOH . 
L 6 HOH A 43 343 5 HOH HOH . 
L 6 HOH A 44 344 100 HOH HOH . 
L 6 HOH A 45 345 46 HOH HOH . 
L 6 HOH A 46 346 140 HOH HOH . 
L 6 HOH A 47 347 24 HOH HOH . 
L 6 HOH A 48 348 2 HOH HOH . 
L 6 HOH A 49 349 48 HOH HOH . 
L 6 HOH A 50 350 112 HOH HOH . 
L 6 HOH A 51 351 25 HOH HOH . 
L 6 HOH A 52 352 44 HOH HOH . 
L 6 HOH A 53 353 130 HOH HOH . 
L 6 HOH A 54 354 31 HOH HOH . 
L 6 HOH A 55 355 113 HOH HOH . 
L 6 HOH A 56 356 12 HOH HOH . 
L 6 HOH A 57 357 69 HOH HOH . 
L 6 HOH A 58 358 29 HOH HOH . 
L 6 HOH A 59 359 33 HOH HOH . 
L 6 HOH A 60 360 23 HOH HOH . 
L 6 HOH A 61 361 6 HOH HOH . 
L 6 HOH A 62 362 7 HOH HOH . 
L 6 HOH A 63 363 62 HOH HOH . 
L 6 HOH A 64 364 54 HOH HOH . 
L 6 HOH A 65 365 37 HOH HOH . 
L 6 HOH A 66 366 19 HOH HOH . 
L 6 HOH A 67 367 41 HOH HOH . 
L 6 HOH A 68 368 166 HOH HOH . 
L 6 HOH A 69 369 143 HOH HOH . 
L 6 HOH A 70 370 65 HOH HOH . 
L 6 HOH A 71 371 1 HOH HOH . 
L 6 HOH A 72 372 102 HOH HOH . 
L 6 HOH A 73 373 59 HOH HOH . 
L 6 HOH A 74 374 55 HOH HOH . 
L 6 HOH A 75 375 139 HOH HOH . 
L 6 HOH A 76 376 131 HOH HOH . 
L 6 HOH A 77 377 42 HOH HOH . 
L 6 HOH A 78 378 66 HOH HOH . 
L 6 HOH A 79 379 98 HOH HOH . 
L 6 HOH A 80 380 123 HOH HOH . 
L 6 HOH A 81 381 144 HOH HOH . 
L 6 HOH A 82 382 17 HOH HOH . 
L 6 HOH A 83 383 27 HOH HOH . 
L 6 HOH A 84 384 32 HOH HOH . 
L 6 HOH A 85 385 114 HOH HOH . 
L 6 HOH A 86 386 22 HOH HOH . 
L 6 HOH A 87 387 99 HOH HOH . 
L 6 HOH A 88 388 3 HOH HOH . 
L 6 HOH A 89 389 81 HOH HOH . 
L 6 HOH A 90 390 20 HOH HOH . 
L 6 HOH A 91 391 72 HOH HOH . 
L 6 HOH A 92 392 85 HOH HOH . 
L 6 HOH A 93 393 163 HOH HOH . 
L 6 HOH A 94 394 28 HOH HOH . 
L 6 HOH A 95 395 152 HOH HOH . 
L 6 HOH A 96 396 137 HOH HOH . 
L 6 HOH A 97 397 21 HOH HOH . 
L 6 HOH A 98 398 36 HOH HOH . 
L 6 HOH A 99 399 91 HOH HOH . 
L 6 HOH A 100 400 67 HOH HOH . 
L 6 HOH A 101 401 38 HOH HOH . 
L 6 HOH A 102 402 97 HOH HOH . 
L 6 HOH A 103 403 125 HOH HOH . 
L 6 HOH A 104 404 92 HOH HOH . 
L 6 HOH A 105 405 34 HOH HOH . 
L 6 HOH A 106 406 51 HOH HOH . 
L 6 HOH A 107 407 83 HOH HOH . 
L 6 HOH A 108 408 95 HOH HOH . 
L 6 HOH A 109 409 90 HOH HOH . 
L 6 HOH A 110 410 86 HOH HOH . 
L 6 HOH A 111 411 105 HOH HOH . 
L 6 HOH A 112 412 71 HOH HOH . 
L 6 HOH A 113 413 147 HOH HOH . 
L 6 HOH A 114 414 80 HOH HOH . 
L 6 HOH A 115 415 68 HOH HOH . 
L 6 HOH A 116 416 103 HOH HOH . 
L 6 HOH A 117 417 84 HOH HOH . 
L 6 HOH A 118 418 76 HOH HOH . 
L 6 HOH A 119 419 75 HOH HOH . 
L 6 HOH A 120 420 133 HOH HOH . 
L 6 HOH A 121 421 145 HOH HOH . 
L 6 HOH A 122 422 10 HOH HOH . 
L 6 HOH A 123 423 118 HOH HOH . 
L 6 HOH A 124 424 132 HOH HOH . 
L 6 HOH A 125 425 64 HOH HOH . 
L 6 HOH A 126 426 154 HOH HOH . 
L 6 HOH A 127 427 63 HOH HOH . 
L 6 HOH A 128 428 127 HOH HOH . 
L 6 HOH A 129 429 39 HOH HOH . 
L 6 HOH A 130 430 155 HOH HOH . 
L 6 HOH A 131 431 101 HOH HOH . 
L 6 HOH A 132 432 129 HOH HOH . 
L 6 HOH A 133 433 74 HOH HOH . 
L 6 HOH A 134 434 128 HOH HOH . 
L 6 HOH A 135 435 11 HOH HOH . 
L 6 HOH A 136 436 151 HOH HOH . 
L 6 HOH A 137 437 110 HOH HOH . 
L 6 HOH A 138 438 61 HOH HOH . 
L 6 HOH A 139 439 146 HOH HOH . 
L 6 HOH A 140 440 126 HOH HOH . 
L 6 HOH A 141 441 116 HOH HOH . 
L 6 HOH A 142 442 138 HOH HOH . 
L 6 HOH A 143 443 149 HOH HOH . 
L 6 HOH A 144 444 162 HOH HOH . 
L 6 HOH A 145 445 45 HOH HOH . 
L 6 HOH A 146 446 148 HOH HOH . 
L 6 HOH A 147 447 70 HOH HOH . 
L 6 HOH A 148 448 135 HOH HOH . 
L 6 HOH A 149 449 43 HOH HOH . 
L 6 HOH A 150 450 111 HOH HOH . 
L 6 HOH A 151 451 156 HOH HOH . 
L 6 HOH A 152 452 150 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CD 
_atom_site.label_atom_id         CD 
_atom_site.label_comp_id         CD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               47.965 
_atom_site.Cartn_y               0 
_atom_site.Cartn_z               42.469 
_atom_site.occupancy             0.5 
_atom_site.B_iso_or_equiv        23.96 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CD 
_atom_site.auth_comp_id          CD 
_atom_site.auth_seq_id           202 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          19 
_model_server_stats.element_count           1 
#