data_5AYN
#
_model_server_result.job_id            Q2bptwH0ppmfdXD9Ln6J5g 
_model_server_result.datetime_utc      '2024-12-22 05:16:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ayn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    5AYN 
#
_exptl.entry_id    5AYN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5AYN 
_cell.length_a            56.638 
_cell.length_b            84.629 
_cell.length_c            96.809 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5AYN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O THR 20 A THR 20 1_555 B K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? 
metalc ? metalc2 A OG1 THR 20 A THR 20 1_555 B K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? 
metalc ? metalc3 A OD1 ASP 24 A ASP 24 1_555 B K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? 
metalc ? metalc4 A O ASN 196 A ASN 196 1_555 B K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.439 ? 
metalc ? metalc5 A OD1 ASN 196 A ASN 196 1_555 B K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? 
metalc ? metalc6 A OG SER 199 A SER 199 1_555 B K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 237 n n 
C10 C9 OLC doub 238 n n 
C10 C11 OLC sing 239 n n 
C9 C8 OLC sing 240 n n 
C17 C16 OLC sing 241 z n 
C11 C12 OLC sing 242 n n 
C8 C7 OLC sing 243 n n 
C24 C22 OLC sing 244 n n 
C24 O25 OLC sing 245 n n 
C16 C15 OLC sing 246 n n 
C12 C13 OLC sing 247 n n 
C7 C6 OLC sing 248 n n 
C15 C14 OLC sing 249 n n 
C13 C14 OLC sing 250 n n 
C6 C5 OLC sing 251 n n 
C5 C4 OLC sing 252 n n 
C4 C3 OLC sing 253 n n 
C3 C2 OLC sing 254 n n 
C2 C1 OLC sing 255 n n 
C21 C22 OLC sing 256 n n 
C21 O20 OLC sing 257 n n 
C1 O19 OLC doub 258 n n 
C1 O20 OLC sing 259 n n 
C22 O23 OLC sing 260 n n 
C18 H18 OLC sing 261 n n 
C18 H18A OLC sing 262 n n 
C18 H18B OLC sing 263 n n 
C10 H10 OLC sing 264 n n 
C9 H9 OLC sing 265 n n 
C17 H17 OLC sing 266 n n 
C17 H17A OLC sing 267 n n 
C11 H11 OLC sing 268 n n 
C11 H11A OLC sing 269 n n 
C8 H8 OLC sing 270 n n 
C8 H8A OLC sing 271 n n 
C24 H24 OLC sing 272 n n 
C24 H24A OLC sing 273 n n 
C16 H16 OLC sing 274 n n 
C16 H16A OLC sing 275 n n 
C12 H12 OLC sing 276 n n 
C12 H12A OLC sing 277 n n 
C7 H7 OLC sing 278 n n 
C7 H7A OLC sing 279 n n 
C15 H15 OLC sing 280 n n 
C15 H15A OLC sing 281 n n 
C13 H13 OLC sing 282 n n 
C13 H13A OLC sing 283 n n 
C6 H6 OLC sing 284 n n 
C6 H6A OLC sing 285 n n 
C14 H14 OLC sing 286 n n 
C14 H14A OLC sing 287 n n 
C5 H5 OLC sing 288 n n 
C5 H5A OLC sing 289 n n 
C4 H4 OLC sing 290 n n 
C4 H4A OLC sing 291 n n 
C3 H3 OLC sing 292 n n 
C3 H3A OLC sing 293 n n 
C2 H2 OLC sing 294 n n 
C2 H2A OLC sing 295 n n 
C21 H21 OLC sing 296 n n 
C21 H21A OLC sing 297 n n 
C22 H22 OLC sing 298 n n 
O25 HO25 OLC sing 299 n n 
O23 HO23 OLC sing 300 n n 
#
_atom_sites.entry_id                     5AYN 
_atom_sites.fract_transf_matrix[1][1]    0.017656 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011816 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01033 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 K A 1 501 1 K K . 
C 3 OLC A 1 502 1 OLC OLC . 
D 3 OLC A 1 503 2 OLC OLC . 
E 3 OLC A 1 504 4 OLC OLC . 
F 3 OLC A 1 505 5 OLC OLC . 
G 3 OLC A 1 506 6 OLC OLC . 
H 3 OLC A 1 507 7 OLC OLC . 
I 3 OLC A 1 508 8 OLC OLC . 
J 3 OLC A 1 509 9 OLC OLC . 
K 3 OLC A 1 510 10 OLC OLC . 
L 4 HOH A 1 601 24 HOH HOH . 
L 4 HOH A 2 602 9 HOH HOH . 
L 4 HOH A 3 603 57 HOH HOH . 
L 4 HOH A 4 604 13 HOH HOH . 
L 4 HOH A 5 605 26 HOH HOH . 
L 4 HOH A 6 606 19 HOH HOH . 
L 4 HOH A 7 607 8 HOH HOH . 
L 4 HOH A 8 608 30 HOH HOH . 
L 4 HOH A 9 609 54 HOH HOH . 
L 4 HOH A 10 610 12 HOH HOH . 
L 4 HOH A 11 611 14 HOH HOH . 
L 4 HOH A 12 612 34 HOH HOH . 
L 4 HOH A 13 613 27 HOH HOH . 
L 4 HOH A 14 614 4 HOH HOH . 
L 4 HOH A 15 615 6 HOH HOH . 
L 4 HOH A 16 616 2 HOH HOH . 
L 4 HOH A 17 617 22 HOH HOH . 
L 4 HOH A 18 618 16 HOH HOH . 
L 4 HOH A 19 619 38 HOH HOH . 
L 4 HOH A 20 620 21 HOH HOH . 
L 4 HOH A 21 621 20 HOH HOH . 
L 4 HOH A 22 622 58 HOH HOH . 
L 4 HOH A 23 623 1 HOH HOH . 
L 4 HOH A 24 624 55 HOH HOH . 
L 4 HOH A 25 625 44 HOH HOH . 
L 4 HOH A 26 626 11 HOH HOH . 
L 4 HOH A 27 627 46 HOH HOH . 
L 4 HOH A 28 628 41 HOH HOH . 
L 4 HOH A 29 629 32 HOH HOH . 
L 4 HOH A 30 630 7 HOH HOH . 
L 4 HOH A 31 631 15 HOH HOH . 
L 4 HOH A 32 632 5 HOH HOH . 
L 4 HOH A 33 633 51 HOH HOH . 
L 4 HOH A 34 634 3 HOH HOH . 
L 4 HOH A 35 635 52 HOH HOH . 
L 4 HOH A 36 636 17 HOH HOH . 
L 4 HOH A 37 637 28 HOH HOH . 
L 4 HOH A 38 638 59 HOH HOH . 
L 4 HOH A 39 639 37 HOH HOH . 
L 4 HOH A 40 640 40 HOH HOH . 
L 4 HOH A 41 641 33 HOH HOH . 
L 4 HOH A 42 642 23 HOH HOH . 
L 4 HOH A 43 643 53 HOH HOH . 
L 4 HOH A 44 644 35 HOH HOH . 
L 4 HOH A 45 645 56 HOH HOH . 
L 4 HOH A 46 646 47 HOH HOH . 
L 4 HOH A 47 647 31 HOH HOH . 
L 4 HOH A 48 648 60 HOH HOH . 
L 4 HOH A 49 649 10 HOH HOH . 
L 4 HOH A 50 650 29 HOH HOH . 
L 4 HOH A 51 651 25 HOH HOH . 
L 4 HOH A 52 652 42 HOH HOH . 
L 4 HOH A 53 653 36 HOH HOH . 
L 4 HOH A 54 654 50 HOH HOH . 
L 4 HOH A 55 655 18 HOH HOH . 
L 4 HOH A 56 656 43 HOH HOH . 
L 4 HOH A 57 657 49 HOH HOH . 
L 4 HOH A 58 658 45 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 OLC . . . D 3 -17.356 -19.973 -17.737 1 38.8 ? C18 OLC 503 A 1 
HETATM 2 C C10 OLC . . . D 3 -14.09 -15.211 -11.236 1 44.63 ? C10 OLC 503 A 1 
HETATM 3 C C9 OLC . . . D 3 -13.567 -14.532 -10.191 1 43.17 ? C9 OLC 503 A 1 
HETATM 4 C C17 OLC . . . D 3 -17.018 -19.896 -16.262 1 53.15 ? C17 OLC 503 A 1 
HETATM 5 C C11 OLC . . . D 3 -13.559 -16.558 -11.685 1 40.9 ? C11 OLC 503 A 1 
HETATM 6 C C8 OLC . . . D 3 -12.397 -15.074 -9.41 1 46.47 ? C8 OLC 503 A 1 
HETATM 7 C C16 OLC . . . D 3 -15.684 -20.564 -16.008 1 57.01 ? C16 OLC 503 A 1 
HETATM 8 C C12 OLC . . . D 3 -14.595 -17.139 -12.632 1 42.04 ? C12 OLC 503 A 1 
HETATM 9 C C7 OLC . . . D 3 -12.054 -14.085 -8.317 1 52.99 ? C7 OLC 503 A 1 
HETATM 10 C C15 OLC . . . D 3 -15.218 -20.281 -14.592 1 59.48 ? C15 OLC 503 A 1 
HETATM 11 C C13 OLC . . . D 3 -14.288 -18.57 -13.035 1 47.98 ? C13 OLC 503 A 1 
HETATM 12 C C6 OLC . . . D 3 -13.236 -13.928 -7.381 1 51.22 ? C6 OLC 503 A 1 
HETATM 13 C C14 OLC . . . D 3 -14.825 -18.824 -14.436 1 47.04 ? C14 OLC 503 A 1 
HETATM 14 C C5 OLC . . . D 3 -13.479 -15.23 -6.647 1 48.21 ? C5 OLC 503 A 1 
HETATM 15 C C4 OLC . . . D 3 -13.64 -14.962 -5.162 1 54.67 ? C4 OLC 503 A 1 
HETATM 16 C C3 OLC . . . D 3 -12.488 -14.106 -4.675 1 56.44 ? C3 OLC 503 A 1 
HETATM 17 C C2 OLC . . . D 3 -12.347 -14.216 -3.171 1 63.35 ? C2 OLC 503 A 1 
HETATM 18 C C1 OLC . . . D 3 -10.941 -13.811 -2.78 1 67.7 ? C1 OLC 503 A 1 
HETATM 19 O O19 OLC . . . D 3 -10.656 -12.633 -2.647 1 63.04 ? O19 OLC 503 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           245 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           19 
#