data_5AXU # _model_server_result.job_id cRWX8qhcKTcxK3NPXF4ilQ _model_server_result.datetime_utc '2025-07-07 08:29:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5axu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5AXU # _exptl.entry_id 5AXU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5AXU _cell.length_a 103.229 _cell.length_b 103.229 _cell.length_c 103.229 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AXU _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 1 1_555 A N ALA 2 A ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? metalc ? metalc1 B MG MG . A MG 301 1_555 C O2B ATP . A ATP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc2 B MG MG . A MG 301 1_555 C O3G ATP . A ATP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc3 B MG MG . A MG 301 1_555 C O2A ATP . A ATP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 76 n n PG O2G ATP sing 77 n n PG O3G ATP sing 78 n n PG O3B ATP sing 79 n n O2G HOG2 ATP sing 80 n n O3G HOG3 ATP sing 81 n n PB O1B ATP doub 82 n n PB O2B ATP sing 83 n n PB O3B ATP sing 84 n n PB O3A ATP sing 85 n n O2B HOB2 ATP sing 86 n n PA O1A ATP doub 87 n n PA O2A ATP sing 88 n n PA O3A ATP sing 89 n n PA O5' ATP sing 90 n n O2A HOA2 ATP sing 91 n n O5' C5' ATP sing 92 n n C5' C4' ATP sing 93 n n C5' "H5'1" ATP sing 94 n n C5' "H5'2" ATP sing 95 n n C4' O4' ATP sing 96 n n C4' C3' ATP sing 97 n n C4' H4' ATP sing 98 n n O4' C1' ATP sing 99 n n C3' O3' ATP sing 100 n n C3' C2' ATP sing 101 n n C3' H3' ATP sing 102 n n O3' HO3' ATP sing 103 n n C2' O2' ATP sing 104 n n C2' C1' ATP sing 105 n n C2' H2' ATP sing 106 n n O2' HO2' ATP sing 107 n n C1' N9 ATP sing 108 n n C1' H1' ATP sing 109 n n N9 C8 ATP sing 110 n y N9 C4 ATP sing 111 n y C8 N7 ATP doub 112 n y C8 H8 ATP sing 113 n n N7 C5 ATP sing 114 n y C5 C6 ATP sing 115 n y C5 C4 ATP doub 116 n y C6 N6 ATP sing 117 n n C6 N1 ATP doub 118 n y N6 HN61 ATP sing 119 n n N6 HN62 ATP sing 120 n n N1 C2 ATP sing 121 n y C2 N3 ATP doub 122 n y C2 H2 ATP sing 123 n n N3 C4 ATP sing 124 n y # _atom_sites.entry_id 5AXU _atom_sites.fract_transf_matrix[1][1] 0.009687 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009687 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009687 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 301 301 MG MG . C 3 ATP A 1 302 302 ATP ATP . D 4 CTP A 1 303 303 CTP CTP . E 5 EDO A 1 304 304 EDO EDO . F 5 EDO A 1 305 305 EDO EDO . G 5 EDO A 1 306 306 EDO EDO . H 6 HOH A 1 401 538 HOH HOH . H 6 HOH A 2 402 456 HOH HOH . H 6 HOH A 3 403 505 HOH HOH . H 6 HOH A 4 404 435 HOH HOH . H 6 HOH A 5 405 426 HOH HOH . H 6 HOH A 6 406 537 HOH HOH . H 6 HOH A 7 407 432 HOH HOH . H 6 HOH A 8 408 475 HOH HOH . H 6 HOH A 9 409 422 HOH HOH . H 6 HOH A 10 410 459 HOH HOH . H 6 HOH A 11 411 509 HOH HOH . H 6 HOH A 12 412 421 HOH HOH . H 6 HOH A 13 413 428 HOH HOH . H 6 HOH A 14 414 427 HOH HOH . H 6 HOH A 15 415 455 HOH HOH . H 6 HOH A 16 416 407 HOH HOH . H 6 HOH A 17 417 404 HOH HOH . H 6 HOH A 18 418 478 HOH HOH . H 6 HOH A 19 419 462 HOH HOH . H 6 HOH A 20 420 474 HOH HOH . H 6 HOH A 21 421 484 HOH HOH . H 6 HOH A 22 422 414 HOH HOH . H 6 HOH A 23 423 472 HOH HOH . H 6 HOH A 24 424 406 HOH HOH . H 6 HOH A 25 425 450 HOH HOH . H 6 HOH A 26 426 408 HOH HOH . H 6 HOH A 27 427 402 HOH HOH . H 6 HOH A 28 428 433 HOH HOH . H 6 HOH A 29 429 503 HOH HOH . H 6 HOH A 30 430 451 HOH HOH . H 6 HOH A 31 431 466 HOH HOH . H 6 HOH A 32 432 463 HOH HOH . H 6 HOH A 33 433 413 HOH HOH . H 6 HOH A 34 434 445 HOH HOH . H 6 HOH A 35 435 452 HOH HOH . H 6 HOH A 36 436 431 HOH HOH . H 6 HOH A 37 437 411 HOH HOH . H 6 HOH A 38 438 417 HOH HOH . H 6 HOH A 39 439 492 HOH HOH . H 6 HOH A 40 440 523 HOH HOH . H 6 HOH A 41 441 415 HOH HOH . H 6 HOH A 42 442 470 HOH HOH . H 6 HOH A 43 443 437 HOH HOH . H 6 HOH A 44 444 419 HOH HOH . H 6 HOH A 45 445 465 HOH HOH . H 6 HOH A 46 446 521 HOH HOH . H 6 HOH A 47 447 522 HOH HOH . H 6 HOH A 48 448 447 HOH HOH . H 6 HOH A 49 449 429 HOH HOH . H 6 HOH A 50 450 486 HOH HOH . H 6 HOH A 51 451 461 HOH HOH . H 6 HOH A 52 452 446 HOH HOH . H 6 HOH A 53 453 476 HOH HOH . H 6 HOH A 54 454 520 HOH HOH . H 6 HOH A 55 455 507 HOH HOH . H 6 HOH A 56 456 439 HOH HOH . H 6 HOH A 57 457 412 HOH HOH . H 6 HOH A 58 458 496 HOH HOH . H 6 HOH A 59 459 405 HOH HOH . H 6 HOH A 60 460 527 HOH HOH . H 6 HOH A 61 461 482 HOH HOH . H 6 HOH A 62 462 442 HOH HOH . H 6 HOH A 63 463 518 HOH HOH . H 6 HOH A 64 464 416 HOH HOH . H 6 HOH A 65 465 457 HOH HOH . H 6 HOH A 66 466 430 HOH HOH . H 6 HOH A 67 467 495 HOH HOH . H 6 HOH A 68 468 501 HOH HOH . H 6 HOH A 69 469 460 HOH HOH . H 6 HOH A 70 470 436 HOH HOH . H 6 HOH A 71 471 514 HOH HOH . H 6 HOH A 72 472 512 HOH HOH . H 6 HOH A 73 473 531 HOH HOH . H 6 HOH A 74 474 513 HOH HOH . H 6 HOH A 75 475 418 HOH HOH . H 6 HOH A 76 476 425 HOH HOH . H 6 HOH A 77 477 510 HOH HOH . H 6 HOH A 78 478 403 HOH HOH . H 6 HOH A 79 479 420 HOH HOH . H 6 HOH A 80 480 477 HOH HOH . H 6 HOH A 81 481 410 HOH HOH . H 6 HOH A 82 482 499 HOH HOH . H 6 HOH A 83 483 409 HOH HOH . H 6 HOH A 84 484 458 HOH HOH . H 6 HOH A 85 485 485 HOH HOH . H 6 HOH A 86 486 490 HOH HOH . H 6 HOH A 87 487 488 HOH HOH . H 6 HOH A 88 488 401 HOH HOH . H 6 HOH A 89 489 467 HOH HOH . H 6 HOH A 90 490 517 HOH HOH . H 6 HOH A 91 491 487 HOH HOH . H 6 HOH A 92 492 438 HOH HOH . H 6 HOH A 93 493 473 HOH HOH . H 6 HOH A 94 494 468 HOH HOH . H 6 HOH A 95 495 444 HOH HOH . H 6 HOH A 96 496 506 HOH HOH . H 6 HOH A 97 497 494 HOH HOH . H 6 HOH A 98 498 526 HOH HOH . H 6 HOH A 99 499 448 HOH HOH . H 6 HOH A 100 500 504 HOH HOH . H 6 HOH A 101 501 423 HOH HOH . H 6 HOH A 102 502 441 HOH HOH . H 6 HOH A 103 503 440 HOH HOH . H 6 HOH A 104 504 528 HOH HOH . H 6 HOH A 105 505 464 HOH HOH . H 6 HOH A 106 506 489 HOH HOH . H 6 HOH A 107 507 471 HOH HOH . H 6 HOH A 108 508 524 HOH HOH . H 6 HOH A 109 509 434 HOH HOH . H 6 HOH A 110 510 540 HOH HOH . H 6 HOH A 111 511 493 HOH HOH . H 6 HOH A 112 512 443 HOH HOH . H 6 HOH A 113 513 508 HOH HOH . H 6 HOH A 114 514 491 HOH HOH . H 6 HOH A 115 515 469 HOH HOH . H 6 HOH A 116 516 453 HOH HOH . H 6 HOH A 117 517 525 HOH HOH . H 6 HOH A 118 518 502 HOH HOH . H 6 HOH A 119 519 536 HOH HOH . H 6 HOH A 120 520 449 HOH HOH . H 6 HOH A 121 521 479 HOH HOH . H 6 HOH A 122 522 534 HOH HOH . H 6 HOH A 123 523 424 HOH HOH . H 6 HOH A 124 524 498 HOH HOH . H 6 HOH A 125 525 483 HOH HOH . H 6 HOH A 126 526 516 HOH HOH . H 6 HOH A 127 527 481 HOH HOH . H 6 HOH A 128 528 454 HOH HOH . H 6 HOH A 129 529 480 HOH HOH . H 6 HOH A 130 530 532 HOH HOH . H 6 HOH A 131 531 497 HOH HOH . H 6 HOH A 132 532 511 HOH HOH . H 6 HOH A 133 533 500 HOH HOH . H 6 HOH A 134 534 515 HOH HOH . H 6 HOH A 135 535 530 HOH HOH . H 6 HOH A 136 536 535 HOH HOH . H 6 HOH A 137 537 529 HOH HOH . H 6 HOH A 138 538 539 HOH HOH . H 6 HOH A 139 539 519 HOH HOH . H 6 HOH A 140 540 533 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 3 25.021 5.674 53.798 1 42.84 ? PG ATP 302 A 1 HETATM 2 O O1G ATP . . . C 3 24.316 5.65 52.462 1 42.18 ? O1G ATP 302 A 1 HETATM 3 O O2G ATP . . . C 3 24.118 5.419 54.985 1 41.72 ? O2G ATP 302 A 1 HETATM 4 O O3G ATP . . . C 3 25.956 6.851 53.973 1 42.31 ? O3G ATP 302 A 1 HETATM 5 P PB ATP . . . C 3 27.327 4.121 54.553 1 37.68 ? PB ATP 302 A 1 HETATM 6 O O1B ATP . . . C 3 27.411 2.642 54.875 1 33.45 ? O1B ATP 302 A 1 HETATM 7 O O2B ATP . . . C 3 27.459 5.141 55.67 1 36 ? O2B ATP 302 A 1 HETATM 8 O O3B ATP . . . C 3 25.958 4.355 53.717 1 40.07 ? O3B ATP 302 A 1 HETATM 9 P PA ATP . . . C 3 28.813 5.79 52.723 1 39.85 ? PA ATP 302 A 1 HETATM 10 O O1A ATP . . . C 3 28.015 5.922 51.448 1 38.76 ? O1A ATP 302 A 1 HETATM 11 O O2A ATP . . . C 3 28.8 6.896 53.756 1 40.68 ? O2A ATP 302 A 1 HETATM 12 O O3A ATP . . . C 3 28.449 4.376 53.419 1 38.12 ? O3A ATP 302 A 1 HETATM 13 O O5' ATP . . . C 3 30.339 5.513 52.277 1 42.16 ? O5' ATP 302 A 1 HETATM 14 C C5' ATP . . . C 3 30.663 4.391 51.448 1 47.16 ? C5' ATP 302 A 1 HETATM 15 C C4' ATP . . . C 3 32.125 4.463 51.02 1 52.97 ? C4' ATP 302 A 1 HETATM 16 O O4' ATP . . . C 3 32.267 5.436 49.982 1 55.43 ? O4' ATP 302 A 1 HETATM 17 C C3' ATP . . . C 3 33.037 4.893 52.161 1 55.72 ? C3' ATP 302 A 1 HETATM 18 O O3' ATP . . . C 3 34.174 4.024 52.202 1 56.05 ? O3' ATP 302 A 1 HETATM 19 C C2' ATP . . . C 3 33.435 6.332 51.851 1 58.26 ? C2' ATP 302 A 1 HETATM 20 O O2' ATP . . . C 3 34.81 6.584 52.165 1 59.9 ? O2' ATP 302 A 1 HETATM 21 C C1' ATP . . . C 3 33.151 6.498 50.358 1 58.95 ? C1' ATP 302 A 1 HETATM 22 N N9 ATP . . . C 3 32.518 7.803 50.008 1 62.21 ? N9 ATP 302 A 1 HETATM 23 C C8 ATP . . . C 3 31.922 8.672 50.854 1 64.04 ? C8 ATP 302 A 1 HETATM 24 N N7 ATP . . . C 3 31.447 9.763 50.195 1 65 ? N7 ATP 302 A 1 HETATM 25 C C5 ATP . . . C 3 31.737 9.601 48.89 1 65.46 ? C5 ATP 302 A 1 HETATM 26 C C6 ATP . . . C 3 31.524 10.374 47.636 1 66.24 ? C6 ATP 302 A 1 HETATM 27 N N6 ATP . . . C 3 30.888 11.572 47.657 1 66.16 ? N6 ATP 302 A 1 HETATM 28 N N1 ATP . . . C 3 31.984 9.843 46.473 1 66.32 ? N1 ATP 302 A 1 HETATM 29 C C2 ATP . . . C 3 32.619 8.652 46.434 1 66.02 ? C2 ATP 302 A 1 HETATM 30 N N3 ATP . . . C 3 32.847 7.9 47.533 1 66.01 ? N3 ATP 302 A 1 HETATM 31 C C4 ATP . . . C 3 32.44 8.307 48.769 1 65.07 ? C4 ATP 302 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #