data_5AYA # _model_server_result.job_id NjEKO8xsIXt1PkajrVaU-w _model_server_result.datetime_utc '2024-10-19 12:36:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5aya # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5AYA # _exptl.entry_id 5AYA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5AYA _cell.length_a 68.097 _cell.length_b 68.097 _cell.length_c 49.11 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AYA _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 162 A CYS 162 1_555 A SG CYS 167 A CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 208 A CYS 208 1_555 A SG CYS 242 A CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc1 A OD1 ASN 17 A ASN 17 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? metalc ? metalc2 A O SER 70 A SER 70 1_555 E NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? metalc ? metalc3 A O THR 71 A THR 71 1_555 E NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc4 A NE2 HIS 72 A HIS 72 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc5 A ND1 HIS 74 A HIS 74 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc6 A OD2 ASP 76 A ASP 76 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc7 A NE2 HIS 77 A HIS 77 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc8 A NE2 HIS 150 A HIS 150 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc9 A O GLY 153 A GLY 153 1_555 E NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.943 ? metalc ? metalc10 A O GLN 160 A GLN 160 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc11 A NE2 HIS 215 A HIS 215 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc12 B ZN ZN . A ZN 301 1_555 H S X8Z . A X8Z 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc13 C ZN ZN . A ZN 302 1_555 H S X8Z . A X8Z 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc14 D NA NA . A NA 303 1_555 I O HOH . A HOH 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc15 E NA NA . A NA 304 1_555 I O HOH . A HOH 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5AYA _atom_sites.fract_transf_matrix[1][1] 0.014685 _atom_sites.fract_transf_matrix[1][2] 0.008478 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016957 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020362 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 301 ZN ZN . C 2 ZN A 1 302 302 ZN ZN . D 3 NA A 1 303 401 NA NA . E 3 NA A 1 304 402 NA NA . F 4 SO4 A 1 305 501 SO4 SO4 . G 4 SO4 A 1 306 502 SO4 SO4 . H 5 X8Z A 1 307 601 X8Z PT9 . I 6 HOH A 1 401 817 HOH HOH . I 6 HOH A 2 402 802 HOH HOH . I 6 HOH A 3 403 792 HOH HOH . I 6 HOH A 4 404 775 HOH HOH . I 6 HOH A 5 405 717 HOH HOH . I 6 HOH A 6 406 710 HOH HOH . I 6 HOH A 7 407 727 HOH HOH . I 6 HOH A 8 408 774 HOH HOH . I 6 HOH A 9 409 801 HOH HOH . I 6 HOH A 10 410 825 HOH HOH . I 6 HOH A 11 411 773 HOH HOH . I 6 HOH A 12 412 722 HOH HOH . I 6 HOH A 13 413 820 HOH HOH . I 6 HOH A 14 414 723 HOH HOH . I 6 HOH A 15 415 731 HOH HOH . I 6 HOH A 16 416 832 HOH HOH . I 6 HOH A 17 417 747 HOH HOH . I 6 HOH A 18 418 831 HOH HOH . I 6 HOH A 19 419 784 HOH HOH . I 6 HOH A 20 420 808 HOH HOH . I 6 HOH A 21 421 778 HOH HOH . I 6 HOH A 22 422 782 HOH HOH . I 6 HOH A 23 423 734 HOH HOH . I 6 HOH A 24 424 740 HOH HOH . I 6 HOH A 25 425 772 HOH HOH . I 6 HOH A 26 426 707 HOH HOH . I 6 HOH A 