data_5AZJ
#
_model_server_result.job_id            1PWNRbD9hl0e0-QBErJsMg 
_model_server_result.datetime_utc      '2024-11-17 07:51:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5azj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":601}' 
#
_entry.id    5AZJ 
#
_exptl.entry_id    5AZJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              219.089 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-NITROPHENYL PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.02 
_cell.angle_gamma         90 
_cell.entry_id            5AZJ 
_cell.length_a            63.737 
_cell.length_b            120.031 
_cell.length_c            154.706 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5AZJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,K,L 1 1 
C,D,H,I,J,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 284 B CYS 278 1_555 B SG CYS 325 B CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf2 D SG CYS 284 D CYS 278 1_555 D SG CYS 325 D CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
covale ? covale1 B C GLY 281 B GLY 275 1_555 B N TPO 282 B TPO 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale2 B C TPO 282 B TPO 276 1_555 B N GLY 283 B GLY 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 D C GLY 281 D GLY 275 1_555 D N TPO 282 D TPO 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale4 D C TPO 282 D TPO 276 1_555 D N GLY 283 D GLY 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
#
_chem_comp.formula           'C6 H6 N O6 P' 
_chem_comp.formula_weight    219.089 
_chem_comp.id                4NP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-NITROPHENYL PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 4NP sing 1 n n 
P O2 4NP doub 2 n n 
P O3 4NP sing 3 n n 
P O4 4NP sing 4 n n 
O1 C1 4NP sing 5 n n 
O3 HO3 4NP sing 6 n n 
O4 HO4 4NP sing 7 n n 
C1 C2 4NP doub 8 n y 
C1 C6 4NP sing 9 n y 
C2 C3 4NP sing 10 n y 
C2 H21 4NP sing 11 n n 
C3 C4 4NP doub 12 n y 
C3 H31 4NP sing 13 n n 
C4 C5 4NP sing 14 n y 
C4 N 4NP sing 15 n n 
C5 C6 4NP doub 16 n y 
C5 H51 4NP sing 17 n n 
C6 H61 4NP sing 18 n n 
N O5 4NP sing 19 n n 
N O6 4NP doub 20 n n 
#
_atom_sites.entry_id                     5AZJ 
_atom_sites.fract_transf_matrix[1][1]    0.015689 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000006 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008331 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006464 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 4NP A 1 601 601 4NP 4NP . 
F 4 GOL A 1 602 602 GOL GOL . 
G 4 GOL B 1 601 602 GOL GOL . 
H 3 4NP C 1 601 601 4NP 4NP . 
I 4 GOL C 1 602 602 GOL GOL . 
J 4 GOL D 1 601 602 GOL GOL . 
K 5 HOH A 1 701 23 HOH HOH . 
K 5 HOH A 2 702 76 HOH HOH . 
K 5 HOH A 3 703 101 HOH HOH . 
K 5 HOH A 4 704 67 HOH HOH . 
K 5 HOH A 5 705 56 HOH HOH . 
K 5 HOH A 6 706 14 HOH HOH . 
K 5 HOH A 7 707 25 HOH HOH . 
K 5 HOH A 8 708 13 HOH HOH . 
K 5 HOH A 9 709 20 HOH HOH . 
K 5 HOH A 10 710 64 HOH HOH . 
K 5 HOH A 11 711 30 HOH HOH . 
K 5 HOH A 12 712 29 HOH HOH . 
K 5 HOH A 13 713 35 HOH HOH . 
K 5 HOH A 14 714 69 HOH HOH . 
K 5 HOH A 15 715 26 HOH HOH . 
K 5 HOH A 16 716 12 HOH HOH . 
K 5 HOH A 17 717 55 HOH HOH . 
K 5 HOH A 18 718 75 HOH HOH . 
K 5 HOH A 19 719 54 HOH HOH . 
K 5 HOH A 20 720 53 HOH HOH . 
K 5 HOH A 21 721 38 HOH HOH . 
K 5 HOH A 22 722 59 HOH HOH . 
K 5 HOH A 23 723 39 HOH HOH . 
K 5 HOH A 24 724 57 HOH HOH . 
K 5 HOH A 25 725 65 HOH HOH . 
K 5 HOH A 26 726 58 HOH HOH . 
L 5 HOH B 1 701 70 HOH HOH . 
L 5 HOH B 2 702 77 HOH HOH . 
L 5 HOH B 3 703 43 HOH HOH . 
L 5 HOH B 4 704 2 HOH HOH . 
L 5 HOH B 5 705 5 HOH HOH . 
L 5 HOH B 6 706 8 HOH HOH . 
L 5 HOH B 7 707 11 HOH HOH . 
L 5 HOH B 8 708 100 HOH HOH . 
L 5 HOH B 9 709 63 HOH HOH . 
L 5 HOH B 10 710 95 HOH HOH . 
L 5 HOH B 11 711 83 HOH HOH . 
L 5 HOH B 12 712 28 HOH HOH . 
L 5 HOH B 13 713 96 HOH HOH . 
L 5 HOH B 14 714 17 HOH HOH . 
L 5 HOH B 15 715 16 HOH HOH . 
L 5 HOH B 16 716 74 HOH HOH . 
L 5 HOH B 17 717 62 HOH HOH . 
L 5 HOH B 18 718 86 HOH HOH . 
L 5 HOH B 19 719 98 HOH HOH . 
L 5 HOH B 20 720 87 HOH HOH . 
L 5 HOH B 21 721 97 HOH HOH . 
L 5 HOH B 22 722 85 HOH HOH . 
M 5 HOH C 1 701 73 HOH HOH . 
M 5 HOH C 2 702 19 HOH HOH . 
M 5 HOH C 3 703 68 HOH HOH . 
M 5 HOH C 4 704 9 HOH HOH . 
M 5 HOH C 5 705 24 HOH HOH . 
M 5 HOH C 6 706 33 HOH HOH . 
M 5 HOH C 7 707 22 HOH HOH . 
M 5 HOH C 8 708 37 HOH HOH . 
M 5 HOH C 9 709 36 HOH HOH . 
M 5 HOH C 10 710 10 HOH HOH . 
M 5 HOH C 11 711 4 HOH HOH . 
M 5 HOH C 12 712 32 HOH HOH . 
M 5 HOH C 13 713 51 HOH HOH . 
M 5 HOH C 14 714 66 HOH HOH . 
M 5 HOH C 15 715 27 HOH HOH . 
M 5 HOH C 16 716 40 HOH HOH . 
M 5 HOH C 17 717 60 HOH HOH . 
M 5 HOH C 18 718 102 HOH HOH . 
M 5 HOH C 19 719 6 HOH HOH . 
M 5 HOH C 20 720 47 HOH HOH . 
M 5 HOH C 21 721 50 HOH HOH . 
M 5 HOH C 22 722 61 HOH HOH . 
M 5 HOH C 23 723 52 HOH HOH . 
M 5 HOH C 24 724 46 HOH HOH . 
M 5 HOH C 25 725 48 HOH HOH . 
M 5 HOH C 26 726 84 HOH HOH . 
M 5 HOH C 27 727 45 HOH HOH . 
M 5 HOH C 28 728 49 HOH HOH . 
M 5 HOH C 29 729 94 HOH HOH . 
N 5 HOH D 1 701 31 HOH HOH . 
N 5 HOH D 2 702 7 HOH HOH . 
N 5 HOH D 3 703 1 HOH HOH . 
N 5 HOH D 4 704 3 HOH HOH . 
N 5 HOH D 5 705 15 HOH HOH . 
N 5 HOH D 6 706 21 HOH HOH . 
N 5 HOH D 7 707 91 HOH HOH . 
N 5 HOH D 8 708 72 HOH HOH . 
N 5 HOH D 9 709 99 HOH HOH . 
N 5 HOH D 10 710 71 HOH HOH . 
N 5 HOH D 11 711 88 HOH HOH . 
N 5 HOH D 12 712 18 HOH HOH . 
N 5 HOH D 13 713 34 HOH HOH . 
N 5 HOH D 14 714 82 HOH HOH . 
N 5 HOH D 15 715 44 HOH HOH . 
N 5 HOH D 16 716 89 HOH HOH . 
N 5 HOH D 17 717 81 HOH HOH . 
N 5 HOH D 18 718 42 HOH HOH . 
N 5 HOH D 19 719 92 HOH HOH . 
N 5 HOH D 20 720 90 HOH HOH . 
N 5 HOH D 21 721 93 HOH HOH . 
N 5 HOH D 22 722 80 HOH HOH . 
N 5 HOH D 23 723 78 HOH HOH . 
N 5 HOH D 24 724 41 HOH HOH . 
N 5 HOH D 25 725 79 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P 4NP . . . E 3 27.976 26.3 15.178 1 73.76 ? P 4NP 601 A 1 
HETATM 2 O O1 4NP . . . E 3 26.573 26.645 15.918 1 78.29 ? O1 4NP 601 A 1 
HETATM 3 O O2 4NP . . . E 3 27.699 25.159 14.214 1 67.25 ? O2 4NP 601 A 1 
HETATM 4 O O3 4NP . . . E 3 28.325 27.613 14.526 1 73.61 ? O3 4NP 601 A 1 
HETATM 5 O O4 4NP . . . E 3 28.864 25.872 16.335 1 75.61 ? O4 4NP 601 A 1 
HETATM 6 C C1 4NP . . . E 3 26.472 27.709 16.786 1 78.19 ? C1 4NP 601 A 1 
HETATM 7 C C2 4NP . . . E 3 27.493 27.992 17.707 1 79.36 ? C2 4NP 601 A 1 
HETATM 8 C C3 4NP . . . E 3 27.381 29.071 18.565 1 77.93 ? C3 4NP 601 A 1 
HETATM 9 C C4 4NP . . . E 3 26.249 29.862 18.507 1 75.08 ? C4 4NP 601 A 1 
HETATM 10 C C5 4NP . . . E 3 25.223 29.598 17.603 1 75.98 ? C5 4NP 601 A 1 
HETATM 11 C C6 4NP . . . E 3 25.335 28.514 16.74 1 77.22 ? C6 4NP 601 A 1 
HETATM 12 N N 4NP . . . E 3 26.172 30.942 19.364 1 75.28 ? N 4NP 601 A 1 
HETATM 13 O O5 4NP . . . E 3 27.249 31.842 19.399 1 73.32 ? O5 4NP 601 A 1 
HETATM 14 O O6 4NP . . . E 3 25.176 31.084 20.053 1 77.7 ? O6 4NP 601 A 1 
#
_model_server_stats.io_time_ms              46 
_model_server_stats.parse_time_ms           35 
_model_server_stats.create_model_time_ms    79 
_model_server_stats.query_time_ms           472 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           14 
#