data_5AZI
#
_model_server_result.job_id            xxictHZ8ltId0xG4Uhhi2w 
_model_server_result.datetime_utc      '2025-03-05 20:17:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5azi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":602}' 
#
_entry.id    5AZI 
#
_exptl.entry_id    5AZI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          89.96 
_cell.angle_gamma         90 
_cell.entry_id            5AZI 
_cell.length_a            63.669 
_cell.length_b            120.253 
_cell.length_c            154.593 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5AZI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,K,L 1 1 
C,D,H,I,J,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 I N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C GLY 281 B GLY 275 1_555 B N TPO 282 B TPO 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 B C TPO 282 B TPO 276 1_555 B N GLY 283 B GLY 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale3 D C GLY 281 D GLY 275 1_555 D N TPO 282 D TPO 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale4 D C TPO 282 D TPO 276 1_555 D N GLY 283 D GLY 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 149 n n 
C1 C2 GOL sing 150 n n 
C1 H11 GOL sing 151 n n 
C1 H12 GOL sing 152 n n 
O1 HO1 GOL sing 153 n n 
C2 O2 GOL sing 154 n n 
C2 C3 GOL sing 155 n n 
C2 H2 GOL sing 156 n n 
O2 HO2 GOL sing 157 n n 
C3 O3 GOL sing 158 n n 
C3 H31 GOL sing 159 n n 
C3 H32 GOL sing 160 n n 
O3 HO3 GOL sing 161 n n 
#
_atom_sites.entry_id                     5AZI 
_atom_sites.fract_transf_matrix[1][1]    0.015706 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    -0.00001 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008316 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006469 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 4NP A 1 601 601 4NP 4NP . 
F 4 GOL A 1 602 602 GOL GOL . 
G 4 GOL B 1 601 602 GOL GOL . 
H 3 4NP C 1 601 601 4NP 4NP . 
I 4 GOL C 1 602 602 GOL GOL . 
J 4 GOL D 1 601 602 GOL GOL . 
K 5 HOH A 1 701 51 HOH HOH . 
K 5 HOH A 2 702 108 HOH HOH . 
K 5 HOH A 3 703 97 HOH HOH . 
K 5 HOH A 4 704 39 HOH HOH . 
K 5 HOH A 5 705 145 HOH HOH . 
K 5 HOH A 6 706 106 HOH HOH . 
K 5 HOH A 7 707 42 HOH HOH . 
K 5 HOH A 8 708 98 HOH HOH . 
K 5 HOH A 9 709 15 HOH HOH . 
K 5 HOH A 10 710 95 HOH HOH . 
K 5 HOH A 11 711 17 HOH HOH . 
K 5 HOH A 12 712 33 HOH HOH . 
K 5 HOH A 13 713 102 HOH HOH . 
K 5 HOH A 14 714 77 HOH HOH . 
K 5 HOH A 15 715 36 HOH HOH . 
K 5 HOH A 16 716 93 HOH HOH . 
K 5 HOH A 17 717 44 HOH HOH . 
K 5 HOH A 18 718 18 HOH HOH . 
K 5 HOH A 19 719 32 HOH HOH . 
K 5 HOH A 20 720 5 HOH HOH . 
K 5 HOH A 21 721 120 HOH HOH . 
K 5 HOH A 22 722 122 HOH HOH . 
K 5 HOH A 23 723 4 HOH HOH . 
K 5 HOH A 24 724 72 HOH HOH . 
K 5 HOH A 25 725 96 HOH HOH . 
K 5 HOH A 26 726 62 HOH HOH . 
K 5 HOH A 27 727 23 HOH HOH . 
K 5 HOH A 28 728 84 HOH HOH . 
K 5 HOH A 29 729 118 HOH HOH . 
K 5 HOH A 30 730 88 HOH HOH . 
K 5 HOH A 31 731 52 HOH HOH . 
K 5 HOH A 32 732 78 HOH HOH . 
K 5 HOH A 33 733 80 HOH HOH . 
K 5 HOH A 34 734 43 HOH HOH . 
K 5 HOH A 35 735 59 HOH HOH . 
K 5 HOH A 36 736 142 HOH HOH . 
K 5 HOH A 37 737 81 HOH HOH . 
K 5 HOH A 38 738 53 HOH HOH . 
K 5 HOH A 39 739 119 HOH HOH . 
K 5 HOH A 40 740 83 HOH HOH . 
K 5 HOH A 41 741 94 HOH HOH . 
K 5 HOH A 42 742 19 HOH HOH . 
K 5 HOH A 43 743 92 HOH HOH . 
K 5 HOH A 44 744 126 HOH HOH . 
K 5 HOH A 45 745 121 HOH HOH . 
K 5 HOH A 46 746 20 HOH HOH . 
K 5 HOH A 47 747 25 HOH HOH . 
L 5 HOH B 1 701 34 HOH HOH . 
L 5 HOH B 2 702 6 HOH HOH . 
L 5 HOH B 3 703 109 HOH HOH . 
L 5 HOH B 4 704 37 HOH HOH . 
L 5 HOH B 5 705 24 HOH HOH . 
L 5 HOH B 6 706 8 HOH HOH . 
L 5 HOH B 7 707 90 HOH HOH . 
L 5 HOH B 8 708 29 HOH HOH . 
L 5 HOH B 9 709 114 HOH HOH . 
L 5 HOH B 10 710 21 HOH HOH . 
L 5 HOH B 11 711 9 HOH HOH . 
L 5 HOH B 12 712 133 HOH HOH . 
L 5 HOH B 13 713 99 HOH HOH . 
L 5 HOH B 14 714 125 HOH HOH . 
L 5 HOH B 15 715 115 HOH HOH . 
L 5 HOH B 16 716 45 HOH HOH . 
L 5 HOH B 17 717 132 HOH HOH . 
L 5 HOH B 18 718 58 HOH HOH . 
L 5 HOH B 19 719 61 HOH HOH . 
L 5 HOH B 20 720 75 HOH HOH . 
L 5 HOH B 21 721 87 HOH HOH . 
L 5 HOH B 22 722 63 HOH HOH . 
L 5 HOH B 23 723 22 HOH HOH . 
L 5 HOH B 24 724 46 HOH HOH . 
M 5 HOH C 1 701 111 HOH HOH . 
M 5 HOH C 2 702 31 HOH HOH . 
M 5 HOH C 3 703 117 HOH HOH . 
M 5 HOH C 4 704 100 HOH HOH . 
M 5 HOH C 5 705 112 HOH HOH . 
M 5 HOH C 6 706 110 HOH HOH . 
M 5 HOH C 7 707 35 HOH HOH . 
M 5 HOH C 8 708 123 HOH HOH . 
M 5 HOH C 9 709 71 HOH HOH . 
M 5 HOH C 10 710 113 HOH HOH . 
M 5 HOH C 11 711 16 HOH HOH . 
M 5 HOH C 12 712 64 HOH HOH . 
M 5 HOH C 13 713 86 HOH HOH . 
M 5 HOH C 14 714 12 HOH HOH . 
M 5 HOH C 15 715 147 HOH HOH . 
M 5 HOH C 16 716 101 HOH HOH . 
M 5 HOH C 17 717 28 HOH HOH . 
M 5 HOH C 18 718 3 HOH HOH . 
M 5 HOH C 19 719 38 HOH HOH . 
M 5 HOH C 20 720 107 HOH HOH . 
M 5 HOH C 21 721 7 HOH HOH . 
M 5 HOH C 22 722 134 HOH HOH . 
M 5 HOH C 23 723 85 HOH HOH . 
M 5 HOH C 24 724 79 HOH HOH . 
M 5 HOH C 25 725 130 HOH HOH . 
M 5 HOH C 26 726 65 HOH HOH . 
M 5 HOH C 27 727 70 HOH HOH . 
