data_5AZB # _model_server_result.job_id Ij7jz6Tbs420udLs2AKUQg _model_server_result.datetime_utc '2024-11-07 07:44:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5azb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":308}' # _entry.id 5AZB # _exptl.entry_id 5AZB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 751.023 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5AZB _cell.length_a 50.413 _cell.length_b 60.973 _cell.length_c 117.72 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AZB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N # _chem_comp.formula 'C40 H79 O10 P' _chem_comp.formula_weight 751.023 _chem_comp.id PGT _chem_comp.mon_nstd_flag . _chem_comp.name '(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PHOSPHATIDYLGLYCEROL;1-PALMITOYL-2-OLEOYL-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL)](SODIUM SALT)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C47 PGT sing 272 n n C48 H481 PGT sing 273 n n C48 H482 PGT sing 274 n n C48 H483 PGT sing 275 n n C47 C46 PGT sing 276 n n C47 H471 PGT sing 277 n n C47 H472 PGT sing 278 n n C46 C45 PGT sing 279 n n C46 H461 PGT sing 280 n n C46 H462 PGT sing 281 n n C45 C44 PGT sing 282 n n C45 H451 PGT sing 283 n n C45 H452 PGT sing 284 n n C44 C43 PGT sing 285 n n C44 H441 PGT sing 286 n n C44 H442 PGT sing 287 n n C43 C42 PGT sing 288 n n C43 H431 PGT sing 289 n n C43 H432 PGT sing 290 n n C42 C41 PGT sing 291 n n C42 H421 PGT sing 292 n n C42 H422 PGT sing 293 n n C41 C40 PGT sing 294 n n C41 H411 PGT sing 295 n n C41 H412 PGT sing 296 n n C40 C39 PGT sing 297 n n C40 H401 PGT sing 298 n n C40 H402 PGT sing 299 n n C39 C38 PGT sing 300 n n C39 H391 PGT sing 301 n n C39 H392 PGT sing 302 n n C38 C37 PGT sing 303 n n C38 H381 PGT sing 304 n n C38 H382 PGT sing 305 n n C37 C36 PGT sing 306 n n C37 H371 PGT sing 307 n n C37 H372 PGT sing 308 n n C36 C35 PGT sing 309 n n C36 H361 PGT sing 310 n n C36 H362 PGT sing 311 n n C35 C34 PGT sing 312 n n C35 H351 PGT sing 313 n n C35 H352 PGT sing 314 n n C34 C33 PGT sing 315 n n C34 H341 PGT sing 316 n n C34 H342 PGT sing 317 n n C33 C32 PGT sing 318 n n C33 H331 PGT sing 319 n n C33 H332 PGT sing 320 n n C32 C31 PGT sing 321 n n C32 H321 PGT sing 322 n n C32 H322 PGT sing 323 n n C31 O31 PGT doub 324 n n C31 O2 PGT sing 325 n n O2 C2 PGT sing 326 n n C2 C1 PGT sing 327 n n C2 C3 PGT sing 328 n n C2 H2 PGT sing 329 n n C1 O3P PGT sing 330 n n C1 H11 PGT sing 331 n n C1 H12 PGT sing 332 n n O3P P PGT sing 333 n n P O1P PGT doub 334 n n P O2P PGT sing 335 n n P O4P PGT sing 336 n n O2P HO2P PGT sing 337 n n O4P C4 PGT sing 338 n n C4 C5 PGT sing 339 n n C4 H41 PGT sing 340 n n C4 H42 PGT sing 341 n n C5 O5 PGT sing 342 n n C5 C6 PGT sing 343 n n C5 H5 PGT sing 344 n n O5 HO5 PGT sing 345 n n C6 O6 PGT sing 346 n n C6 H61 PGT sing 347 n n C6 H62 PGT sing 348 n n O6 HO6 PGT sing 349 n n C3 O3 PGT sing 350 n n C3 H31 PGT sing 351 n n C3 H32 PGT sing 352 n n O3 C11 PGT sing 353 n n C11 O11 PGT doub 354 n n C11 C12 PGT sing 355 n n C12 C13 PGT sing 356 n n C12 H121 PGT sing 357 n n C12 H122 PGT sing 358 n n C13 C14 PGT sing 359 n n C13 H131 PGT sing 360 n n C13 H132 PGT sing 361 n n C14 C15 PGT sing 362 n n C14 H141 PGT sing 363 n n C14 H142 PGT sing 364 n n C15 C16 PGT sing 365 n n C15 H151 PGT sing 366 n n C15 H152 PGT sing 367 n n C16 C17 PGT sing 368 n n C16 H161 PGT sing 369 n n C16 H162 PGT sing 370 n n C17 C18 PGT sing 371 n n C17 H171 PGT sing 372 n n C17 H172 PGT sing 373 n n C18 C19 PGT sing 374 n n C18 H181 PGT sing 375 n n C18 H182 PGT sing 376 n n C19 C20 PGT sing 377 n n C19 H191 PGT sing 378 n n C19 H192 PGT sing 379 n n C20 C21 PGT sing 380 n n C20 H201 PGT sing 381 n n C20 H202 PGT sing 382 n n C21 C22 PGT sing 383 n n C21 H211 PGT sing 384 n n C21 H212 PGT sing 385 n n C22 C23 PGT sing 386 n n C22 H221 PGT sing 387 n n C22 H222 PGT sing 388 n n C23 C24 PGT sing 389 n n C23 H231 PGT sing 390 n n C23 H232 PGT sing 391 n n C24 C25 PGT sing 392 n n C24 H241 PGT sing 393 n n C24 H242 PGT sing 394 n n C25 C26 PGT sing 395 n n C25 H251 PGT sing 396 n n C25 H252 PGT sing 397 n n C26 H261 PGT sing 398 n n C26 H262 PGT sing 399 n n C26 H263 PGT sing 400 n n # _atom_sites.entry_id 5AZB _atom_sites.fract_transf_matrix[1][1] 0.019836 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016401 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008495 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLM A 1 301 299 PLM PLM . C 2 PLM A 1 302 300 PLM PLM . D 3 BOG A 1 303 301 BOG BOG . E 4 PGT A 1 304 302 PGT PGT . F 4 PGT A 1 305 303 PGT PGT . G 4 PGT A 1 306 304 PGT PGT . H 4 PGT A 1 307 305 PGT PGT . I 4 PGT A 1 308 306 PGT PGT . J 4 PGT A 1 309 307 PGT PGT . K 4 PGT A 1 310 308 PGT PGT . L 4 PGT A 1 311 309 PGT PGT . M 4 PGT A 1 312 310 PGT PGT . N 5 HOH A 1 401 514 HOH HOH . N 5 HOH A 2 402 555 HOH HOH . N 5 HOH A 3 403 546 HOH HOH . N 5 HOH A 4 404 536 HOH HOH . N 5 HOH A 5 405 543 HOH HOH . N 5 HOH A 6 406 572 HOH HOH . N 5 HOH A 7 407 544 HOH HOH . N 5 HOH A 8 408 557 HOH HOH . N 5 HOH A 9 409 583 HOH HOH . N 5 HOH A 10 410 554 HOH HOH . N 5 HOH A 11 411 585 HOH HOH . N 5 HOH A 12 412 584 HOH HOH . N 5 HOH A 13 413 567 HOH HOH . N 5 HOH A 14 414 504 HOH HOH . N 5 HOH A 15 415 586 HOH HOH . N 5 HOH A 16 416 525 HOH HOH . N 5 HOH A 17 417 523 HOH HOH . N 5 HOH A 18 418 552 HOH HOH . N 5 HOH A 19 419 534 HOH HOH . N 5 HOH A 20 420 594 HOH HOH . N 5 HOH A 21 421 539 HOH HOH . N 5 HOH A 22 422 561 HOH HOH . N 5 HOH A 23 423 547 HOH HOH . N 5 HOH A 24 424 573 HOH HOH . N 5 HOH A 25 425 517 HOH HOH . N 5 HOH A 26 426 571 HOH HOH . N 5 HOH A 27 427 590 HOH HOH . N 5 HOH A 28 428 527 HOH HOH . N 5 HOH A 29 429 599 HOH HOH . N 5 HOH A 30 430 558 HOH HOH . N 5 HOH A 31 431 587 HOH HOH . N 5 HOH A 32 432 521 HOH HOH . N 5 HOH A 33 433 533 HOH HOH . N 5 HOH A 34 434 579 HOH HOH . N 5 HOH A 35 435 602 HOH HOH . N 5 HOH A 36 436 526 HOH HOH . N 5 HOH A 37 437 588 HOH HOH . N 5 HOH A 38 438 570 HOH HOH . N 5 HOH A 39 439 545 HOH HOH . N 5 HOH A 40 440 548 HOH HOH . N 5 HOH A 41 441 513 HOH HOH . N 5 HOH A 42 442 556 HOH HOH . N 5 HOH A 43 443 501 HOH HOH . N 5 HOH A 44 444 512 HOH HOH . N 5 HOH A 45 445 518 HOH HOH . N 5 HOH A 46 446 535 HOH HOH . N 5 HOH A 47 447 541 HOH HOH . N 5 HOH A 48 448 542 HOH HOH . N 5 HOH A 49 449 503 HOH HOH . N 5 HOH A 50 450 553 HOH HOH . N 5 HOH A 51 451 507 HOH HOH . N 5 HOH A 52 452 509 HOH HOH . N 5 HOH A 53 453 565 HOH HOH . N 5 HOH A 54 454 510 HOH HOH . N 5 HOH A 55 455 549 HOH HOH . N 5 HOH A 56 456 506 HOH HOH . N 5 HOH A 57 457 592 HOH HOH . N 5 HOH A 58 458 563 HOH HOH . N 5 HOH A 59 459 529 HOH HOH . N 5 HOH A 60 460 597 HOH HOH . N 5 HOH A 61 461 511 HOH HOH . N 5 HOH A 62 462 593 HOH HOH . N 5 HOH A 63 463 505 HOH HOH . N 5 HOH A 64 464 538 HOH HOH . N 5 HOH A 65 465 566 HOH HOH . N 5 HOH A 66 466 516 HOH HOH . N 5 HOH A 67 467 530 HOH HOH . N 5 HOH A 68 468 508 HOH HOH . N 5 HOH A 69 469 528 HOH HOH . N 5 HOH A 70 470 515 HOH HOH . N 5 HOH A 71 471 596 HOH HOH . N 5 HOH A 72 472 562 HOH HOH . N 5 HOH A 73 473 568 HOH HOH . N 5 HOH A 74 474 502 HOH HOH . N 5 HOH A 75 475 598 HOH HOH . N 5 HOH A 76 476 601 HOH HOH . N 5 HOH A 77 477 519 HOH HOH . N 5 HOH A 78 478 520 HOH HOH . N 5 HOH A 79 479 531 HOH HOH . N 5 HOH A 80 480 589 HOH HOH . N 5 HOH A 81 481 578 HOH HOH . N 5 HOH A 82 482 532 HOH HOH . N 5 HOH A 83 483 574 HOH HOH . N 5 HOH A 84 484 591 HOH HOH . N 5 HOH A 85 485 582 HOH HOH . N 5 HOH A 86 486 559 HOH HOH . N 5 HOH A 87 487 524 HOH HOH . N 5 HOH A 88 488 576 HOH HOH . N 5 HOH A 89 489 564 HOH HOH . N 5 HOH A 90 490 575 HOH HOH . N 5 HOH A 91 491 560 HOH HOH . N 5 HOH A 92 492 577 HOH HOH . N 5 HOH A 93 493 581 HOH HOH . N 5 HOH A 94 494 551 HOH HOH . N 5 HOH A 95 495 550 HOH HOH . N 5 HOH A 96 496 540 HOH HOH . N 5 HOH A 97 497 580 HOH HOH . N 5 HOH A 98 498 569 HOH HOH . N 5 HOH A 99 499 595 HOH HOH . N 5 HOH A 100 500 522 HOH HOH . N 5 HOH A 101 501 603 HOH HOH . N 5 HOH A 102 502 600 HOH HOH . N 5 HOH A 103 503 537 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C35 PGT . . . I 4 -12.245 -21.002 -7.393 1 54.77 ? C35 PGT 308 A 1 HETATM 2 C C34 PGT . . . I 4 -13.163 -21.256 -8.549 1 44.88 ? C34 PGT 308 A 1 HETATM 3 C C33 PGT . . . I 4 -12.568 -21.771 -9.824 1 54.14 ? C33 PGT 308 A 1 HETATM 4 C C32 PGT . . . I 4 -12.116 -20.77 -10.841 1 40.89 ? C32 PGT 308 A 1 HETATM 5 C C31 PGT . . . I 4 -11.764 -21.24 -12.216 1 45.7 ? C31 PGT 308 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #