data_5AYN # _model_server_result.job_id AV_UWYIutSW4z3EjCTx0-w _model_server_result.datetime_utc '2024-11-04 05:10:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ayn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":507}' # _entry.id 5AYN # _exptl.entry_id 5AYN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5AYN _cell.length_a 56.638 _cell.length_b 84.629 _cell.length_c 96.809 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AYN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 20 A THR 20 1_555 B K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc2 A OG1 THR 20 A THR 20 1_555 B K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? metalc ? metalc3 A OD1 ASP 24 A ASP 24 1_555 B K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc4 A O ASN 196 A ASN 196 1_555 B K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.439 ? metalc ? metalc5 A OD1 ASN 196 A ASN 196 1_555 B K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc6 A OG SER 199 A SER 199 1_555 B K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 237 n n C10 C9 OLC doub 238 n n C10 C11 OLC sing 239 n n C9 C8 OLC sing 240 n n C17 C16 OLC sing 241 z n C11 C12 OLC sing 242 n n C8 C7 OLC sing 243 n n C24 C22 OLC sing 244 n n C24 O25 OLC sing 245 n n C16 C15 OLC sing 246 n n C12 C13 OLC sing 247 n n C7 C6 OLC sing 248 n n C15 C14 OLC sing 249 n n C13 C14 OLC sing 250 n n C6 C5 OLC sing 251 n n C5 C4 OLC sing 252 n n C4 C3 OLC sing 253 n n C3 C2 OLC sing 254 n n C2 C1 OLC sing 255 n n C21 C22 OLC sing 256 n n C21 O20 OLC sing 257 n n C1 O19 OLC doub 258 n n C1 O20 OLC sing 259 n n C22 O23 OLC sing 260 n n C18 H18 OLC sing 261 n n C18 H18A OLC sing 262 n n C18 H18B OLC sing 263 n n C10 H10 OLC sing 264 n n C9 H9 OLC sing 265 n n C17 H17 OLC sing 266 n n C17 H17A OLC sing 267 n n C11 H11 OLC sing 268 n n C11 H11A OLC sing 269 n n C8 H8 OLC sing 270 n n C8 H8A OLC sing 271 n n C24 H24 OLC sing 272 n n C24 H24A OLC sing 273 n n C16 H16 OLC sing 274 n n C16 H16A OLC sing 275 n n C12 H12 OLC sing 276 n n C12 H12A OLC sing 277 n n C7 H7 OLC sing 278 n n C7 H7A OLC sing 279 n n C15 H15 OLC sing 280 n n C15 H15A OLC sing 281 n n C13 H13 OLC sing 282 n n C13 H13A OLC sing 283 n n C6 H6 OLC sing 284 n n C6 H6A OLC sing 285 n n C14 H14 OLC sing 286 n n C14 H14A OLC sing 287 n n C5 H5 OLC sing 288 n n C5 H5A OLC sing 289 n n C4 H4 OLC sing 290 n n C4 H4A OLC sing 291 n n C3 H3 OLC sing 292 n n C3 H3A OLC sing 293 n n C2 H2 OLC sing 294 n n C2 H2A OLC sing 295 n n C21 H21 OLC sing 296 n n C21 H21A OLC sing 297 n n C22 H22 OLC sing 298 n n O25 HO25 OLC sing 299 n n O23 HO23 OLC sing 300 n n # _atom_sites.entry_id 5AYN _atom_sites.fract_transf_matrix[1][1] 0.017656 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011816 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01033 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K A 1 501 1 K K . C 3 OLC A 1 502 1 OLC OLC . D 3 OLC A 1 503 2 OLC OLC . E 3 OLC A 1 504 4 OLC OLC . F 3 OLC A 1 505 5 OLC OLC . G 3 OLC A 1 506 6 OLC OLC . H 3 OLC A 1 507 7 OLC OLC . I 3 OLC A 1 508 8 OLC OLC . J 3 OLC A 1 509 9 OLC OLC . K 3 OLC A 1 510 10 OLC OLC . L 4 HOH A 1 601 24 HOH HOH . L 4 HOH A 2 602 9 HOH HOH . L 4 HOH A 3 603 57 HOH HOH . L 4 HOH A 4 604 13 HOH HOH . L 4 HOH A 5 605 26 HOH HOH . L 4 HOH A 6 606 19 HOH HOH . L 4 HOH A 7 607 8 HOH HOH . L 4 HOH A 8 608 30 HOH HOH . L 4 HOH A 9 609 54 HOH HOH . L 4 HOH A 10 610 12 HOH HOH . L 4 HOH A 11 611 14 HOH HOH . L 4 HOH A 12 612 34 HOH HOH . L 4 HOH A 13 613 27 HOH HOH . L 4 HOH A 14 614 4 HOH HOH . L 4 HOH A 15 615 6 HOH HOH . L 4 HOH A 16 616 2 HOH HOH . L 4 HOH A 17 617 22 HOH HOH . L 4 HOH A 18 618 16 HOH HOH . L 4 HOH A 19 619 38 HOH HOH . L 4 HOH A 20 620 21 HOH HOH . L 4 HOH A 21 621 20 HOH HOH . L 4 HOH A 22 622 58 HOH HOH . L 4 HOH A 23 623 1 HOH HOH . L 4 HOH A 24 624 55 HOH HOH . L 4 HOH A 25 625 44 HOH HOH . L 4 HOH A 26 626 11 HOH HOH . L 4 HOH A 27 627 46 HOH HOH . L 4 HOH A 28 628 41 HOH HOH . L 4 HOH A 29 629 32 HOH HOH . L 4 HOH A 30 630 7 HOH HOH . L 4 HOH A 31 631 15 HOH HOH . L 4 HOH A 32 632 5 HOH HOH . L 4 HOH A 33 633 51 HOH HOH . L 4 HOH A 34 634 3 HOH HOH . L 4 HOH A 35 635 52 HOH HOH . L 4 HOH A 36 636 17 HOH HOH . L 4 HOH A 37 637 28 HOH HOH . L 4 HOH A 38 638 59 HOH HOH . L 4 HOH A 39 639 37 HOH HOH . L 4 HOH A 40 640 40 HOH HOH . L 4 HOH A 41 641 33 HOH HOH . L 4 HOH A 42 642 23 HOH HOH . L 4 HOH A 43 643 53 HOH HOH . L 4 HOH A 44 644 35 HOH HOH . L 4 HOH A 45 645 56 HOH HOH . L 4 HOH A 46 646 47 HOH HOH . L 4 HOH A 47 647 31 HOH HOH . L 4 HOH A 48 648 60 HOH HOH . L 4 HOH A 49 649 10 HOH HOH . L 4 HOH A 50 650 29 HOH HOH . L 4 HOH A 51 651 25 HOH HOH . L 4 HOH A 52 652 42 HOH HOH . L 4 HOH A 53 653 36 HOH HOH . L 4 HOH A 54 654 50 HOH HOH . L 4 HOH A 55 655 18 HOH HOH . L 4 HOH A 56 656 43 HOH HOH . L 4 HOH A 57 657 49 HOH HOH . L 4 HOH A 58 658 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . H 3 28.315 -6.622 -16.201 1 47.3 ? C10 OLC 507 A 1 HETATM 2 C C9 OLC . . . H 3 27.586 -5.552 -15.828 1 40.12 ? C9 OLC 507 A 1 HETATM 3 C C11 OLC . . . H 3 29.737 -6.799 -15.704 1 53.61 ? C11 OLC 507 A 1 HETATM 4 C C8 OLC . . . H 3 28.201 -4.514 -14.919 1 52.37 ? C8 OLC 507 A 1 HETATM 5 C C16 OLC . . . H 3 31.499 -11.31 -17.163 1 43.38 ? C16 OLC 507 A 1 HETATM 6 C C12 OLC . . . H 3 30.19 -8.209 -16.021 1 48.94 ? C12 OLC 507 A 1 HETATM 7 C C7 OLC . . . H 3 27.12 -3.802 -14.141 1 48.63 ? C7 OLC 507 A 1 HETATM 8 C C15 OLC . . . H 3 31.835 -10.785 -15.781 1 42.28 ? C15 OLC 507 A 1 HETATM 9 C C13 OLC . . . H 3 30.542 -8.953 -14.747 1 46.16 ? C13 OLC 507 A 1 HETATM 10 C C6 OLC . . . H 3 27.768 -3.143 -12.944 1 46.33 ? C6 OLC 507 A 1 HETATM 11 C C14 OLC . . . H 3 30.563 -10.436 -15.044 1 35.18 ? C14 OLC 507 A 1 HETATM 12 C C5 OLC . . . H 3 26.797 -2.158 -12.334 1 52.07 ? C5 OLC 507 A 1 HETATM 13 C C4 OLC . . . H 3 27.376 -1.613 -11.046 1 50.39 ? C4 OLC 507 A 1 HETATM 14 C C3 OLC . . . H 3 27.263 -2.665 -9.968 1 44.13 ? C3 OLC 507 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #