data_5AXU # _model_server_result.job_id IjZc1rPKYrngBiF1FPRicA _model_server_result.datetime_utc '2025-07-07 14:23:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5axu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 5AXU # _exptl.entry_id 5AXU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5AXU _cell.length_a 103.229 _cell.length_b 103.229 _cell.length_c 103.229 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AXU _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 1 1_555 A N ALA 2 A ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? metalc ? metalc1 B MG MG . A MG 301 1_555 C O2B ATP . A ATP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc2 B MG MG . A MG 301 1_555 C O3G ATP . A ATP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc3 B MG MG . A MG 301 1_555 C O2A ATP . A ATP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 184 n n C1 C2 EDO sing 185 n n C1 H11 EDO sing 186 n n C1 H12 EDO sing 187 n n O1 HO1 EDO sing 188 n n C2 O2 EDO sing 189 n n C2 H21 EDO sing 190 n n C2 H22 EDO sing 191 n n O2 HO2 EDO sing 192 n n # _atom_sites.entry_id 5AXU _atom_sites.fract_transf_matrix[1][1] 0.009687 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009687 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009687 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 301 301 MG MG . C 3 ATP A 1 302 302 ATP ATP . D 4 CTP A 1 303 303 CTP CTP . E 5 EDO A 1 304 304 EDO EDO . F 5 EDO A 1 305 305 EDO EDO . G 5 EDO A 1 306 306 EDO EDO . H 6 HOH A 1 401 538 HOH HOH . H 6 HOH A 2 402 456 HOH HOH . H 6 HOH A 3 403 505 HOH HOH . H 6 HOH A 4 404 435 HOH HOH . H 6 HOH A 5 405 426 HOH HOH . H 6 HOH A 6 406 537 HOH HOH . H 6 HOH A 7 407 432 HOH HOH . H 6 HOH A 8 408 475 HOH HOH . H 6 HOH A 9 409 422 HOH HOH . H 6 HOH A 10 410 459 HOH HOH . H 6 HOH A 11 411 509 HOH HOH . H 6 HOH A 12 412 421 HOH HOH . H 6 HOH A 13 413 428 HOH HOH . H 6 HOH A 14 414 427 HOH HOH . H 6 HOH A 15 415 455 HOH HOH . H 6 HOH A 16 416 407 HOH HOH . H 6 HOH A 17 417 404 HOH HOH . H 6 HOH A 18 418 478 HOH HOH . H 6 HOH A 19 419 462 HOH HOH . H 6 HOH A 20 420 474 HOH HOH . H 6 HOH A 21 421 484 HOH HOH . H 6 HOH A 22 422 414 HOH HOH . H 6 HOH A 23 423 472 HOH HOH . H 6 HOH A 24 424 406 HOH HOH . H 6 HOH A 25 425 450 HOH HOH . H 6 HOH A 26 426 408 HOH HOH . H 6 HOH A 27 427 402 HOH HOH . H 6 HOH A 28 428 433 HOH HOH . H 6 HOH A 29 429 503 HOH HOH . H 6 HOH A 30 430 451 HOH HOH . H 6 HOH A 31 431 466 HOH HOH . H 6 HOH A 32 432 463 HOH HOH . H 6 HOH A 33 433 413 HOH HOH . H 6 HOH A 34 434 445 HOH HOH . H 6 HOH A 35 435 452 HOH HOH . H 6 HOH A 36 436 431 HOH HOH . H 6 HOH A 37 437 411 HOH HOH . H 6 HOH A 38 438 417 HOH HOH . H 6 HOH A 39 439 492 HOH HOH . H 6 HOH A 40 440 523 HOH HOH . H 6 HOH A 41 441 415 HOH HOH . H 6 HOH A 42 442 470 HOH HOH . H 6 HOH A 43 443 437 HOH HOH . H 6 HOH A 44 444 419 HOH HOH . H 6 HOH A 45 445 465 HOH HOH . H 6 HOH A 46 446 521 HOH HOH . H 6 HOH A 47 447 522 HOH HOH . H 6 HOH A 48 448 447 HOH HOH . H 6 HOH A 49 449 429 HOH HOH . H 6 HOH A 50 450 486 HOH HOH . H 6 HOH A 51 451 461 HOH HOH . H 6 HOH A 52 452 446 HOH HOH . H 6 HOH A 53 453 476 