data_5AZC # _model_server_result.job_id GVsSLb0kNmQ55z0rgp2Mcg _model_server_result.datetime_utc '2024-11-07 05:31:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5azc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5AZC # _exptl.entry_id 5AZC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 751.023 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5AZC _cell.length_a 50.117 _cell.length_b 60.885 _cell.length_c 117.448 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AZC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N # _chem_comp.formula 'C40 H79 O10 P' _chem_comp.formula_weight 751.023 _chem_comp.id PGT _chem_comp.mon_nstd_flag . _chem_comp.name '(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PHOSPHATIDYLGLYCEROL;1-PALMITOYL-2-OLEOYL-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL)](SODIUM SALT)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C47 PGT sing 224 n n C48 H481 PGT sing 225 n n C48 H482 PGT sing 226 n n C48 H483 PGT sing 227 n n C47 C46 PGT sing 228 n n C47 H471 PGT sing 229 n n C47 H472 PGT sing 230 n n C46 C45 PGT sing 231 n n C46 H461 PGT sing 232 n n C46 H462 PGT sing 233 n n C45 C44 PGT sing 234 n n C45 H451 PGT sing 235 n n C45 H452 PGT sing 236 n n C44 C43 PGT sing 237 n n C44 H441 PGT sing 238 n n C44 H442 PGT sing 239 n n C43 C42 PGT sing 240 n n C43 H431 PGT sing 241 n n C43 H432 PGT sing 242 n n C42 C41 PGT sing 243 n n C42 H421 PGT sing 244 n n C42 H422 PGT sing 245 n n C41 C40 PGT sing 246 n n C41 H411 PGT sing 247 n n C41 H412 PGT sing 248 n n C40 C39 PGT sing 249 n n C40 H401 PGT sing 250 n n C40 H402 PGT sing 251 n n C39 C38 PGT sing 252 n n C39 H391 PGT sing 253 n n C39 H392 PGT sing 254 n n C38 C37 PGT sing 255 n n C38 H381 PGT sing 256 n n C38 H382 PGT sing 257 n n C37 C36 PGT sing 258 n n C37 H371 PGT sing 259 n n C37 H372 PGT sing 260 n n C36 C35 PGT sing 261 n n C36 H361 PGT sing 262 n n C36 H362 PGT sing 263 n n C35 C34 PGT sing 264 n n C35 H351 PGT sing 265 n n C35 H352 PGT sing 266 n n C34 C33 PGT sing 267 n n C34 H341 PGT sing 268 n n C34 H342 PGT sing 269 n n C33 C32 PGT sing 270 n n C33 H331 PGT sing 271 n n C33 H332 PGT sing 272 n n C32 C31 PGT sing 273 n n C32 H321 PGT sing 274 n n C32 H322 PGT sing 275 n n C31 O31 PGT doub 276 n n C31 O2 PGT sing 277 n n O2 C2 PGT sing 278 n n C2 C1 PGT sing 279 n n C2 C3 PGT sing 280 n n C2 H2 PGT sing 281 n n C1 O3P PGT sing 282 n n C1 H11 PGT sing 283 n n C1 H12 PGT sing 284 n n O3P P PGT sing 285 n n P O1P PGT doub 286 n n P O2P PGT sing 287 n n P O4P PGT sing 288 n n O2P HO2P PGT sing 289 n n O4P C4 PGT sing 290 n n C4 C5 PGT sing 291 n n C4 H41 PGT sing 292 n n C4 H42 PGT sing 293 n n C5 O5 PGT sing 294 n n C5 C6 PGT sing 295 n n C5 H5 PGT sing 296 n n O5 HO5 PGT sing 297 n n C6 O6 PGT sing 298 n n C6 H61 PGT sing 299 n n C6 H62 PGT sing 300 n n O6 HO6 PGT sing 301 n n C3 O3 PGT sing 302 n n C3 H31 PGT sing 303 n n C3 H32 PGT sing 304 n n O3 C11 PGT sing 305 n n C11 O11 PGT doub 306 n n C11 C12 PGT sing 307 n n C12 C13 PGT sing 308 n n C12 H121 PGT sing 309 n n C12 H122 PGT sing 310 n n C13 C14 PGT sing 311 n n C13 H131 PGT sing 312 n n C13 H132 PGT sing 313 n n C14 C15 PGT sing 314 n n C14 H141 PGT sing 315 n n C14 H142 PGT sing 316 n n C15 C16 PGT sing 317 n n C15 H151 PGT sing 318 n n C15 H152 PGT sing 319 n n C16 C17 PGT sing 320 n n C16 H161 PGT sing 321 n n C16 H162 PGT sing 322 n n C17 C18 PGT sing 323 n n C17 H171 PGT sing 324 n n C17 H172 PGT sing 325 n n C18 C19 PGT sing 326 n n C18 H181 PGT sing 327 n n C18 H182 PGT sing 328 n n C19 C20 PGT sing 329 n n C19 H191 PGT sing 330 n n C19 H192 PGT sing 331 n n C20 C21 PGT sing 332 n n C20 H201 PGT sing 333 n n C20 H202 PGT sing 334 n n C21 C22 PGT sing 335 n n C21 H211 PGT sing 336 n n C21 H212 PGT sing 337 n n C22 C23 PGT sing 338 n n C22 H221 PGT sing 339 n n C22 H222 PGT sing 340 n n C23 C24 PGT sing 341 n n C23 H231 PGT sing 342 n n C23 H232 PGT sing 343 n n C24 C25 PGT sing 344 n n C24 H241 PGT sing 345 n n C24 H242 PGT sing 346 n n C25 C26 PGT sing 347 n n C25 H251 PGT sing 348 n n C25 H252 PGT sing 349 n n C26 H261 PGT sing 350 n n C26 H262 PGT sing 351 n n C26 H263 PGT sing 352 n n # _atom_sites.entry_id 5AZC _atom_sites.fract_transf_matrix[1][1] 0.019953 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016424 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008514 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PGT A 1 301 302 PGT PGT . C 2 PGT A 1 302 304 PGT PGT . D 2 PGT A 1 303 305 PGT PGT . E 2 PGT A 1 304 307 PGT PGT . F 2 PGT A 1 305 308 PGT PGT . G 2 PGT A 1 306 309 PGT PGT . H 2 PGT A 1 307 310 PGT PGT . I 2 PGT A 1 308 311 PGT PGT . J 2 PGT A 1 309 312 PGT PGT . K 2 PGT A 1 310 313 PGT PGT . L 3 HOH A 1 401 594 HOH HOH . L 3 HOH A 2 402 604 HOH HOH . L 3 HOH A 3 403 606 HOH HOH . L 3 HOH A 4 404 613 HOH HOH . L 3 HOH A 5 405 596 HOH HOH . L 3 HOH A 6 406 609 HOH HOH . L 3 HOH A 7 407 617 HOH HOH . L 3 HOH A 8 408 601 HOH HOH . L 3 HOH A 9 409 587 HOH HOH . L 3 HOH A 10 410 515 HOH HOH . L 3 HOH A 11 411 626 HOH HOH . L 3 HOH A 12 412 558 HOH HOH . L 3 HOH A 13 413 603 HOH HOH . L 3 HOH A 14 414 532 HOH HOH . L 3 HOH A 15 415 534 HOH HOH . L 3 HOH A 16 416 544 HOH HOH . L 3 HOH A 17 417 590 HOH HOH . L 3 HOH A 18 418 514 HOH HOH . L 3 HOH A 19 419 523 HOH HOH . L 3 HOH A 20 420 550 HOH HOH . L 3 HOH A 21 421 564 HOH HOH . L 3 HOH A 22 422 504 HOH HOH . L 3 HOH A 23 423 629 HOH HOH . L 3 HOH A 24 424 530 HOH HOH . L 3 HOH A 25 425 548 HOH HOH . L 3 HOH A 26 426 502 HOH HOH . L 3 HOH A 27 427 539 HOH HOH . L 3 HOH A 28 428 536 HOH HOH . L 3 HOH A 29 429 519 HOH HOH . L 3 HOH A 30 430 537 HOH HOH . L 3 HOH A 31 431 503 HOH HOH . L 3 HOH A 32 432 513 HOH HOH . L 3 HOH A 33 433 545 HOH HOH . L 3 HOH A 34 434 553 HOH HOH . L 3 HOH A 35 435 551 HOH HOH . L 3 HOH A 36 436 562 HOH HOH . L 3 HOH A 37 437 526 HOH HOH . L 3 HOH A 38 438 542 HOH HOH . L 3 HOH A 39 439 507 HOH HOH . L 3 HOH A 40 440 511 HOH HOH . L 3 HOH A 41 441 535 HOH HOH . L 3 HOH A 42 442 531 HOH HOH . L 3 HOH A 43 443 500 HOH HOH . L 3 HOH A 44 444 549 HOH HOH . L 3 HOH A 45 445 521 HOH HOH . L 3 HOH A 46 446 572 HOH HOH . L 3 HOH A 47 447 516 HOH HOH . L 3 HOH A 48 448 522 HOH HOH . L 3 HOH A 49 449 529 HOH HOH . L 3 HOH A 50 450 573 HOH HOH . L 3 HOH A 51 451 618 HOH HOH . L 3 HOH A 52 452 501 HOH HOH . L 3 HOH A 53 453 505 HOH HOH . L 3 HOH A 54 454 547 HOH HOH . L 3 HOH A 55 455 565 HOH HOH . L 3 HOH A 56 456 524 HOH HOH . L 3 HOH A 57 457 525 HOH HOH . L 3 HOH A 58 458 509 HOH HOH . L 3 HOH A 59 459 585 HOH HOH . L 3 HOH A 60 460 625 HOH HOH . L 3 HOH A 61 461 510 HOH HOH . L 3 HOH A 62 462 555 HOH HOH . L 3 HOH A 63 463 528 HOH HOH . L 3 HOH A 64 464 533 HOH HOH . L 3 HOH A 65 465 570 HOH HOH . L 3 HOH A 66 466 508 HOH HOH . L 3 HOH A 67 467 520 HOH HOH . L 3 HOH A 68 468 595 HOH HOH . L 3 HOH A 69 469 527 HOH HOH . L 3 HOH A 70 470 556 HOH HOH . L 3 HOH A 71 471 569 HOH HOH . L 3 HOH A 72 472 512 HOH HOH . L 3 HOH A 73 473 566 HOH HOH . L 3 HOH A 74 474 599 HOH HOH . L 3 HOH A 75 475 567 HOH HOH . L 3 HOH A 76 476 506 HOH HOH . L 3 HOH A 77 477 559 HOH HOH . L 3 HOH A 78 478 622 HOH HOH . L 3 HOH A 79 479 615 HOH HOH . L 3 HOH A 80 480 586 HOH HOH . L 3 HOH A 81 481 518 HOH HOH . L 3 HOH A 82 482 517 HOH HOH . L 3 HOH A 83 483 589 HOH HOH . L 3 HOH A 84 484 576 HOH HOH . L 3 HOH A 85 485 628 HOH HOH . L 3 HOH A 86 486 563 HOH HOH . L 3 HOH A 87 487 543 HOH HOH . L 3 HOH A 88 488 600 HOH HOH . L 3 HOH A 89 489 575 HOH HOH . L 3 HOH A 90 490 579 HOH HOH . L 3 HOH A 91 491 577 HOH HOH . L 3 HOH A 92 492 608 HOH HOH . L 3 HOH A 93 493 581 HOH HOH . L 3 HOH A 94 494 561 HOH HOH . L 3 HOH A 95 495 616 HOH HOH . L 3 HOH A 96 496 598 HOH HOH . L 3 HOH A 97 497 610 HOH HOH . L 3 HOH A 98 498 597 HOH HOH . L 3 HOH A 99 499 557 HOH HOH . L 3 HOH A 100 500 584 HOH HOH . L 3 HOH A 101 501 546 HOH HOH . L 3 HOH A 102 502 614 HOH HOH . L 3 HOH A 103 503 580 HOH HOH . L 3 HOH A 104 504 624 HOH HOH . L 3 HOH A 105 505 623 HOH HOH . L 3 HOH A 106 506 541 HOH HOH . L 3 HOH A 107 507 552 HOH HOH . L 3 HOH A 108 508 611 HOH HOH . L 3 HOH A 109 509 560 HOH HOH . L 3 HOH A 110 510 593 HOH HOH . L 3 HOH A 111 511 554 HOH HOH . L 3 HOH A 112 512 588 HOH HOH . L 3 HOH A 113 513 578 HOH HOH . L 3 HOH A 114 514 540 HOH HOH . L 3 HOH A 115 515 627 HOH HOH . L 3 HOH A 116 516 538 HOH HOH . L 3 HOH A 117 517 607 HOH HOH . L 3 HOH A 118 518 612 HOH HOH . L 3 HOH A 119 519 591 HOH HOH . L 3 HOH A 120 520 605 HOH HOH . L 3 HOH A 121 521 621 HOH HOH . L 3 HOH A 122 522 571 HOH HOH . L 3 HOH A 123 523 619 HOH HOH . L 3 HOH A 124 524 582 HOH HOH . L 3 HOH A 125 525 602 HOH HOH . L 3 HOH A 126 526 568 HOH HOH . L 3 HOH A 127 527 592 HOH HOH . L 3 HOH A 128 528 574 HOH HOH . L 3 HOH A 129 529 620 HOH HOH . L 3 HOH A 130 530 583 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C39 PGT . . . B 2 -29.949 -13.988 -6.81 1 61.49 ? C39 PGT 301 A 1 HETATM 2 C C38 PGT . . . B 2 -31.372 -14.401 -6.658 1 57.3 ? C38 PGT 301 A 1 HETATM 3 C C37 PGT . . . B 2 -32.105 -14.812 -7.889 1 46.95 ? C37 PGT 301 A 1 HETATM 4 C C36 PGT . . . B 2 -33.043 -13.817 -8.49 1 44.26 ? C36 PGT 301 A 1 HETATM 5 C C35 PGT . . . B 2 -32.537 -12.959 -9.608 1 43.4 ? C35 PGT 301 A 1 HETATM 6 C C34 PGT . . . B 2 -32.261 -13.593 -10.934 1 43.49 ? C34 PGT 301 A 1 HETATM 7 C C33 PGT . . . B 2 -31.321 -12.897 -11.876 1 47.44 ? C33 PGT 301 A 1 HETATM 8 C C32 PGT . . . B 2 -31.889 -12.232 -13.09 1 42.99 ? C32 PGT 301 A 1 HETATM 9 C C31 PGT . . . B 2 -31.197 -11.029 -13.646 1 47.21 ? C31 PGT 301 A 1 HETATM 10 O O31 PGT . . . B 2 -30.003 -10.897 -13.43 1 56.44 ? O31 PGT 301 A 1 HETATM 11 O O2 PGT . . . B 2 -31.954 -10.001 -14.194 1 57.54 ? O2 PGT 301 A 1 HETATM 12 C C2 PGT . . . B 2 -31.58 -8.661 -14.28 1 55.38 ? C2 PGT 301 A 1 HETATM 13 C C1 PGT . . . B 2 -30.533 -8.465 -15.321 1 56.75 ? C1 PGT 301 A 1 HETATM 14 O O3P PGT . . . B 2 -30.831 -8.842 -16.608 1 59.64 ? O3P PGT 301 A 1 HETATM 15 P P PGT . . . B 2 -30.211 -8.079 -17.816 1 48.22 ? P PGT 301 A 1 HETATM 16 O O1P PGT . . . B 2 -29.133 -8.93 -18.439 1 39.27 ? O1P PGT 301 A 1 HETATM 17 O O2P PGT . . . B 2 -29.633 -6.748 -17.389 1 43.98 ? O2P PGT 301 A 1 HETATM 18 O O4P PGT . . . B 2 -31.416 -7.838 -18.778 1 60.83 ? O4P PGT 301 A 1 HETATM 19 C C4 PGT . . . B 2 -31.308 -7.968 -20.14 1 55.64 ? C4 PGT 301 A 1 HETATM 20 C C5 PGT . . . B 2 -31.16 -6.691 -20.897 1 66.71 ? C5 PGT 301 A 1 HETATM 21 O O5 PGT . . . B 2 -32.203 -6.552 -21.793 1 67.21 ? O5 PGT 301 A 1 HETATM 22 C C6 PGT . . . B 2 -29.838 -6.683 -21.594 1 62.84 ? C6 PGT 301 A 1 HETATM 23 O O6 PGT . . . B 2 -28.915 -7.656 -21.238 1 54.56 ? O6 PGT 301 A 1 HETATM 24 C C3 PGT . . . B 2 -31.172 -7.982 -13.002 1 50.23 ? C3 PGT 301 A 1 HETATM 25 O O3 PGT . . . B 2 -31.206 -8.66 -11.797 1 63.35 ? O3 PGT 301 A 1 HETATM 26 C C11 PGT . . . B 2 -30.334 -8.325 -10.776 1 49.76 ? C11 PGT 301 A 1 HETATM 27 O O11 PGT . . . B 2 -29.569 -7.387 -10.917 1 54.05 ? O11 PGT 301 A 1 HETATM 28 C C12 PGT . . . B 2 -30.233 -9.19 -9.552 1 58.43 ? C12 PGT 301 A 1 HETATM 29 C C13 PGT . . . B 2 -29.103 -8.979 -8.591 1 47.02 ? C13 PGT 301 A 1 HETATM 30 C C14 PGT . . . B 2 -28.102 -10.086 -8.4 1 44.92 ? C14 PGT 301 A 1 HETATM 31 C C15 PGT . . . B 2 -27.41 -11.224 -9.098 1 54.41 ? C15 PGT 301 A 1 HETATM 32 C C16 PGT . . . B 2 -26.977 -12.402 -8.286 1 48.39 ? C16 PGT 301 A 1 HETATM 33 C C17 PGT . . . B 2 -25.831 -12.189 -7.352 1 56.1 ? C17 PGT 301 A 1 # _model_server_stats.io_time_ms 100 _model_server_stats.parse_time_ms 126 _model_server_stats.create_model_time_ms 136 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 33 #