data_5AZC
#
_model_server_result.job_id            5Na4uScoG1r3iPtz2c-bwQ 
_model_server_result.datetime_utc      '2024-11-07 05:47:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5azc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    5AZC 
#
_exptl.entry_id    5AZC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              751.023 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5AZC 
_cell.length_a            50.117 
_cell.length_b            60.885 
_cell.length_c            117.448 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5AZC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
#
_chem_comp.formula           'C40 H79 O10 P' 
_chem_comp.formula_weight    751.023 
_chem_comp.id                PGT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'PHOSPHATIDYLGLYCEROL;1-PALMITOYL-2-OLEOYL-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL)](SODIUM SALT)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C48 C47 PGT sing 224 n n 
C48 H481 PGT sing 225 n n 
C48 H482 PGT sing 226 n n 
C48 H483 PGT sing 227 n n 
C47 C46 PGT sing 228 n n 
C47 H471 PGT sing 229 n n 
C47 H472 PGT sing 230 n n 
C46 C45 PGT sing 231 n n 
C46 H461 PGT sing 232 n n 
C46 H462 PGT sing 233 n n 
C45 C44 PGT sing 234 n n 
C45 H451 PGT sing 235 n n 
C45 H452 PGT sing 236 n n 
C44 C43 PGT sing 237 n n 
C44 H441 PGT sing 238 n n 
C44 H442 PGT sing 239 n n 
C43 C42 PGT sing 240 n n 
C43 H431 PGT sing 241 n n 
C43 H432 PGT sing 242 n n 
C42 C41 PGT sing 243 n n 
C42 H421 PGT sing 244 n n 
C42 H422 PGT sing 245 n n 
C41 C40 PGT sing 246 n n 
C41 H411 PGT sing 247 n n 
C41 H412 PGT sing 248 n n 
C40 C39 PGT sing 249 n n 
C40 H401 PGT sing 250 n n 
C40 H402 PGT sing 251 n n 
C39 C38 PGT sing 252 n n 
C39 H391 PGT sing 253 n n 
C39 H392 PGT sing 254 n n 
C38 C37 PGT sing 255 n n 
C38 H381 PGT sing 256 n n 
C38 H382 PGT sing 257 n n 
C37 C36 PGT sing 258 n n 
C37 H371 PGT sing 259 n n 
C37 H372 PGT sing 260 n n 
C36 C35 PGT sing 261 n n 
C36 H361 PGT sing 262 n n 
C36 H362 PGT sing 263 n n 
C35 C34 PGT sing 264 n n 
C35 H351 PGT sing 265 n n 
C35 H352 PGT sing 266 n n 
C34 C33 PGT sing 267 n n 
C34 H341 PGT sing 268 n n 
C34 H342 PGT sing 269 n n 
C33 C32 PGT sing 270 n n 
C33 H331 PGT sing 271 n n 
C33 H332 PGT sing 272 n n 
C32 C31 PGT sing 273 n n 
C32 H321 PGT sing 274 n n 
C32 H322 PGT sing 275 n n 
C31 O31 PGT doub 276 n n 
C31 O2 PGT sing 277 n n 
O2 C2 PGT sing 278 n n 
C2 C1 PGT sing 279 n n 
C2 C3 PGT sing 280 n n 
C2 H2 PGT sing 281 n n 
C1 O3P PGT sing 282 n n 
C1 H11 PGT sing 283 n n 
C1 H12 PGT sing 284 n n 
O3P P PGT sing 285 n n 
P O1P PGT doub 286 n n 
P O2P PGT sing 287 n n 
P O4P PGT sing 288 n n 
O2P HO2P PGT sing 289 n n 
O4P C4 PGT sing 290 n n 
C4 C5 PGT sing 291 n n 
C4 H41 PGT sing 292 n n 
C4 H42 PGT sing 293 n n 
C5 O5 PGT sing 294 n n 
C5 C6 PGT sing 295 n n 
C5 H5 PGT sing 296 n n 
O5 HO5 PGT sing 297 n n 
C6 O6 PGT sing 298 n n 
C6 H61 PGT sing 299 n n 
C6 H62 PGT sing 300 n n 
O6 HO6 PGT sing 301 n n 
C3 O3 PGT sing 302 n n 
C3 H31 PGT sing 303 n n 
C3 H32 PGT sing 304 n n 
O3 C11 PGT sing 305 n n 
C11 O11 PGT doub 306 n n 
C11 C12 PGT sing 307 n n 
C12 C13 PGT sing 308 n n 
C12 H121 PGT sing 309 n n 
C12 H122 PGT sing 310 n n 
C13 C14 PGT sing 311 n n 
C13 H131 PGT sing 312 n n 
C13 H132 PGT sing 313 n n 
C14 C15 PGT sing 314 n n 
C14 H141 PGT sing 315 n n 
C14 H142 PGT sing 316 n n 
C15 C16 PGT sing 317 n n 
C15 H151 PGT sing 318 n n 
C15 H152 PGT sing 319 n n 
C16 C17 PGT sing 320 n n 
C16 H161 PGT sing 321 n n 
C16 H162 PGT sing 322 n n 
C17 C18 PGT sing 323 n n 
C17 H171 PGT sing 324 n n 
C17 H172 PGT sing 325 n n 
C18 C19 PGT sing 326 n n 
C18 H181 PGT sing 327 n n 
C18 H182 PGT sing 328 n n 
C19 C20 PGT sing 329 n n 
C19 H191 PGT sing 330 n n 
C19 H192 PGT sing 331 n n 
C20 C21 PGT sing 332 n n 
C20 H201 PGT sing 333 n n 
C20 H202 PGT sing 334 n n 
C21 C22 PGT sing 335 n n 
C21 H211 PGT sing 336 n n 
C21 H212 PGT sing 337 n n 
C22 C23 PGT sing 338 n n 
C22 H221 PGT sing 339 n n 
C22 H222 PGT sing 340 n n 
C23 C24 PGT sing 341 n n 
C23 H231 PGT sing 342 n n 
C23 H232 PGT sing 343 n n 
C24 C25 PGT sing 344 n n 
C24 H241 PGT sing 345 n n 
C24 H242 PGT sing 346 n n 
C25 C26 PGT sing 347 n n 
C25 H251 PGT sing 348 n n 
C25 H252 PGT sing 349 n n 
C26 H261 PGT sing 350 n n 
C26 H262 PGT sing 351 n n 
C26 H263 PGT sing 352 n n 
#
_atom_sites.entry_id                     5AZC 
_atom_sites.fract_transf_matrix[1][1]    0.019953 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016424 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008514 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PGT A 1 301 302 PGT PGT . 
C 2 PGT A 1 302 304 PGT PGT . 
D 2 PGT A 1 303 305 PGT PGT . 
E 2 PGT A 1 304 307 PGT PGT . 
F 2 PGT A 1 305 308 PGT PGT . 
G 2 PGT A 1 306 309 PGT PGT . 
H 2 PGT A 1 307 310 PGT PGT . 
I 2 PGT A 1 308 311 PGT PGT . 
J 2 PGT A 1 309 312 PGT PGT . 
K 2 PGT A 1 310 313 PGT PGT . 
L 3 HOH A 1 401 594 HOH HOH . 
L 3 HOH A 2 402 604 HOH HOH . 
L 3 HOH A 3 403 606 HOH HOH . 
L 3 HOH A 4 404 613 HOH HOH . 
L 3 HOH A 5 405 596 HOH HOH . 
L 3 HOH A 6 406 609 HOH HOH . 
L 3 HOH A 7 407 617 HOH HOH . 
L 3 HOH A 8 408 601 HOH HOH . 
L 3 HOH A 9 409 587 HOH HOH . 
L 3 HOH A 10 410 515 HOH HOH . 
L 3 HOH A 11 411 626 HOH HOH . 
L 3 HOH A 12 412 558 HOH HOH . 
L 3 HOH A 13 413 603 HOH HOH . 
L 3 HOH A 14 414 532 HOH HOH . 
L 3 HOH A 15 415 534 HOH HOH . 
L 3 HOH A 16 416 544 HOH HOH . 
L 3 HOH A 17 417 590 HOH HOH . 
L 3 HOH A 18 418 514 HOH HOH . 
L 3 HOH A 19 419 523 HOH HOH . 
L 3 HOH A 20 420 550 HOH HOH . 
L 3 HOH A 21 421 564 HOH HOH . 
L 3 HOH A 22 422 504 HOH HOH . 
L 3 HOH A 23 423 629 HOH HOH . 
L 3 HOH A 24 424 530 HOH HOH . 
L 3 HOH A 25 425 548 HOH HOH . 
L 3 HOH A 26 426 502 HOH HOH . 
L 3 HOH A 27 427 539 HOH HOH . 
L 3 HOH A 28 428 536 HOH HOH . 
L 3 HOH A 29 429 519 HOH HOH . 
L 3 HOH A 30 430 537 HOH HOH . 
L 3 HOH A 31 431 503 HOH HOH . 
L 3 HOH A 32 432 513 HOH HOH . 
L 3 HOH A 33 433 545 HOH HOH . 
L 3 HOH A 34 434 553 HOH HOH . 
L 3 HOH A 35 435 551 HOH HOH . 
L 3 HOH A 36 436 562 HOH HOH . 
L 3 HOH A 37 437 526 HOH HOH . 
L 3 HOH A 38 438 542 HOH HOH . 
L 3 HOH A 39 439 507 HOH HOH . 
L 3 HOH A 40 440 511 HOH HOH . 
L 3 HOH A 41 441 535 HOH HOH . 
L 3 HOH A 42 442 531 HOH HOH . 
L 3 HOH A 43 443 500 HOH HOH . 
L 3 HOH A 44 444 549 HOH HOH . 
L 3 HOH A 45 445 521 HOH HOH . 
L 3 HOH A 46 446 572 HOH HOH . 
L 3 HOH A 47 447 516 HOH HOH . 
L 3 HOH A 48 448 522 HOH HOH . 
L 3 HOH A 49 449 529 HOH HOH . 
L 3 HOH A 50 450 573 HOH HOH . 
L 3 HOH A 51 451 618 HOH HOH . 
L 3 HOH A 52 452 501 HOH HOH . 
L 3 HOH A 53 453 505 HOH HOH . 
L 3 HOH A 54 454 547 HOH HOH . 
L 3 HOH A 55 455 565 HOH HOH . 
L 3 HOH A 56 456 524 HOH HOH . 
L 3 HOH A 57 457 525 HOH HOH . 
L 3 HOH A 58 458 509 HOH HOH . 
L 3 HOH A 59 459 585 HOH HOH . 
L 3 HOH A 60 460 625 HOH HOH . 
L 3 HOH A 61 461 510 HOH HOH . 
L 3 HOH A 62 462 555 HOH HOH . 
L 3 HOH A 63 463 528 HOH HOH . 
L 3 HOH A 64 464 533 HOH HOH . 
L 3 HOH A 65 465 570 HOH HOH . 
L 3 HOH A 66 466 508 HOH HOH . 
L 3 HOH A 67 467 520 HOH HOH . 
L 3 HOH A 68 468 595 HOH HOH . 
L 3 HOH A 69 469 527 HOH HOH . 
L 3 HOH A 70 470 556 HOH HOH . 
L 3 HOH A 71 471 569 HOH HOH . 
L 3 HOH A 72 472 512 HOH HOH . 
L 3 HOH A 73 473 566 HOH HOH . 
L 3 HOH A 74 474 599 HOH HOH . 
L 3 HOH A 75 475 567 HOH HOH . 
L 3 HOH A 76 476 506 HOH HOH . 
L 3 HOH A 77 477 559 HOH HOH . 
L 3 HOH A 78 478 622 HOH HOH . 
L 3 HOH A 79 479 615 HOH HOH . 
L 3 HOH A 80 480 586 HOH HOH . 
L 3 HOH A 81 481 518 HOH HOH . 
L 3 HOH A 82 482 517 HOH HOH . 
L 3 HOH A 83 483 589 HOH HOH . 
L 3 HOH A 84 484 576 HOH HOH . 
L 3 HOH A 85 485 628 HOH HOH . 
L 3 HOH A 86 486 563 HOH HOH . 
L 3 HOH A 87 487 543 HOH HOH . 
L 3 HOH A 88 488 600 HOH HOH . 
L 3 HOH A 89 489 575 HOH HOH . 
L 3 HOH A 90 490 579 HOH HOH . 
L 3 HOH A 91 491 577 HOH HOH . 
L 3 HOH A 92 492 608 HOH HOH . 
L 3 HOH A 93 493 581 HOH HOH . 
L 3 HOH A 94 494 561 HOH HOH . 
L 3 HOH A 95 495 616 HOH HOH . 
L 3 HOH A 96 496 598 HOH HOH . 
L 3 HOH A 97 497 610 HOH HOH . 
L 3 HOH A 98 498 597 HOH HOH . 
L 3 HOH A 99 499 557 HOH HOH . 
L 3 HOH A 100 500 584 HOH HOH . 
L 3 HOH A 101 501 546 HOH HOH . 
L 3 HOH A 102 502 614 HOH HOH . 
L 3 HOH A 103 503 580 HOH HOH . 
L 3 HOH A 104 504 624 HOH HOH . 
L 3 HOH A 105 505 623 HOH HOH . 
L 3 HOH A 106 506 541 HOH HOH . 
L 3 HOH A 107 507 552 HOH HOH . 
L 3 HOH A 108 508 611 HOH HOH . 
L 3 HOH A 109 509 560 HOH HOH . 
L 3 HOH A 110 510 593 HOH HOH . 
L 3 HOH A 111 511 554 HOH HOH . 
L 3 HOH A 112 512 588 HOH HOH . 
L 3 HOH A 113 513 578 HOH HOH . 
L 3 HOH A 114 514 540 HOH HOH . 
L 3 HOH A 115 515 627 HOH HOH . 
L 3 HOH A 116 516 538 HOH HOH . 
L 3 HOH A 117 517 607 HOH HOH . 
L 3 HOH A 118 518 612 HOH HOH . 
L 3 HOH A 119 519 591 HOH HOH . 
L 3 HOH A 120 520 605 HOH HOH . 
L 3 HOH A 121 521 621 HOH HOH . 
L 3 HOH A 122 522 571 HOH HOH . 
L 3 HOH A 123 523 619 HOH HOH . 
L 3 HOH A 124 524 582 HOH HOH . 
L 3 HOH A 125 525 602 HOH HOH . 
L 3 HOH A 126 526 568 HOH HOH . 
L 3 HOH A 127 527 592 HOH HOH . 
L 3 HOH A 128 528 574 HOH HOH . 
L 3 HOH A 129 529 620 HOH HOH . 
L 3 HOH A 130 530 583 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C48 PGT . . . D 2 -15.212 -22.925 2.849 1 35.74 ? C48 PGT 303 A 1 
HETATM 2 C C47 PGT . . . D 2 -15.517 -23.786 1.668 1 45.84 ? C47 PGT 303 A 1 
HETATM 3 C C46 PGT . . . D 2 -16.112 -23.113 0.476 1 47.66 ? C46 PGT 303 A 1 
HETATM 4 C C45 PGT . . . D 2 -16.234 -23.868 -0.812 1 54.12 ? C45 PGT 303 A 1 
HETATM 5 C C44 PGT . . . D 2 -15.79 -23.197 -2.08 1 49.76 ? C44 PGT 303 A 1 
HETATM 6 C C43 PGT . . . D 2 -16.341 -23.701 -3.378 1 48.29 ? C43 PGT 303 A 1 
HETATM 7 C C42 PGT . . . D 2 -15.598 -23.431 -4.646 1 51.26 ? C42 PGT 303 A 1 
HETATM 8 C C41 PGT . . . D 2 -16.267 -23.829 -5.924 1 54.75 ? C41 PGT 303 A 1 
HETATM 9 C C40 PGT . . . D 2 -15.49 -23.798 -7.204 1 53.78 ? C40 PGT 303 A 1 
HETATM 10 C C39 PGT . . . D 2 -16.238 -23.621 -8.492 1 51.7 ? C39 PGT 303 A 1 
HETATM 11 C C38 PGT . . . D 2 -15.461 -23.571 -9.768 1 42.87 ? C38 PGT 303 A 1 
HETATM 12 C C37 PGT . . . D 2 -16.19 -23.788 -11.057 1 47.55 ? C37 PGT 303 A 1 
HETATM 13 C C36 PGT . . . D 2 -15.743 -23.013 -12.258 1 47.03 ? C36 PGT 303 A 1 
HETATM 14 C C35 PGT . . . D 2 -16.159 -23.477 -13.622 1 43.93 ? C35 PGT 303 A 1 
HETATM 15 C C34 PGT . . . D 2 -15.546 -22.819 -14.824 1 51.76 ? C34 PGT 303 A 1 
HETATM 16 C C33 PGT . . . D 2 -14.592 -23.613 -15.662 1 52.43 ? C33 PGT 303 A 1 
HETATM 17 C C32 PGT . . . D 2 -14.179 -23.055 -16.987 1 46.18 ? C32 PGT 303 A 1 
HETATM 18 C C31 PGT . . . D 2 -12.727 -22.992 -17.346 1 52.05 ? C31 PGT 303 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           18 
#