data_5AYY # _model_server_result.job_id I-08amgK_S8d0IWXQAio9A _model_server_result.datetime_utc '2024-10-27 20:18:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ayy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":401}' # _entry.id 5AYY # _exptl.entry_id 5AYY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 167.119 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'QUINOLINIC ACID' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5AYY _cell.length_a 174.245 _cell.length_b 174.245 _cell.length_c 211.684 _cell.Z_PDB 54 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AYY _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G,H,I,J,L,M,P,Q,R,S,U,V,Y,Z,AA 1 1 B,E,F,K,N,O,T,W,X 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N # _chem_comp.formula 'C7 H5 N O4' _chem_comp.formula_weight 167.119 _chem_comp.id NTM _chem_comp.mon_nstd_flag . _chem_comp.name 'QUINOLINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 NTM doub 237 n y N1 C6 NTM sing 238 n y C2 C3 NTM sing 239 n y C2 C7 NTM sing 240 n n C3 C4 NTM doub 241 n y C3 C8 NTM sing 242 n n C4 C5 NTM sing 243 n y C4 H4 NTM sing 244 n n C5 C6 NTM doub 245 n y C5 H5 NTM sing 246 n n C6 H6 NTM sing 247 n n C7 O1 NTM doub 248 n n C7 O2 NTM sing 249 n n O2 HO2 NTM sing 250 n n C8 O3 NTM doub 251 n n C8 O4 NTM sing 252 n n O4 HO4 NTM sing 253 n n # _atom_sites.entry_id 5AYY _atom_sites.fract_transf_matrix[1][1] 0.005739 _atom_sites.fract_transf_matrix[1][2] 0.003313 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006627 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004724 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 2 NTM A 1 401 401 NTM NTM . K 2 NTM B 1 401 401 NTM NTM . L 2 NTM C 1 401 401 NTM NTM . M 2 NTM D 1 401 401 NTM NTM . N 2 NTM E 1 401 401 NTM NTM . O 2 NTM F 1 401 401 NTM NTM . P 2 NTM G 1 401 401 NTM NTM . Q 2 NTM H 1 401 401 NTM NTM . R 2 NTM I 1 401 401 NTM NTM . S 3 HOH A 1 501 501 HOH HOH . T 3 HOH B 1 501 501 HOH HOH . U 3 HOH C 1 501 501 HOH HOH . U 3 HOH C 2 502 502 HOH HOH . U 3 HOH C 3 503 503 HOH HOH . U 3 HOH C 4 504 504 HOH HOH . U 3 HOH C 5 505 505 HOH HOH . V 3 HOH D 1 501 501 HOH HOH . V 3 HOH D 2 502 502 HOH HOH . V 3 HOH D 3 503 503 HOH HOH . V 3 HOH D 4 504 504 HOH HOH . V 3 HOH D 5 505 505 HOH HOH . V 3 HOH D 6 506 506 HOH HOH . V 3 HOH D 7 507 507 HOH HOH . W 3 HOH E 1 501 501 HOH HOH . W 3 HOH E 2 502 502 HOH HOH . W 3 HOH E 3 503 503 HOH HOH . W 3 HOH E 4 504 504 HOH HOH . W 3 HOH E 5 505 505 HOH HOH . W 3 HOH E 6 506 506 HOH HOH . X 3 HOH F 1 501 501 HOH HOH . X 3 HOH F 2 502 502 HOH HOH . X 3 HOH F 3 503 503 HOH HOH . Y 3 HOH G 1 501 501 HOH HOH . Z 3 HOH H 1 501 501 HOH HOH . Z 3 HOH H 2 502 502 HOH HOH . Z 3 HOH H 3 503 503 HOH HOH . Z 3 HOH H 4 504 504 HOH HOH . Z 3 HOH H 5 505 505 HOH HOH . Z 3 HOH H 6 506 506 HOH HOH . Z 3 HOH H 7 507 507 HOH HOH . Z 3 HOH H 8 508 508 HOH HOH . Z 3 HOH H 9 509 509 HOH HOH . AA 3 HOH I 1 501 501 HOH HOH . AA 3 HOH I 2 502 502 HOH HOH . AA 3 HOH I 3 503 503 HOH HOH . AA 3 HOH I 4 504 504 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NTM . . . O 2 13.958 -33.52 11.038 1 58.78 ? N1 NTM 401 F 1 HETATM 2 C C2 NTM . . . O 2 13.244 -32.589 10.333 0.54 63.13 ? C2 NTM 401 F 1 HETATM 3 C C3 NTM . . . O 2 13.089 -31.193 10.888 1 56.43 ? C3 NTM 401 F 1 HETATM 4 C C4 NTM . . . O 2 13.701 -30.946 12.105 1 56.8 ? C4 NTM 401 F 1 HETATM 5 C C5 NTM . . . O 2 14.403 -31.95 12.767 0.78 56.79 ? C5 NTM 401 F 1 HETATM 6 C C6 NTM . . . O 2 14.519 -33.227 12.216 0.79 57.43 ? C6 NTM 401 F 1 HETATM 7 C C7 NTM . . . O 2 12.633 -33.026 9.026 1 71.7 ? C7 NTM 401 F 1 HETATM 8 O O1 NTM . . . O 2 13.163 -33.954 8.38 1 82.99 ? O1 NTM 401 F 1 HETATM 9 O O2 NTM . . . O 2 11.591 -32.49 8.613 1 68.48 ? O2 NTM 401 F 1 HETATM 10 C C8 NTM . . . O 2 12.357 -30.04 10.233 0.44 51.58 ? C8 NTM 401 F 1 HETATM 11 O O3 NTM . . . O 2 12.553 -29.873 9.012 0.54 45.17 ? O3 NTM 401 F 1 HETATM 12 O O4 NTM . . . O 2 11.62 -29.245 10.889 0.66 47.15 ? O4 NTM 401 F 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #