data_5AZQ # _model_server_result.job_id xNBKYe4sPyDYAThZV0zqRA _model_server_result.datetime_utc '2024-11-05 07:54:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5azq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1003}' # _entry.id 5AZQ # _exptl.entry_id 5AZQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 26.017 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CYANIDE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.64 _cell.angle_gamma 90 _cell.entry_id 5AZQ _cell.length_a 34.774 _cell.length_b 28.808 _cell.length_c 63.258 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AZQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 B CO J1R . A J1R 1001 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.118 ? metalc ? metalc2 A NE2 HIS 93 A HIS 93 1_555 C CO J1S . A J1S 1002 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.134 ? metalc ? metalc3 B CO J1R . A J1R 1001 1_555 D C CYN . A CYN 1003 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc4 C CO J1S . A J1S 1002 1_555 D C CYN . A CYN 1003 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.076 ? # _chem_comp.formula 'C N -1' _chem_comp.formula_weight 26.017 _chem_comp.id CYN _chem_comp.mon_nstd_flag . _chem_comp.name 'CYANIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 C _chem_comp_bond.atom_id_2 N _chem_comp_bond.comp_id CYN _chem_comp_bond.value_order trip _chem_comp_bond.pdbx_ordinal 70 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 5AZQ _atom_sites.fract_transf_matrix[1][1] 0.028757 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008051 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034713 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016416 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 J1R A 1 1001 1001 J1R CRC . C 3 J1S A 1 1002 1002 J1S CSC . D 4 CYN A 1 1003 1003 CYN CYN . E 5 SO4 A 1 1004 1156 SO4 SO4 . F 5 SO4 A 1 1005 1157 SO4 SO4 . G 6 HOH A 1 1101 35 HOH HOH . G 6 HOH A 2 1102 121 HOH HOH . G 6 HOH A 3 1103 106 HOH HOH . G 6 HOH A 4 1104 23 HOH HOH . G 6 HOH A 5 1105 88 HOH HOH . G 6 HOH A 6 1106 33 HOH HOH . G 6 HOH A 7 1107 27 HOH HOH . G 6 HOH A 8 1108 78 HOH HOH . G 6 HOH A 9 1109 104 HOH HOH . G 6 HOH A 10 1110 28 HOH HOH . G 6 HOH A 11 1111 16 HOH HOH . G 6 HOH A 12 1112 70 HOH HOH . G 6 HOH A 13 1113 54 HOH HOH . G 6 HOH A 14 1114 75 HOH HOH . G 6 HOH A 15 1115 3 HOH HOH . G 6 HOH A 16 1116 114 HOH HOH . G 6 HOH A 17 1117 60 HOH HOH . G 6 HOH A 18 1118 48 HOH HOH . G 6 HOH A 19 1119 8 HOH HOH . G 6 HOH A 20 1120 47 HOH HOH . G 6 HOH A 21 1121 67 HOH HOH . G 6 HOH A 22 1122 92 HOH HOH . G 6 HOH A 23 1123 50 HOH HOH . G 6 HOH A 24 1124 85 HOH HOH . G 6 HOH A 25 1125 138 HOH HOH . G 6 HOH A 26 1126 12 HOH HOH . G 6 HOH A 27 1127 14 HOH HOH . G 6 HOH A 28 1128 11 HOH HOH . G 6 HOH A 29 1129 2 HOH HOH . G 6 HOH A 30 1130 105 HOH HOH . G 6 HOH A 31 1131 63 HOH HOH . G 6 HOH A 32 1132 30 HOH HOH . G 6 HOH A 33 1133 24 HOH HOH . G 6 HOH A 34 1134 131 HOH HOH . G 6 HOH A 35 1135 6 HOH HOH . G 6 HOH A 36 1136 71 HOH HOH . G 6 HOH A 37 1137 5 HOH HOH . G 6 HOH A 38 1138 25 HOH HOH . G 6 HOH A 39 1139 26 HOH HOH . G 6 HOH A 40 1140 55 HOH HOH . G 6 HOH A 41 1141 103 HOH HOH . G 6 HOH A 42 1142 32 HOH HOH . G 6 HOH A 43 1143 69 HOH HOH . G 6 HOH A 44 1144 10 HOH HOH . G 6 HOH A 45 1145 79 HOH HOH . G 6 HOH A 46 1146 49 HOH HOH . G 6 HOH A 47 1147 31 HOH HOH . G 6 HOH A 48 1148 117 HOH HOH . G 6 HOH A 49 1149 19 HOH HOH . G 6 HOH A 50 1150 15 HOH HOH . G 6 HOH A 51 1151 95 HOH HOH . G 6 HOH A 52 1152 57 HOH HOH . G 6 HOH A 53 1153 36 HOH HOH . G 6 HOH A 54 1154 45 HOH HOH . G 6 HOH A 55 1155 37 HOH HOH . G 6 HOH A 56 1156 76 HOH HOH . G 6 HOH A 57 1157 1 HOH HOH . G 6 HOH A 58 1158 90 HOH HOH . G 6 HOH A 59 1159 59 HOH HOH . G 6 HOH A 60 1160 43 HOH HOH . G 6 HOH A 61 1161 82 HOH HOH . G 6 HOH A 62 1162 38 HOH HOH . G 6 HOH A 63 1163 9 HOH HOH . G 6 HOH A 64 1164 73 HOH HOH . G 6 HOH A 65 1165 18 HOH HOH . G 6 HOH A 66 1166 62 HOH HOH . G 6 HOH A 67 1167 46 HOH HOH . G 6 HOH A 68 1168 34 HOH HOH . G 6 HOH A 69 1169 22 HOH HOH . G 6 HOH A 70 1170 72 HOH HOH . G 6 HOH A 71 1171 115 HOH HOH . G 6 HOH A 72 1172 41 HOH HOH . G 6 HOH A 73 1173 44 HOH HOH . G 6 HOH A 74 1174 77 HOH HOH . G 6 HOH A 75 1175 84 HOH HOH . G 6 HOH A 76 1176 91 HOH HOH . G 6 HOH A 77 1177 87 HOH HOH . G 6 HOH A 78 1178 134 HOH HOH . G 6 HOH A 79 1179 100 HOH HOH . G 6 HOH A 80 1180 53 HOH HOH . G 6 HOH A 81 1181 58 HOH HOH . G 6 HOH A 82 1182 4 HOH HOH . G 6 HOH A 83 1183 20 HOH HOH . G 6 HOH A 84 1184 66 HOH HOH . G 6 HOH A 85 1185 129 HOH HOH . G 6 HOH A 86 1186 102 HOH HOH . G 6 HOH A 87 1187 83 HOH HOH . G 6 HOH A 88 1188 29 HOH HOH . G 6 HOH A 89 1189 56 HOH HOH . G 6 HOH A 90 1190 40 HOH HOH . G 6 HOH A 91 1191 7 HOH HOH . G 6 HOH A 92 1192 93 HOH HOH . G 6 HOH A 93 1193 122 HOH HOH . G 6 HOH A 94 1194 123 HOH HOH . G 6 HOH A 95 1195 112 HOH HOH . G 6 HOH A 96 1196 64 HOH HOH . G 6 HOH A 97 1197 94 HOH HOH . G 6 HOH A 98 1198 89 HOH HOH . G 6 HOH A 99 1199 17 HOH HOH . G 6 HOH A 100 1200 109 HOH HOH . G 6 HOH A 101 1201 113 HOH HOH . G 6 HOH A 102 1202 52 HOH HOH . G 6 HOH A 103 1203 97 HOH HOH . G 6 HOH A 104 1204 86 HOH HOH . G 6 HOH A 105 1205 21 HOH HOH . G 6 HOH A 106 1206 118 HOH HOH . G 6 HOH A 107 1207 135 HOH HOH . G 6 HOH A 108 1208 107 HOH HOH . G 6 HOH A 109 1209 98 HOH HOH . G 6 HOH A 110 1210 13 HOH HOH . G 6 HOH A 111 1211 99 HOH HOH . G 6 HOH A 112 1212 80 HOH HOH . G 6 HOH A 113 1213 116 HOH HOH . G 6 HOH A 114 1214 108 HOH HOH . G 6 HOH A 115 1215 133 HOH HOH . G 6 HOH A 116 1216 141 HOH HOH . G 6 HOH A 117 1217 51 HOH HOH . G 6 HOH A 118 1218 130 HOH HOH . G 6 HOH A 119 1219 39 HOH HOH . G 6 HOH A 120 1220 61 HOH HOH . G 6 HOH A 121 1221 139 HOH HOH . G 6 HOH A 122 1222 68 HOH HOH . G 6 HOH A 123 1223 140 HOH HOH . G 6 HOH A 124 1224 110 HOH HOH . G 6 HOH A 125 1225 119 HOH HOH . G 6 HOH A 126 1226 111 HOH HOH . G 6 HOH A 127 1227 65 HOH HOH . G 6 HOH A 128 1228 96 HOH HOH . G 6 HOH A 129 1229 81 HOH HOH . G 6 HOH A 130 1230 124 HOH HOH . G 6 HOH A 131 1231 74 HOH HOH . G 6 HOH A 132 1232 42 HOH HOH . G 6 HOH A 133 1233 125 HOH HOH . G 6 HOH A 134 1234 101 HOH HOH . G 6 HOH A 135 1235 126 HOH HOH . G 6 HOH A 136 1236 136 HOH HOH . G 6 HOH A 137 1237 120 HOH HOH . G 6 HOH A 138 1238 128 HOH HOH . G 6 HOH A 139 1239 127 HOH HOH . G 6 HOH A 140 1240 132 HOH HOH . G 6 HOH A 141 1241 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C CYN . . . D 4 8.249 -5.487 13.582 1 14.62 ? C CYN 1003 A 1 HETATM 2 N N CYN . . . D 4 8.676 -5.094 12.584 1 20.22 ? N CYN 1003 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 2 #