HOH HOH . H 6 HOH A 54 454 520 HOH HOH . H 6 HOH A 55 455 507 HOH HOH . H 6 HOH A 56 456 439 HOH HOH . H 6 HOH A 57 457 412 HOH HOH . H 6 HOH A 58 458 496 HOH HOH . H 6 HOH A 59 459 405 HOH HOH . H 6 HOH A 60 460 527 HOH HOH . H 6 HOH A 61 461 482 HOH HOH . H 6 HOH A 62 462 442 HOH HOH . H 6 HOH A 63 463 518 HOH HOH . H 6 HOH A 64 464 416 HOH HOH . H 6 HOH A 65 465 457 HOH HOH . H 6 HOH A 66 466 430 HOH HOH . H 6 HOH A 67 467 495 HOH HOH . H 6 HOH A 68 468 501 HOH HOH . H 6 HOH A 69 469 460 HOH HOH . H 6 HOH A 70 470 436 HOH HOH . H 6 HOH A 71 471 514 HOH HOH . H 6 HOH A 72 472 512 HOH HOH . H 6 HOH A 73 473 531 HOH HOH . H 6 HOH A 74 474 513 HOH HOH . H 6 HOH A 75 475 418 HOH HOH . H 6 HOH A 76 476 425 HOH HOH . H 6 HOH A 77 477 510 HOH HOH . H 6 HOH A 78 478 403 HOH HOH . H 6 HOH A 79 479 420 HOH HOH . H 6 HOH A 80 480 477 HOH HOH . H 6 HOH A 81 481 410 HOH HOH . H 6 HOH A 82 482 499 HOH HOH . H 6 HOH A 83 483 409 HOH HOH . H 6 HOH A 84 484 458 HOH HOH . H 6 HOH A 85 485 485 HOH HOH . H 6 HOH A 86 486 490 HOH HOH . H 6 HOH A 87 487 488 HOH HOH . H 6 HOH A 88 488 401 HOH HOH . H 6 HOH A 89 489 467 HOH HOH . H 6 HOH A 90 490 517 HOH HOH . H 6 HOH A 91 491 487 HOH HOH . H 6 HOH A 92 492 438 HOH HOH . H 6 HOH A 93 493 473 HOH HOH . H 6 HOH A 94 494 468 HOH HOH . H 6 HOH A 95 495 444 HOH HOH . H 6 HOH A 96 496 506 HOH HOH . H 6 HOH A 97 497 494 HOH HOH . H 6 HOH A 98 498 526 HOH HOH . H 6 HOH A 99 499 448 HOH HOH . H 6 HOH A 100 500 504 HOH HOH . H 6 HOH A 101 501 423 HOH HOH . H 6 HOH A 102 502 441 HOH HOH . H 6 HOH A 103 503 440 HOH HOH . H 6 HOH A 104 504 528 HOH HOH . H 6 HOH A 105 505 464 HOH HOH . H 6 HOH A 106 506 489 HOH HOH . H 6 HOH A 107 507 471 HOH HOH . H 6 HOH A 108 508 524 HOH HOH . H 6 HOH A 109 509 434 HOH HOH . H 6 HOH A 110 510 540 HOH HOH . H 6 HOH A 111 511 493 HOH HOH . H 6 HOH A 112 512 443 HOH HOH . H 6 HOH A 113 513 508 HOH HOH . H 6 HOH A 114 514 491 HOH HOH . H 6 HOH A 115 515 469 HOH HOH . H 6 HOH A 116 516 453 HOH HOH . H 6 HOH A 117 517 525 HOH HOH . H 6 HOH A 118 518 502 HOH HOH . H 6 HOH A 119 519 536 HOH HOH . H 6 HOH A 120 520 449 HOH HOH . H 6 HOH A 121 521 479 HOH HOH . H 6 HOH A 122 522 534 HOH HOH . H 6 HOH A 123 523 424 HOH HOH . H 6 HOH A 124 524 498 HOH HOH . H 6 HOH A 125 525 483 HOH HOH . H 6 HOH A 126 526 516 HOH HOH . H 6 HOH A 127 527 481 HOH HOH . H 6 HOH A 128 528 454 HOH HOH . H 6 HOH A 129 529 480 HOH HOH . H 6 HOH A 130 530 532 HOH HOH . H 6 HOH A 131 531 497 HOH HOH . H 6 HOH A 132 532 511 HOH HOH . H 6 HOH A 133 533 500 HOH HOH . H 6 HOH A 134 534 515 HOH HOH . H 6 HOH A 135 535 530 HOH HOH . H 6 HOH A 136 536 535 HOH HOH . H 6 HOH A 137 537 529 HOH HOH . H 6 HOH A 138 538 539 HOH HOH . H 6 HOH A 139 539 519 HOH HOH . H 6 HOH A 140 540 533 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 5 10.997 -2.417 33.412 1 12.68 ? C1 EDO 304 A 1 HETATM 2 O O1 EDO . . . E 5 9.662 -1.926 33.218 1 12.65 ? O1 EDO 304 A 1 HETATM 3 C C2 EDO . . . E 5 10.928 -3.703 34.234 1 12.3 ? C2 EDO 304 A 1 HETATM 4 O O2 EDO . . . E 5 10.34 -4.748 33.448 1 12.52 ? O2 EDO 304 A 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #