data_5AYK
#
_model_server_result.job_id            hOVX_e4qiZES-fuxBdQbMg 
_model_server_result.datetime_utc      '2024-10-14 07:26:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ayk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":801}' 
#
_entry.id    5AYK 
#
_exptl.entry_id    5AYK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              201.243 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          113.54 
_cell.angle_gamma         90 
_cell.entry_id            5AYK 
_cell.length_a            91.99 
_cell.length_b            52.97 
_cell.length_c            92.9 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5AYK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 176 A CYS 186 1_555 A SG CYS 183 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf2 A SG CYS 284 A CYS 294 1_555 A SG CYS 291 A CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 A SG CYS 393 A CYS 403 1_555 A SG CYS 400 A CYS 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 A SG CYS 498 A CYS 508 1_555 A SG CYS 505 A CYS 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf5 A SG CYS 606 A CYS 616 1_555 A SG CYS 613 A CYS 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf6 A SG CYS 718 A CYS 728 1_555 A SG CYS 725 A CYS 735 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C8 H11 N O3 S' 
_chem_comp.formula_weight    201.243 
_chem_comp.id                1PS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '1-(3-SULFOPROPYL) PYRIDINIUM;PPS' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C1 1PS sing 1 n y 
N1 C3 1PS doub 2 n y 
N1 C6 1PS sing 3 n n 
C1 C2 1PS doub 4 n y 
C1 H1 1PS sing 5 n n 
C2 C5 1PS sing 6 n y 
C2 H2 1PS sing 7 n n 
C3 C4 1PS sing 8 n y 
C3 H3 1PS sing 9 n n 
C4 C5 1PS doub 10 n y 
C4 H4 1PS sing 11 n n 
C5 H5 1PS sing 12 n n 
C6 C7 1PS sing 13 n n 
C6 H61 1PS sing 14 n n 
C6 H62 1PS sing 15 n n 
C7 C8 1PS sing 16 n n 
C7 H71 1PS sing 17 n n 
C7 H72 1PS sing 18 n n 
C8 S1 1PS sing 19 n n 
C8 H81 1PS sing 20 n n 
C8 H82 1PS sing 21 n n 
S1 O1 1PS sing 22 n n 
S1 O2 1PS doub 23 n n 
S1 O3 1PS doub 24 n n 
#
_atom_sites.entry_id                     5AYK 
_atom_sites.fract_transf_matrix[1][1]    0.010871 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004735 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018879 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011741 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 1PS A 1 801 1 1PS 1PS . 
C 3 CL A 1 802 1 CL CL . 
D 4 HOH A 1 901 42 HOH HOH . 
D 4 HOH A 2 902 111 HOH HOH . 
D 4 HOH A 3 903 55 HOH HOH . 
D 4 HOH A 4 904 31 HOH HOH . 
D 4 HOH A 5 905 35 HOH HOH . 
D 4 HOH A 6 906 13 HOH HOH . 
D 4 HOH A 7 907 52 HOH HOH . 
D 4 HOH A 8 908 41 HOH HOH . 
D 4 HOH A 9 909 101 HOH HOH . 
D 4 HOH A 10 910 27 HOH HOH . 
D 4 HOH A 11 911 130 HOH HOH . 
D 4 HOH A 12 912 124 HOH HOH . 
D 4 HOH A 13 913 2 HOH HOH . 
D 4 HOH A 14 914 29 HOH HOH . 
D 4 HOH A 15 915 16 HOH HOH . 
D 4 HOH A 16 916 17 HOH HOH . 
D 4 HOH A 17 917 73 HOH HOH . 
D 4 HOH A 18 918 26 HOH HOH . 
D 4 HOH A 19 919 108 HOH HOH . 
D 4 HOH A 20 920 115 HOH HOH . 
D 4 HOH A 21 921 8 HOH HOH . 
D 4 HOH A 22 922 18 HOH HOH . 
D 4 HOH A 23 923 122 HOH HOH . 
D 4 HOH A 24 924 6 HOH HOH . 
D 4 HOH A 25 925 24 HOH HOH . 
D 4 HOH A 26 926 99 HOH HOH . 
D 4 HOH A 27 927 3 HOH HOH . 
D 4 HOH A 28 928 104 HOH HOH . 
D 4 HOH A 29 929 103 HOH HOH . 
D 4 HOH A 30 930 126 HOH HOH . 
D 4 HOH A 31 931 9 HOH HOH . 
D 4 HOH A 32 932 46 HOH HOH . 
D 4 HOH A 33 933 15 HOH HOH . 
D 4 HOH A 34 934 4 HOH HOH . 
D 4 HOH A 35 935 22 HOH HOH . 
D 4 HOH A 36 936 88 HOH HOH . 
D 4 HOH A 37 937 58 HOH HOH . 
D 4 HOH A 38 938 23 HOH HOH . 
D 4 HOH A 39 939 105 HOH HOH . 
D 4 HOH A 40 940 71 HOH HOH . 
D 4 HOH A 41 941 5 HOH HOH . 
D 4 HOH A 42 942 21 HOH HOH . 
D 4 HOH A 43 943 91 HOH HOH . 
D 4 HOH A 44 944 118 HOH HOH . 
D 4 HOH A 45 945 11 HOH HOH . 
D 4 HOH A 46 946 38 HOH HOH . 
D 4 HOH A 47 947 67 HOH HOH . 
D 4 HOH A 48 948 97 HOH HOH . 
D 4 HOH A 49 949 48 HOH HOH . 
D 4 HOH A 50 950 43 HOH HOH . 
D 4 HOH A 51 951 59 HOH HOH . 
D 4 HOH A 52 952 34 HOH HOH . 
D 4 HOH A 53 953 37 HOH HOH . 
D 4 HOH A 54 954 98 HOH HOH . 
D 4 HOH A 55 955 33 HOH HOH . 
D 4 HOH A 56 956 50 HOH HOH . 
D 4 HOH A 57 957 51 HOH HOH . 
D 4 HOH A 58 958 69 HOH HOH . 
D 4 HOH A 59 959 66 HOH HOH . 
D 4 HOH A 60 960 123 HOH HOH . 
D 4 HOH A 61 961 109 HOH HOH . 
D 4 HOH A 62 962 10 HOH HOH . 
D 4 HOH A 63 963 61 HOH HOH . 
D 4 HOH A 64 964 102 HOH HOH . 
D 4 HOH A 65 965 133 HOH HOH . 
D 4 HOH A 66 966 36 HOH HOH . 
D 4 HOH A 67 967 12 HOH HOH . 
D 4 HOH A 68 968 87 HOH HOH . 
D 4 HOH A 69 969 129 HOH HOH . 
D 4 HOH A 70 970 92 HOH HOH . 
D 4 HOH A 71 971 44 HOH HOH . 
D 4 HOH A 72 972 77 HOH HOH . 
D 4 HOH A 73 973 131 HOH HOH . 
D 4 HOH A 74 974 63 HOH HOH . 
D 4 HOH A 75 975 30 HOH HOH . 
D 4 HOH A 76 976 60 HOH HOH . 
D 4 HOH A 77 977 20 HOH HOH . 
D 4 HOH A 78 978 47 HOH HOH . 
D 4 HOH A 79 979 74 HOH HOH . 
D 4 HOH A 80 980 84 HOH HOH . 
D 4 HOH A 81 981 82 HOH HOH . 
D 4 HOH A 82 982 125 HOH HOH . 
D 4 HOH A 83 983 76 HOH HOH . 
D 4 HOH A 84 984 56 HOH HOH . 
D 4 HOH A 85 985 112 HOH HOH . 
D 4 HOH A 86 986 94 HOH HOH . 
D 4 HOH A 87 987 93 HOH HOH . 
D 4 HOH A 88 988 132 HOH HOH . 
D 4 HOH A 89 989 75 HOH HOH . 
D 4 HOH A 90 990 134 HOH HOH . 
D 4 HOH A 91 991 65 HOH HOH . 
D 4 HOH A 92 992 121 HOH HOH . 
D 4 HOH A 93 993 7 HOH HOH . 
D 4 HOH A 94 994 72 HOH HOH . 
D 4 HOH A 95 995 64 HOH HOH . 
D 4 HOH A 96 996 80 HOH HOH . 
D 4 HOH A 97 997 106 HOH HOH . 
D 4 HOH A 98 998 81 HOH HOH . 
D 4 HOH A 99 999 28 HOH HOH . 
D 4 HOH A 100 1000 62 HOH HOH . 
D 4 HOH A 101 1001 86 HOH HOH . 
D 4 HOH A 102 1002 68 HOH HOH . 
D 4 HOH A 103 1003 135 HOH HOH . 
D 4 HOH A 104 1004 83 HOH HOH . 
D 4 HOH A 105 1005 90 HOH HOH . 
D 4 HOH A 106 1006 95 HOH HOH . 
D 4 HOH A 107 1007 114 HOH HOH . 
D 4 HOH A 108 1008 128 HOH HOH . 
D 4 HOH A 109 1009 32 HOH HOH . 
D 4 HOH A 110 1010 78 HOH HOH . 
D 4 HOH A 111 1011 119 HOH HOH . 
D 4 HOH A 112 1012 136 HOH HOH . 
D 4 HOH A 113 1013 53 HOH HOH . 
D 4 HOH A 114 1014 107 HOH HOH . 
D 4 HOH A 115 1015 120 HOH HOH . 
D 4 HOH A 116 1016 117 HOH HOH . 
D 4 HOH A 117 1017 96 HOH HOH . 
D 4 HOH A 118 1018 40 HOH HOH . 
D 4 HOH A 119 1019 110 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 1PS . . . B 2 -0.11 16.123 -2.779 1 57.7 ? N1 1PS 801 A 1 
HETATM 2 C C1 1PS . . . B 2 -0.106 16.851 -3.933 1 56.65 ? C1 1PS 801 A 1 
HETATM 3 C C2 1PS . . . B 2 1.071 17.438 -4.374 1 56.48 ? C2 1PS 801 A 1 
HETATM 4 C C3 1PS . . . B 2 1.045 15.978 -2.064 1 57.31 ? C3 1PS 801 A 1 
HETATM 5 C C4 1PS . . . B 2 2.225 16.562 -2.501 1 56.92 ? C4 1PS 801 A 1 
HETATM 6 C C5 1PS . . . B 2 2.225 17.293 -3.654 1 56.67 ? C5 1PS 801 A 1 
HETATM 7 C C6 1PS . . . B 2 -1.321 15.525 -2.323 1 59.01 ? C6 1PS 801 A 1 
HETATM 8 C C7 1PS . . . B 2 -1.118 14.066 -1.968 1 61.35 ? C7 1PS 801 A 1 
HETATM 9 C C8 1PS . . . B 2 -1.383 13.226 -3.198 1 63.07 ? C8 1PS 801 A 1 
HETATM 10 S S1 1PS . . . B 2 -1.783 11.557 -2.756 1 95.7 ? S1 1PS 801 A 1 
HETATM 11 O O1 1PS . . . B 2 -2.519 11.494 -1.437 1 95.37 ? O1 1PS 801 A 1 
HETATM 12 O O2 1PS . . . B 2 -2.586 10.933 -3.868 1 96.39 ? O2 1PS 801 A 1 
HETATM 13 O O3 1PS . . . B 2 -0.541 10.747 -2.466 1 95.21 ? O3 1PS 801 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           13 
#