data_5AYU
#
_model_server_result.job_id            ofZbfoRFIyCTQ2Oiphnc6Q 
_model_server_result.datetime_utc      '2024-12-26 11:45:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ayu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    5AYU 
#
_exptl.entry_id    5AYU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5AYU 
_cell.length_a            65.822 
_cell.length_b            65.822 
_cell.length_c            96.321 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5AYU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
disulf ? disulf2 B SG CYS 22 H CYS 22 1_555 B SG CYS 95 H CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5AYU 
_atom_sites.fract_transf_matrix[1][1]    0.015192 
_atom_sites.fract_transf_matrix[1][2]    0.008771 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017543 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010382 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL L 1 2001 2001 GOL GOL . 
D 3 GOL H 1 201 2002 GOL GOL . 
E 3 GOL H 1 202 2003 GOL GOL . 
F 3 GOL H 1 203 2004 GOL GOL . 
G 4 HOH L 1 2101 1137 HOH HOH . 
G 4 HOH L 2 2102 1101 HOH HOH . 
G 4 HOH L 3 2103 1096 HOH HOH . 
G 4 HOH L 4 2104 1151 HOH HOH . 
G 4 HOH L 5 2105 1165 HOH HOH . 
G 4 HOH L 6 2106 1131 HOH HOH . 
G 4 HOH L 7 2107 1166 HOH HOH . 
G 4 HOH L 8 2108 1006 HOH HOH . 
G 4 HOH L 9 2109 1052 HOH HOH . 
G 4 HOH L 10 2110 1087 HOH HOH . 
G 4 HOH L 11 2111 1123 HOH HOH . 
G 4 HOH L 12 2112 1118 HOH HOH . 
G 4 HOH L 13 2113 1026 HOH HOH . 
G 4 HOH L 14 2114 1066 HOH HOH . 
G 4 HOH L 15 2115 1083 HOH HOH . 
G 4 HOH L 16 2116 1146 HOH HOH . 
G 4 HOH L 17 2117 1049 HOH HOH . 
G 4 HOH L 18 2118 1027 HOH HOH . 
G 4 HOH L 19 2119 1054 HOH HOH . 
G 4 HOH L 20 2120 1145 HOH HOH . 
G 4 HOH L 21 2121 1084 HOH HOH . 
G 4 HOH L 22 2122 1104 HOH HOH . 
G 4 HOH L 23 2123 1111 HOH HOH . 
G 4 HOH L 24 2124 1011 HOH HOH . 
G 4 HOH L 25 2125 1117 HOH HOH . 
G 4 HOH L 26 2126 1010 HOH HOH . 
G 4 HOH L 27 2127 1102 HOH HOH . 
G 4 HOH L 28 2128 1014 HOH HOH . 
G 4 HOH L 29 2129 1001 HOH HOH . 
G 4 HOH L 30 2130 1059 HOH HOH . 
G 4 HOH L 31 2131 1106 HOH HOH . 
G 4 HOH L 32 2132 1076 HOH HOH . 
G 4 HOH L 33 2133 1098 HOH HOH . 
G 4 HOH L 34 2134 1004 HOH HOH . 
G 4 HOH L 35 2135 1016 HOH HOH . 
G 4 HOH L 36 2136 1133 HOH HOH . 
G 4 HOH L 37 2137 1013 HOH HOH . 
G 4 HOH L 38 2138 1072 HOH HOH . 
G 4 HOH L 39 2139 1127 HOH HOH . 
G 4 HOH L 40 2140 1063 HOH HOH . 
G 4 HOH L 41 2141 1116 HOH HOH . 
G 4 HOH L 42 2142 1053 HOH HOH . 
G 4 HOH L 43 2143 1149 HOH HOH . 
G 4 HOH L 44 2144 1012 HOH HOH . 
G 4 HOH L 45 2145 1002 HOH HOH . 
G 4 HOH L 46 2146 1077 HOH HOH . 
G 4 HOH L 47 2147 1007 HOH HOH . 
G 4 HOH L 48 2148 1003 HOH HOH . 
G 4 HOH L 49 2149 1071 HOH HOH . 
G 4 HOH L 50 2150 1147 HOH HOH . 
G 4 HOH L 51 2151 1023 HOH HOH . 
G 4 HOH L 52 2152 1050 HOH HOH . 
G 4 HOH L 53 2153 1069 HOH HOH . 
G 4 HOH L 54 2154 1056 HOH HOH . 
G 4 HOH L 55 2155 1142 HOH HOH . 
G 4 HOH L 56 2156 1041 HOH HOH . 
G 4 HOH L 57 2157 1100 HOH HOH . 
G 4 HOH L 58 2158 1061 HOH HOH . 
G 4 HOH L 59 2159 1141 HOH HOH . 
G 4 HOH L 60 2160 1034 HOH HOH . 
G 4 HOH L 61 2161 1037 HOH HOH . 
G 4 HOH L 62 2162 1089 HOH HOH . 
G 4 HOH L 63 2163 1018 HOH HOH . 
G 4 HOH L 64 2164 1043 HOH HOH . 
G 4 HOH L 65 2165 1156 HOH HOH . 
G 4 HOH L 66 2166 1093 HOH HOH . 
G 4 HOH L 67 2167 1092 HOH HOH . 
G 4 HOH L 68 2168 1047 HOH HOH . 
G 4 HOH L 69 2169 1055 HOH HOH . 
G 4 HOH L 70 2170 1113 HOH HOH . 
G 4 HOH L 71 2171 1073 HOH HOH . 
G 4 HOH L 72 2172 1067 HOH HOH . 
G 4 HOH L 73 2173 1124 HOH HOH . 
G 4 HOH L 74 2174 1099 HOH HOH . 
G 4 HOH L 75 2175 1086 HOH HOH . 
G 4 HOH L 76 2176 1114 HOH HOH . 
G 4 HOH L 77 2177 1057 HOH HOH . 
G 4 HOH L 78 2178 1025 HOH HOH . 
G 4 HOH L 79 2179 1129 HOH HOH . 
G 4 HOH L 80 2180 1119 HOH HOH . 
G 4 HOH L 81 2181 1134 HOH HOH . 
G 4 HOH L 82 2182 1168 HOH HOH . 
G 4 HOH L 83 2183 1135 HOH HOH . 
G 4 HOH L 84 2184 1170 HOH HOH . 
G 4 HOH L 85 2185 1163 HOH HOH . 
G 4 HOH L 86 2186 1108 HOH HOH . 
G 4 HOH L 87 2187 1164 HOH HOH . 
G 4 HOH L 88 2188 1153 HOH HOH . 
G 4 HOH L 89 2189 1062 HOH HOH . 
G 4 HOH L 90 2190 1110 HOH HOH . 
G 4 HOH L 91 2191 1130 HOH HOH . 
G 4 HOH L 92 2192 1138 HOH HOH . 
G 4 HOH L 93 2193 1136 HOH HOH . 
G 4 HOH L 94 2194 1161 HOH HOH . 
H 4 HOH H 1 301 1065 HOH HOH . 
H 4 HOH H 2 302 1019 HOH HOH . 
H 4 HOH H 3 303 1022 HOH HOH . 
H 4 HOH H 4 304 1158 HOH HOH . 
H 4 HOH H 5 305 1115 HOH HOH . 
H 4 HOH H 6 306 1033 HOH HOH . 
H 4 HOH H 7 307 1051 HOH HOH . 
H 4 HOH H 8 308 1045 HOH HOH . 
H 4 HOH H 9 309 1122 HOH HOH . 
H 4 HOH H 10 310 1048 HOH HOH . 
H 4 HOH H 11 311 1107 HOH HOH . 
H 4 HOH H 12 312 1103 HOH HOH . 
H 4 HOH H 13 313 1028 HOH HOH . 
H 4 HOH H 14 314 1160 HOH HOH . 
H 4 HOH H 15 315 1120 HOH HOH . 
H 4 HOH H 16 316 1058 HOH HOH . 
H 4 HOH H 17 317 1082 HOH HOH . 
H 4 HOH H 18 318 1064 HOH HOH . 
H 4 HOH H 19 319 1031 HOH HOH . 
H 4 HOH H 20 320 1157 HOH HOH . 
H 4 HOH H 21 321 1112 HOH HOH . 
H 4 HOH H 22 322 1074 HOH HOH . 
H 4 HOH H 23 323 1169 HOH HOH . 
H 4 HOH H 24 324 1080 HOH HOH . 
H 4 HOH H 25 325 1009 HOH HOH . 
H 4 HOH H 26 326 1060 HOH HOH . 
H 4 HOH H 27 327 1070 HOH HOH . 
H 4 HOH H 28 328 1128 HOH HOH . 
H 4 HOH H 29 329 1139 HOH HOH . 
H 4 HOH H 30 330 1015 HOH HOH . 
H 4 HOH H 31 331 1046 HOH HOH . 
H 4 HOH H 32 332 1079 HOH HOH . 
H 4 HOH H 33 333 1044 HOH HOH . 
H 4 HOH H 34 334 1017 HOH HOH . 
H 4 HOH H 35 335 1088 HOH HOH . 
H 4 HOH H 36 336 1040 HOH HOH . 
H 4 HOH H 37 337 1091 HOH HOH . 
H 4 HOH H 38 338 1032 HOH HOH . 
H 4 HOH H 39 339 1008 HOH HOH . 
H 4 HOH H 40 340 1021 HOH HOH . 
H 4 HOH H 41 341 1144 HOH HOH . 
H 4 HOH H 42 342 1005 HOH HOH . 
H 4 HOH H 43 343 1078 HOH HOH . 
H 4 HOH H 44 344 1148 HOH HOH . 
H 4 HOH H 45 345 1020 HOH HOH . 
H 4 HOH H 46 346 1085 HOH HOH . 
H 4 HOH H 47 347 1042 HOH HOH . 
H 4 HOH H 48 348 1155 HOH HOH . 
H 4 HOH H 49 349 1125 HOH HOH . 
H 4 HOH H 50 350 1029 HOH HOH . 
H 4 HOH H 51 351 1030 HOH HOH . 
H 4 HOH H 52 352 1081 HOH HOH . 
H 4 HOH H 53 353 1024 HOH HOH . 
H 4 HOH H 54 354 1068 HOH HOH . 
H 4 HOH H 55 355 1036 HOH HOH . 
H 4 HOH H 56 356 1035 HOH HOH . 
H 4 HOH H 57 357 1143 HOH HOH . 
H 4 HOH H 58 358 1039 HOH HOH . 
H 4 HOH H 59 359 1109 HOH HOH . 
H 4 HOH H 60 360 1075 HOH HOH . 
H 4 HOH H 61 361 1150 HOH HOH . 
H 4 HOH H 62 362 1097 HOH HOH . 
H 4 HOH H 63 363 1038 HOH HOH . 
H 4 HOH H 64 364 1090 HOH HOH . 
H 4 HOH H 65 365 1159 HOH HOH . 
H 4 HOH H 66 366 1095 HOH HOH . 
H 4 HOH H 67 367 1121 HOH HOH . 
H 4 HOH H 68 368 1105 HOH HOH . 
H 4 HOH H 69 369 1126 HOH HOH . 
H 4 HOH H 70 370 1094 HOH HOH . 
H 4 HOH H 71 371 1132 HOH HOH . 
H 4 HOH H 72 372 1140 HOH HOH . 
H 4 HOH H 73 373 1154 HOH HOH . 
H 4 HOH H 74 374 1167 HOH HOH . 
H 4 HOH H 75 375 1152 HOH HOH . 
H 4 HOH H 76 376 1162 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 -14.154 55.444 -10.398 1 41.96 ? C1 GOL 201 H 1 
HETATM 2 O O1 GOL . . . D 3 -14.608 56.551 -11.153 1 46.56 ? O1 GOL 201 H 1 
HETATM 3 C C2 GOL . . . D 3 -15.384 54.842 -9.726 1 42.36 ? C2 GOL 201 H 1 
HETATM 4 O O2 GOL . . . D 3 -15.391 53.44 -9.839 1 43.71 ? O2 GOL 201 H 1 
HETATM 5 C C3 GOL . . . D 3 -15.39 55.187 -8.256 1 41.01 ? C3 GOL 201 H 1 
HETATM 6 O O3 GOL . . . D 3 -14.192 54.698 -7.71 1 34.77 ? O3 GOL 201 H 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#