M 5 HOH C 28 728 150 HOH HOH . 
M 5 HOH C 29 729 148 HOH HOH . 
M 5 HOH C 30 730 55 HOH HOH . 
M 5 HOH C 31 731 27 HOH HOH . 
M 5 HOH C 32 732 103 HOH HOH . 
M 5 HOH C 33 733 66 HOH HOH . 
M 5 HOH C 34 734 69 HOH HOH . 
M 5 HOH C 35 735 54 HOH HOH . 
M 5 HOH C 36 736 135 HOH HOH . 
M 5 HOH C 37 737 41 HOH HOH . 
M 5 HOH C 38 738 139 HOH HOH . 
M 5 HOH C 39 739 146 HOH HOH . 
M 5 HOH C 40 740 76 HOH HOH . 
M 5 HOH C 41 741 82 HOH HOH . 
M 5 HOH C 42 742 131 HOH HOH . 
M 5 HOH C 43 743 140 HOH HOH . 
M 5 HOH C 44 744 138 HOH HOH . 
M 5 HOH C 45 745 136 HOH HOH . 
M 5 HOH C 46 746 13 HOH HOH . 
M 5 HOH C 47 747 91 HOH HOH . 
M 5 HOH C 48 748 105 HOH HOH . 
M 5 HOH C 49 749 141 HOH HOH . 
N 5 HOH D 1 701 14 HOH HOH . 
N 5 HOH D 2 702 30 HOH HOH . 
N 5 HOH D 3 703 2 HOH HOH . 
N 5 HOH D 4 704 1 HOH HOH . 
N 5 HOH D 5 705 49 HOH HOH . 
N 5 HOH D 6 706 10 HOH HOH . 
N 5 HOH D 7 707 11 HOH HOH . 
N 5 HOH D 8 708 68 HOH HOH . 
N 5 HOH D 9 709 26 HOH HOH . 
N 5 HOH D 10 710 116 HOH HOH . 
N 5 HOH D 11 711 40 HOH HOH . 
N 5 HOH D 12 712 144 HOH HOH . 
N 5 HOH D 13 713 48 HOH HOH . 
N 5 HOH D 14 714 47 HOH HOH . 
N 5 HOH D 15 715 74 HOH HOH . 
N 5 HOH D 16 716 127 HOH HOH . 
N 5 HOH D 17 717 104 HOH HOH . 
N 5 HOH D 18 718 128 HOH HOH . 
N 5 HOH D 19 719 56 HOH HOH . 
N 5 HOH D 20 720 124 HOH HOH . 
N 5 HOH D 21 721 67 HOH HOH . 
N 5 HOH D 22 722 60 HOH HOH . 
N 5 HOH D 23 723 137 HOH HOH . 
N 5 HOH D 24 724 143 HOH HOH . 
N 5 HOH D 25 725 73 HOH HOH . 
N 5 HOH D 26 726 129 HOH HOH . 
N 5 HOH D 27 727 89 HOH HOH . 
N 5 HOH D 28 728 57 HOH HOH . 
N 5 HOH D 29 729 149 HOH HOH . 
N 5 HOH D 30 730 50 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 4 34.207 -0.031 52.695 1 42.82 ? C1 GOL 602 A 1 
HETATM 2 O O1 GOL . . . F 4 33.348 0.333 51.601 1 41.76 ? O1 GOL 602 A 1 
HETATM 3 C C2 GOL . . . F 4 33.457 -0.019 54.028 1 43.33 ? C2 GOL 602 A 1 
HETATM 4 O O2 GOL . . . F 4 32.714 -1.23 54.135 1 40.45 ? O2 GOL 602 A 1 
HETATM 5 C C3 GOL . . . F 4 34.428 0.109 55.208 1 45.49 ? C3 GOL 602 A 1 
HETATM 6 O O3 GOL . . . F 4 33.841 0.822 56.325 1 48.79 ? O3 GOL 602 A 1 
#
_model_server_stats.io_time_ms              34 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#