27 427 719 HOH HOH . I 6 HOH A 28 428 716 HOH HOH . I 6 HOH A 29 429 826 HOH HOH . I 6 HOH A 30 430 702 HOH HOH . I 6 HOH A 31 431 766 HOH HOH . I 6 HOH A 32 432 714 HOH HOH . I 6 HOH A 33 433 769 HOH HOH . I 6 HOH A 34 434 810 HOH HOH . I 6 HOH A 35 435 706 HOH HOH . I 6 HOH A 36 436 780 HOH HOH . I 6 HOH A 37 437 806 HOH HOH . I 6 HOH A 38 438 708 HOH HOH . I 6 HOH A 39 439 823 HOH HOH . I 6 HOH A 40 440 730 HOH HOH . I 6 HOH A 41 441 791 HOH HOH . I 6 HOH A 42 442 815 HOH HOH . I 6 HOH A 43 443 733 HOH HOH . I 6 HOH A 44 444 829 HOH HOH . I 6 HOH A 45 445 718 HOH HOH . I 6 HOH A 46 446 814 HOH HOH . I 6 HOH A 47 447 776 HOH HOH . I 6 HOH A 48 448 736 HOH HOH . I 6 HOH A 49 449 712 HOH HOH . I 6 HOH A 50 450 795 HOH HOH . I 6 HOH A 51 451 720 HOH HOH . I 6 HOH A 52 452 738 HOH HOH . I 6 HOH A 53 453 809 HOH HOH . I 6 HOH A 54 454 729 HOH HOH . I 6 HOH A 55 455 803 HOH HOH . I 6 HOH A 56 456 701 HOH HOH . I 6 HOH A 57 457 786 HOH HOH . I 6 HOH A 58 458 735 HOH HOH . I 6 HOH A 59 459 764 HOH HOH . I 6 HOH A 60 460 828 HOH HOH . I 6 HOH A 61 461 787 HOH HOH . I 6 HOH A 62 462 796 HOH HOH . I 6 HOH A 63 463 771 HOH HOH . I 6 HOH A 64 464 746 HOH HOH . I 6 HOH A 65 465 800 HOH HOH . I 6 HOH A 66 466 788 HOH HOH . I 6 HOH A 67 467 760 HOH HOH . I 6 HOH A 68 468 781 HOH HOH . I 6 HOH A 69 469 704 HOH HOH . I 6 HOH A 70 470 713 HOH HOH . I 6 HOH A 71 471 742 HOH HOH . I 6 HOH A 72 472 709 HOH HOH . I 6 HOH A 73 473 768 HOH HOH . I 6 HOH A 74 474 822 HOH HOH . I 6 HOH A 75 475 732 HOH HOH . I 6 HOH A 76 476 737 HOH HOH . I 6 HOH A 77 477 721 HOH HOH . I 6 HOH A 78 478 790 HOH HOH . I 6 HOH A 79 479 798 HOH HOH . I 6 HOH A 80 480 770 HOH HOH . I 6 HOH A 81 481 813 HOH HOH . I 6 HOH A 82 482 767 HOH HOH . I 6 HOH A 83 483 715 HOH HOH . I 6 HOH A 84 484 743 HOH HOH . I 6 HOH A 85 485 793 HOH HOH . I 6 HOH A 86 486 739 HOH HOH . I 6 HOH A 87 487 779 HOH HOH . I 6 HOH A 88 488 811 HOH HOH . I 6 HOH A 89 489 703 HOH HOH . I 6 HOH A 90 490 724 HOH HOH . I 6 HOH A 91 491 711 HOH HOH . I 6 HOH A 92 492 726 HOH HOH . I 6 HOH A 93 493 777 HOH HOH . I 6 HOH A 94 494 797 HOH HOH . I 6 HOH A 95 495 807 HOH HOH . I 6 HOH A 96 496 705 HOH HOH . I 6 HOH A 97 497 821 HOH HOH . I 6 HOH A 98 498 789 HOH HOH . I 6 HOH A 99 499 728 HOH HOH . I 6 HOH A 100 500 763 HOH HOH . I 6 HOH A 101 501 759 HOH HOH . I 6 HOH A 102 502 785 HOH HOH . I 6 HOH A 103 503 799 HOH HOH . I 6 HOH A 104 504 745 HOH HOH . I 6 HOH A 105 505 827 HOH HOH . I 6 HOH A 106 506 783 HOH HOH . I 6 HOH A 107 507 830 HOH HOH . I 6 HOH A 108 508 762 HOH HOH . I 6 HOH A 109 509 725 HOH HOH . I 6 HOH A 110 510 818 HOH HOH . I 6 HOH A 111 511 741 HOH HOH . I 6 HOH A 112 512 824 HOH HOH . I 6 HOH A 113 513 816 HOH HOH . I 6 HOH A 114 514 804 HOH HOH . I 6 HOH A 115 515 765 HOH HOH . I 6 HOH A 116 516 744 HOH HOH . I 6 HOH A 117 517 794 HOH HOH . I 6 HOH A 118 518 758 HOH HOH . I 6 HOH A 119 519 761 HOH HOH . I 6 HOH A 120 520 819 HOH HOH . I 6 HOH A 121 521 805 HOH HOH . I 6 HOH A 122 522 812 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -8.607 _atom_site.Cartn_y -6.673 _atom_site.Cartn_z 4.734 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 34.35 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 303 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #