data_5AYL # _model_server_result.job_id mvpSGneJbLLkluOiIWQlNA _model_server_result.datetime_utc '2024-10-14 08:24:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ayl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 5AYL # _exptl.entry_id 5AYL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 201.243 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.41 _cell.angle_gamma 90 _cell.entry_id 5AYL _cell.length_a 75.981 _cell.length_b 75.564 _cell.length_c 79.237 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AYL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 176 A CYS 186 1_555 A SG CYS 183 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 254 A CYS 264 1_555 A SG CYS 260 A CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 A SG CYS 284 A CYS 294 1_555 A SG CYS 291 A CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 393 A CYS 403 1_555 A SG CYS 400 A CYS 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 498 A CYS 508 1_555 A SG CYS 505 A CYS 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 A SG CYS 606 A CYS 616 1_555 A SG CYS 613 A CYS 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf7 A SG CYS 718 A CYS 728 1_555 A SG CYS 725 A CYS 735 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? # _chem_comp.formula 'C8 H11 N O3 S' _chem_comp.formula_weight 201.243 _chem_comp.id 1PS _chem_comp.mon_nstd_flag . _chem_comp.name 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '1-(3-SULFOPROPYL) PYRIDINIUM;PPS' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 1PS sing 1 n y N1 C3 1PS doub 2 n y N1 C6 1PS sing 3 n n C1 C2 1PS doub 4 n y C1 H1 1PS sing 5 n n C2 C5 1PS sing 6 n y C2 H2 1PS sing 7 n n C3 C4 1PS sing 8 n y C3 H3 1PS sing 9 n n C4 C5 1PS doub 10 n y C4 H4 1PS sing 11 n n C5 H5 1PS sing 12 n n C6 C7 1PS sing 13 n n C6 H61 1PS sing 14 n n C6 H62 1PS sing 15 n n C7 C8 1PS sing 16 n n C7 H71 1PS sing 17 n n C7 H72 1PS sing 18 n n C8 S1 1PS sing 19 n n C8 H81 1PS sing 20 n n C8 H82 1PS sing 21 n n S1 O1 1PS sing 22 n n S1 O2 1PS doub 23 n n S1 O3 1PS doub 24 n n # _atom_sites.entry_id 5AYL _atom_sites.fract_transf_matrix[1][1] 0.013161 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002181 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013234 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012793 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1PS A 1 801 1 1PS 1PS . C 3 HOH A 1 901 11 HOH HOH . C 3 HOH A 2 902 71 HOH HOH . C 3 HOH A 3 903 157 HOH HOH . C 3 HOH A 4 904 167 HOH HOH . C 3 HOH A 5 905 48 HOH HOH . C 3 HOH A 6 906 66 HOH HOH . C 3 HOH A 7 907 185 HOH HOH . C 3 HOH A 8 908 199 HOH HOH . C 3 HOH A 9 909 98 HOH HOH . C 3 HOH A 10 910 3 HOH HOH . C 3 HOH A 11 911 72 HOH HOH . C 3 HOH A 12 912 62 HOH HOH . C 3 HOH A 13 913 103 HOH HOH . C 3 HOH A 14 914 21 HOH HOH . C 3 HOH A 15 915 150 HOH HOH . C 3 HOH A 16 916 36 HOH HOH . C 3 HOH A 17 917 206 HOH HOH . C 3 HOH A 18 918 5 HOH HOH . C 3 HOH A 19 919 104 HOH HOH . C 3 HOH A 20 920 184 HOH HOH . C 3 HOH A 21 921 108 HOH HOH . C 3 HOH A 22 922 67 HOH HOH . C 3 HOH A 23 923 201 HOH HOH . C 3 HOH A 24 924 12 HOH HOH . C 3 HOH A 25 925 51 HOH HOH . C 3 HOH A 26 926 116 HOH HOH . C 3 HOH A 27 927 27 HOH HOH . C 3 HOH A 28 928 46 HOH HOH . C 3 HOH A 29 929 124 HOH HOH . C 3 HOH A 30 930 138 HOH HOH . C 3 HOH A 31 931 15 HOH HOH . C 3 HOH A 32 932 6 HOH HOH . C 3 HOH A 33 933 179 HOH HOH . C 3 HOH A 34 934 56 HOH HOH . C 3 HOH A 35 935 90 HOH HOH . C 3 HOH A 36 936 93 HOH HOH . C 3 HOH A 37 937 127 HOH HOH . C 3 HOH A 38 938 125 HOH HOH . C 3 HOH A 39 939 156 HOH HOH . C 3 HOH A 40 940 145 HOH HOH . C 3 HOH A 41 941 13 HOH HOH . C 3 HOH A 42 942 217 HOH HOH . C 3 HOH A 43 943 221 HOH HOH . C 3 HOH A 44 944 63 HOH HOH . C 3 HOH A 45 945 75 HOH HOH . C 3 HOH A 46 946 87 HOH HOH . C 3 HOH A 47 947 191 HOH HOH . C 3 HOH A 48 948 64 HOH HOH . C 3 HOH A 49 949 147 HOH HOH . C 3 HOH A 50 950 4 HOH HOH . C 3 HOH A 51 951 16 HOH HOH . C 3 HOH A 52 952 208 HOH HOH . C 3 HOH A 53 953 132 HOH HOH . C 3 HOH A 54 954 81 HOH HOH . C 3 HOH A 55 955 160 HOH HOH . C 3 HOH A 56 956 122 HOH HOH . C 3 HOH A 57 957 10 HOH HOH . C 3 HOH A 58 958 154 HOH HOH . C 3 HOH A 59 959 42 HOH HOH . C 3 HOH A 60 960 164 HOH HOH . C 3 HOH A 61 961 195 HOH HOH . C 3 HOH A 62 962 44 HOH HOH . C 3 HOH A 63 963 137 HOH HOH . C 3 HOH A 64 964 22 HOH HOH . C 3 HOH A 65 965 38 HOH HOH . C 3 HOH A 66 966 194 HOH HOH . C 3 HOH A 67 967 159 HOH HOH . C 3 HOH A 68 968 2 HOH HOH . C 3 HOH A 69 969 174 HOH HOH . C 3 HOH A 70 970 76 HOH HOH . C 3 HOH A 71 971 14 HOH HOH . C 3 HOH A 72 972 57 HOH HOH . C 3 HOH A 73 973 115 HOH HOH . C 3 HOH A 74 974 162 HOH HOH . C 3 HOH A 75 975 17 HOH HOH . C 3 HOH A 76 976 23 HOH HOH . C 3 HOH A 77 977 123 HOH HOH . C 3 HOH A 78 978 52 HOH HOH . C 3 HOH A 79 979 134 HOH HOH . C 3 HOH A 80 980 119 HOH HOH . C 3 HOH A 81 981 172 HOH HOH . C 3 HOH A 82 982 26 HOH HOH . C 3 HOH A 83 983 31 HOH HOH . C 3 HOH A 84 984 175 HOH HOH . C 3 HOH A 85 985 129 HOH HOH . C 3 HOH A 86 986 112 HOH HOH . C 3 HOH A 87 987 79 HOH HOH . C 3 HOH A 88 988 19 HOH HOH . C 3 HOH A 89 989 8 HOH HOH . C 3 HOH A 90 990 30 HOH HOH . C 3 HOH A 91 991 188 HOH HOH . C 3 HOH A 92 992 32 HOH HOH . C 3 HOH A 93 993 77 HOH HOH . C 3 HOH A 94 994 223 HOH HOH . C 3 HOH A 95 995 107 HOH HOH . C 3 HOH A 96 996 40 HOH HOH . C 3 HOH A 97 997 205 HOH HOH . C 3 HOH A 98 998 60 HOH HOH . C 3 HOH A 99 999 58 HOH HOH . C 3 HOH A 100 1000 228 HOH HOH . C 3 HOH A 101 1001 49 HOH HOH . C 3 HOH A 102 1002 73 HOH HOH . C 3 HOH A 103 1003 113 HOH HOH . C 3 HOH A 104 1004 168 HOH HOH . C 3 HOH A 105 1005 34 HOH HOH . C 3 HOH A 106 1006 198 HOH HOH . C 3 HOH A 107 1007 141 HOH HOH . C 3 HOH A 108 1008 29 HOH HOH . C 3 HOH A 109 1009 161 HOH HOH . C 3 HOH A 110 1010 37 HOH HOH . C 3 HOH A 111 1011 55 HOH HOH . C 3 HOH A 112 1012 78 HOH HOH . C 3 HOH A 113 1013 39 HOH HOH . C 3 HOH A 114 1014 33 HOH HOH . C 3 HOH A 115 1015 50 HOH HOH . C 3 HOH A 116 1016 183 HOH HOH . C 3 HOH A 117 1017 18 HOH HOH . C 3 HOH A 118 1018 20 HOH HOH . C 3 HOH A 119 1019 43 HOH HOH . C 3 HOH A 120 1020 146 HOH HOH . C 3 HOH A 121 1021 144 HOH HOH . C 3 HOH A 122 1022 85 HOH HOH . C 3 HOH A 123 1023 193 HOH HOH . C 3 HOH A 124 1024 65 HOH HOH . C 3 HOH A 125 1025 186 HOH HOH . C 3 HOH A 126 1026 203 HOH HOH . C 3 HOH A 127 1027 59 HOH HOH . C 3 HOH A 128 1028 92 HOH HOH . C 3 HOH A 129 1029 109 HOH HOH . C 3 HOH A 130 1030 131 HOH HOH . C 3 HOH A 131 1031 99 HOH HOH . C 3 HOH A 132 1032 54 HOH HOH . C 3 HOH A 133 1033 133 HOH HOH . C 3 HOH A 134 1034 196 HOH HOH . C 3 HOH A 135 1035 170 HOH HOH . C 3 HOH A 136 1036 45 HOH HOH . C 3 HOH A 137 1037 202 HOH HOH . C 3 HOH A 138 1038 165 HOH HOH . C 3 HOH A 139 1039 114 HOH HOH . C 3 HOH A 140 1040 163 HOH HOH . C 3 HOH A 141 1041 97 HOH HOH . C 3 HOH A 142 1042 100 HOH HOH . C 3 HOH A 143 1043 220 HOH HOH . C 3 HOH A 144 1044 9 HOH HOH . C 3 HOH A 145 1045 200 HOH HOH . C 3 HOH A 146 1046 95 HOH HOH . C 3 HOH A 147 1047 177 HOH HOH . C 3 HOH A 148 1048 70 HOH HOH . C 3 HOH A 149 1049 189 HOH HOH . C 3 HOH A 150 1050 101 HOH HOH . C 3 HOH A 151 1051 117 HOH HOH . C 3 HOH A 152 1052 158 HOH HOH . C 3 HOH A 153 1053 143 HOH HOH . C 3 HOH A 154 1054 53 HOH HOH . C 3 HOH A 155 1055 83 HOH HOH . C 3 HOH A 156 1056 61 HOH HOH . C 3 HOH A 157 1057 120 HOH HOH . C 3 HOH A 158 1058 82 HOH HOH . C 3 HOH A 159 1059 135 HOH HOH . C 3 HOH A 160 1060 190 HOH HOH . C 3 HOH A 161 1061 41 HOH HOH . C 3 HOH A 162 1062 209 HOH HOH . C 3 HOH A 163 1063 216 HOH HOH . C 3 HOH A 164 1064 155 HOH HOH . C 3 HOH A 165 1065 197 HOH HOH . C 3 HOH A 166 1066 219 HOH HOH . C 3 HOH A 167 1067 86 HOH HOH . C 3 HOH A 168 1068 25 HOH HOH . C 3 HOH A 169 1069 181 HOH HOH . C 3 HOH A 170 1070 153 HOH HOH . C 3 HOH A 171 1071 118 HOH HOH . C 3 HOH A 172 1072 229 HOH HOH . C 3 HOH A 173 1073 151 HOH HOH . C 3 HOH A 174 1074 152 HOH HOH . C 3 HOH A 175 1075 212 HOH HOH . C 3 HOH A 176 1076 121 HOH HOH . C 3 HOH A 177 1077 207 HOH HOH . C 3 HOH A 178 1078 126 HOH HOH . C 3 HOH A 179 1079 74 HOH HOH . C 3 HOH A 180 1080 35 HOH HOH . C 3 HOH A 181 1081 69 HOH HOH . C 3 HOH A 182 1082 187 HOH HOH . C 3 HOH A 183 1083 94 HOH HOH . C 3 HOH A 184 1084 148 HOH HOH . C 3 HOH A 185 1085 180 HOH HOH . C 3 HOH A 186 1086 213 HOH HOH . C 3 HOH A 187 1087 178 HOH HOH . C 3 HOH A 188 1088 105 HOH HOH . C 3 HOH A 189 1089 88 HOH HOH . C 3 HOH A 190 1090 166 HOH HOH . C 3 HOH A 191 1091 210 HOH HOH . C 3 HOH A 192 1092 136 HOH HOH . C 3 HOH A 193 1093 128 HOH HOH . C 3 HOH A 194 1094 214 HOH HOH . C 3 HOH A 195 1095 7 HOH HOH . C 3 HOH A 196 1096 149 HOH HOH . C 3 HOH A 197 1097 226 HOH HOH . C 3 HOH A 198 1098 215 HOH HOH . C 3 HOH A 199 1099 218 HOH HOH . C 3 HOH A 200 1100 227 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 1PS . . . B 2 63.375 -29.881 12.954 1 71.07 ? N1 1PS 801 A 1 HETATM 2 C C1 1PS . . . B 2 63.373 -30.939 13.818 1 71.33 ? C1 1PS 801 A 1 HETATM 3 C C2 1PS . . . B 2 64.496 -31.21 14.581 1 71.27 ? C2 1PS 801 A 1 HETATM 4 C C3 1PS . . . B 2 64.474 -29.085 12.84 1 71.84 ? C3 1PS 801 A 1 HETATM 5 C C4 1PS . . . B 2 65.598 -29.355 13.603 1 74.27 ? C4 1PS 801 A 1 HETATM 6 C C5 1PS . . . B 2 65.601 -30.415 14.467 1 73.52 ? C5 1PS 801 A 1 HETATM 7 C C6 1PS . . . B 2 62.221 -29.601 12.173 1 67.35 ? C6 1PS 801 A 1 HETATM 8 C C7 1PS . . . B 2 61.215 -28.939 13.087 1 63.73 ? C7 1PS 801 A 1 HETATM 9 C C8 1PS . . . B 2 60.923 -27.537 12.609 1 61.96 ? C8 1PS 801 A 1 HETATM 10 S S1 1PS . . . B 2 59.176 -27.297 12.733 1 79.58 ? S1 1PS 801 A 1 HETATM 11 O O1 1PS . . . B 2 58.738 -27.189 14.177 1 81.17 ? O1 1PS 801 A 1 HETATM 12 O O2 1PS . . . B 2 58.764 -25.953 12.182 1 81.36 ? O2 1PS 801 A 1 HETATM 13 O O3 1PS . . . B 2 58.478 -28.426 12.015 1 79.45 ? O3 1PS 801 A 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #