data_5AZB # _model_server_result.job_id SSx7ymFK93Ni1TcLWOKYXQ _model_server_result.datetime_utc '2024-11-07 07:42:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5azb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5AZB # _exptl.entry_id 5AZB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5AZB _cell.length_a 50.413 _cell.length_b 60.973 _cell.length_c 117.72 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AZB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 5AZB _atom_sites.fract_transf_matrix[1][1] 0.019836 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016401 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008495 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLM A 1 301 299 PLM PLM . C 2 PLM A 1 302 300 PLM PLM . D 3 BOG A 1 303 301 BOG BOG . E 4 PGT A 1 304 302 PGT PGT . F 4 PGT A 1 305 303 PGT PGT . G 4 PGT A 1 306 304 PGT PGT . H 4 PGT A 1 307 305 PGT PGT . I 4 PGT A 1 308 306 PGT PGT . J 4 PGT A 1 309 307 PGT PGT . K 4 PGT A 1 310 308 PGT PGT . L 4 PGT A 1 311 309 PGT PGT . M 4 PGT A 1 312 310 PGT PGT . N 5 HOH A 1 401 514 HOH HOH . N 5 HOH A 2 402 555 HOH HOH . N 5 HOH A 3 403 546 HOH HOH . N 5 HOH A 4 404 536 HOH HOH . N 5 HOH A 5 405 543 HOH HOH . N 5 HOH A 6 406 572 HOH HOH . N 5 HOH A 7 407 544 HOH HOH . N 5 HOH A 8 408 557 HOH HOH . N 5 HOH A 9 409 583 HOH HOH . N 5 HOH A 10 410 554 HOH HOH . N 5 HOH A 11 411 585 HOH HOH . N 5 HOH A 12 412 584 HOH HOH . N 5 HOH A 13 413 567 HOH HOH . N 5 HOH A 14 414 504 HOH HOH . N 5 HOH A 15 415 586 HOH HOH . N 5 HOH A 16 416 525 HOH HOH . N 5 HOH A 17 417 523 HOH HOH . N 5 HOH A 18 418 552 HOH HOH . N 5 HOH A 19 419 534 HOH HOH . N 5 HOH A 20 420 594 HOH HOH . N 5 HOH A 21 421 539 HOH HOH . N 5 HOH A 22 422 561 HOH HOH . N 5 HOH A 23 423 547 HOH HOH . N 5 HOH A 24 424 573 HOH HOH . N 5 HOH A 25 425 517 HOH HOH . N 5 HOH A 26 426 571 HOH HOH . N 5 HOH A 27 427 590 HOH HOH . N 5 HOH A 28 428 527 HOH HOH . N 5 HOH A 29 429 599 HOH HOH . N 5 HOH A 30 430 558 HOH HOH . N 5 HOH A 31 431 587 HOH HOH . N 5 HOH A 32 432 521 HOH HOH . N 5 HOH A 33 433 533 HOH HOH . N 5 HOH A 34 434 579 HOH HOH . N 5 HOH A 35 435 602 HOH HOH . N 5 HOH A 36 436 526 HOH HOH . N 5 HOH A 37 437 588 HOH HOH . N 5 HOH A 38 438 570 HOH HOH . N 5 HOH A 39 439 545 HOH HOH . N 5 HOH A 40 440 548 HOH HOH . N 5 HOH A 41 441 513 HOH HOH . N 5 HOH A 42 442 556 HOH HOH . N 5 HOH A 43 443 501 HOH HOH . N 5 HOH A 44 444 512 HOH HOH . N 5 HOH A 45 445 518 HOH HOH . N 5 HOH A 46 446 535 HOH HOH . N 5 HOH A 47 447 541 HOH HOH . N 5 HOH A 48 448 542 HOH HOH . N 5 HOH A 49 449 503 HOH HOH . N 5 HOH A 50 450 553 HOH HOH . N 5 HOH A 51 451 507 HOH HOH . N 5 HOH A 52 452 509 HOH HOH . N 5 HOH A 53 453 565 HOH HOH . N 5 HOH A 54 454 510 HOH HOH . N 5 HOH A 55 455 549 HOH HOH . N 5 HOH A 56 456 506 HOH HOH . N 5 HOH A 57 457 592 HOH HOH . N 5 HOH A 58 458 563 HOH HOH . N 5 HOH A 59 459 529 HOH HOH . N 5 HOH A 60 460 597 HOH HOH . N 5 HOH A 61 461 511 HOH HOH . N 5 HOH A 62 462 593 HOH HOH . N 5 HOH A 63 463 505 HOH HOH . N 5 HOH A 64 464 538 HOH HOH . N 5 HOH A 65 465 566 HOH HOH . N 5 HOH A 66 466 516 HOH HOH . N 5 HOH A 67 467 530 HOH HOH . N 5 HOH A 68 468 508 HOH HOH . N 5 HOH A 69 469 528 HOH HOH . N 5 HOH A 70 470 515 HOH HOH . N 5 HOH A 71 471 596 HOH HOH . N 5 HOH A 72 472 562 HOH HOH . N 5 HOH A 73 473 568 HOH HOH . N 5 HOH A 74 474 502 HOH HOH . N 5 HOH A 75 475 598 HOH HOH . N 5 HOH A 76 476 601 HOH HOH . N 5 HOH A 77 477 519 HOH HOH . N 5 HOH A 78 478 520 HOH HOH . N 5 HOH A 79 479 531 HOH HOH . N 5 HOH A 80 480 589 HOH HOH . N 5 HOH A 81 481 578 HOH HOH . N 5 HOH A 82 482 532 HOH HOH . N 5 HOH A 83 483 574 HOH HOH . N 5 HOH A 84 484 591 HOH HOH . N 5 HOH A 85 485 582 HOH HOH . N 5 HOH A 86 486 559 HOH HOH . N 5 HOH A 87 487 524 HOH HOH . N 5 HOH A 88 488 576 HOH HOH . N 5 HOH A 89 489 564 HOH HOH . N 5 HOH A 90 490 575 HOH HOH . N 5 HOH A 91 491 560 HOH HOH . N 5 HOH A 92 492 577 HOH HOH . N 5 HOH A 93 493 581 HOH HOH . N 5 HOH A 94 494 551 HOH HOH . N 5 HOH A 95 495 550 HOH HOH . N 5 HOH A 96 496 540 HOH HOH . N 5 HOH A 97 497 580 HOH HOH . N 5 HOH A 98 498 569 HOH HOH . N 5 HOH A 99 499 595 HOH HOH . N 5 HOH A 100 500 522 HOH HOH . N 5 HOH A 101 501 603 HOH HOH . N 5 HOH A 102 502 600 HOH HOH . N 5 HOH A 103 503 537 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . D 3 -21.428 4.334 10.45 1 100.04 ? C1 BOG 303 A 1 HETATM 2 O O1 BOG . . . D 3 -22.196 3.556 9.634 1 87.59 ? O1 BOG 303 A 1 HETATM 3 C C2 BOG . . . D 3 -22.304 5.167 11.33 1 84.4 ? C2 BOG 303 A 1 HETATM 4 O O2 BOG . . . D 3 -23.026 6.089 10.531 1 60.11 ? O2 BOG 303 A 1 HETATM 5 C C3 BOG . . . D 3 -21.563 5.893 12.361 1 85.33 ? C3 BOG 303 A 1 HETATM 6 O O3 BOG . . . D 3 -22.482 6.572 13.226 1 66.13 ? O3 BOG 303 A 1 HETATM 7 C C4 BOG . . . D 3 -20.682 5.016 13.137 1 101.52 ? C4 BOG 303 A 1 HETATM 8 O O4 BOG . . . D 3 -19.952 5.783 14.085 1 48.34 ? O4 BOG 303 A 1 HETATM 9 C C5 BOG . . . D 3 -19.76 4.241 12.222 1 71.39 ? C5 BOG 303 A 1 HETATM 10 O O5 BOG . . . D 3 -20.479 3.497 11.207 1 42.3 ? O5 BOG 303 A 1 HETATM 11 C C6 BOG . . . D 3 -18.892 3.312 12.985 1 53.6 ? C6 BOG 303 A 1 HETATM 12 O O6 BOG . . . D 3 -19.498 2.347 13.739 1 40.19 ? O6 BOG 303 A 1 HETATM 13 C C1' BOG . . . D 3 -21.723 3.252 8.346 1 93.77 ? C1' BOG 303 A 1 HETATM 14 C C2' BOG . . . D 3 -21.627 1.763 7.96 1 41.77 ? C2' BOG 303 A 1 HETATM 15 C C3' BOG . . . D 3 -21.394 1.449 6.472 1 35.35 ? C3' BOG 303 A 1 HETATM 16 C C4' BOG . . . D 3 -22.628 1.417 5.572 1 55.58 ? C4' BOG 303 A 1 HETATM 17 C C5' BOG . . . D 3 -22.387 1.309 4.071 1 42.46 ? C5' BOG 303 A 1 HETATM 18 C C6' BOG . . . D 3 -23.287 0.388 3.269 1 83.4 ? C6' BOG 303 A 1 HETATM 19 C C7' BOG . . . D 3 -22.675 -0.307 2.103 1 44.63 ? C7' BOG 303 A 1 HETATM 20 C C8' BOG . . . D 3 -23.592 -0.85 1.026 1 45.28 ? C8' BOG 303 A 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #