data_5AYY
#
_model_server_result.job_id            SID0WoqKnJbg3Rzm6cZ8xw 
_model_server_result.datetime_utc      '2024-11-23 16:26:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ayy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":401}' 
#
_entry.id    5AYY 
#
_exptl.entry_id    5AYY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              167.119 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'QUINOLINIC ACID' 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5AYY 
_cell.length_a            174.245 
_cell.length_b            174.245 
_cell.length_c            211.684 
_cell.Z_PDB               54 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5AYY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA hexameric 6 author_and_software_defined_assembly 1 
PISA hexameric 6 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G,H,I,J,L,M,P,Q,R,S,U,V,Y,Z,AA 1 1 
B,E,F,K,N,O,T,W,X 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
#
_chem_comp.formula           'C7 H5 N O4' 
_chem_comp.formula_weight    167.119 
_chem_comp.id                NTM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'QUINOLINIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 NTM doub 237 n y 
N1 C6 NTM sing 238 n y 
C2 C3 NTM sing 239 n y 
C2 C7 NTM sing 240 n n 
C3 C4 NTM doub 241 n y 
C3 C8 NTM sing 242 n n 
C4 C5 NTM sing 243 n y 
C4 H4 NTM sing 244 n n 
C5 C6 NTM doub 245 n y 
C5 H5 NTM sing 246 n n 
C6 H6 NTM sing 247 n n 
C7 O1 NTM doub 248 n n 
C7 O2 NTM sing 249 n n 
O2 HO2 NTM sing 250 n n 
C8 O3 NTM doub 251 n n 
C8 O4 NTM sing 252 n n 
O4 HO4 NTM sing 253 n n 
#
_atom_sites.entry_id                     5AYY 
_atom_sites.fract_transf_matrix[1][1]    0.005739 
_atom_sites.fract_transf_matrix[1][2]    0.003313 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006627 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004724 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 2 NTM A 1 401 401 NTM NTM . 
K 2 NTM B 1 401 401 NTM NTM . 
L 2 NTM C 1 401 401 NTM NTM . 
M 2 NTM D 1 401 401 NTM NTM . 
N 2 NTM E 1 401 401 NTM NTM . 
O 2 NTM F 1 401 401 NTM NTM . 
P 2 NTM G 1 401 401 NTM NTM . 
Q 2 NTM H 1 401 401 NTM NTM . 
R 2 NTM I 1 401 401 NTM NTM . 
S 3 HOH A 1 501 501 HOH HOH . 
T 3 HOH B 1 501 501 HOH HOH . 
U 3 HOH C 1 501 501 HOH HOH . 
U 3 HOH C 2 502 502 HOH HOH . 
U 3 HOH C 3 503 503 HOH HOH . 
U 3 HOH C 4 504 504 HOH HOH . 
U 3 HOH C 5 505 505 HOH HOH . 
V 3 HOH D 1 501 501 HOH HOH . 
V 3 HOH D 2 502 502 HOH HOH . 
V 3 HOH D 3 503 503 HOH HOH . 
V 3 HOH D 4 504 504 HOH HOH . 
V 3 HOH D 5 505 505 HOH HOH . 
V 3 HOH D 6 506 506 HOH HOH . 
V 3 HOH D 7 507 507 HOH HOH . 
W 3 HOH E 1 501 501 HOH HOH . 
W 3 HOH E 2 502 502 HOH HOH . 
W 3 HOH E 3 503 503 HOH HOH . 
W 3 HOH E 4 504 504 HOH HOH . 
W 3 HOH E 5 505 505 HOH HOH . 
W 3 HOH E 6 506 506 HOH HOH . 
X 3 HOH F 1 501 501 HOH HOH . 
X 3 HOH F 2 502 502 HOH HOH . 
X 3 HOH F 3 503 503 HOH HOH . 
Y 3 HOH G 1 501 501 HOH HOH . 
Z 3 HOH H 1 501 501 HOH HOH . 
Z 3 HOH H 2 502 502 HOH HOH . 
Z 3 HOH H 3 503 503 HOH HOH . 
Z 3 HOH H 4 504 504 HOH HOH . 
Z 3 HOH H 5 505 505 HOH HOH . 
Z 3 HOH H 6 506 506 HOH HOH . 
Z 3 HOH H 7 507 507 HOH HOH . 
Z 3 HOH H 8 508 508 HOH HOH . 
Z 3 HOH H 9 509 509 HOH HOH . 
AA 3 HOH I 1 501 501 HOH HOH . 
AA 3 HOH I 2 502 502 HOH HOH . 
AA 3 HOH I 3 503 503 HOH HOH . 
AA 3 HOH I 4 504 504 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 NTM . . . L 2 57.453 25.319 -14.914 1 50.09 ? N1 NTM 401 C 1 
HETATM 2 C C2 NTM . . . L 2 58.8 25.44 -14.801 1 46.02 ? C2 NTM 401 C 1 
HETATM 3 C C3 NTM . . . L 2 59.626 24.219 -14.616 1 45.32 ? C3 NTM 401 C 1 
HETATM 4 C C4 NTM . . . L 2 58.974 22.987 -14.581 1 44.96 ? C4 NTM 401 C 1 
HETATM 5 C C5 NTM . . . L 2 57.59 22.927 -14.713 0.53 44.92 ? C5 NTM 401 C 1 
HETATM 6 C C6 NTM . . . L 2 56.854 24.1 -14.881 1 47.77 ? C6 NTM 401 C 1 
HETATM 7 C C7 NTM . . . L 2 59.381 26.8 -14.814 0.32 44.99 ? C7 NTM 401 C 1 
HETATM 8 O O1 NTM . . . L 2 58.942 27.639 -15.591 1 45.26 ? O1 NTM 401 C 1 
HETATM 9 O O2 NTM . . . L 2 60.254 27.07 -13.987 1 43.12 ? O2 NTM 401 C 1 
HETATM 10 C C8 NTM . . . L 2 61.116 24.258 -14.519 1 47.06 ? C8 NTM 401 C 1 
HETATM 11 O O3 NTM . . . L 2 61.738 24.985 -15.31 1 45.15 ? O3 NTM 401 C 1 
HETATM 12 O O4 NTM . . . L 2 61.729 23.525 -13.725 0.93 53.03 ? O4 NTM 401 C 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           12 
#