data_5AZT # _model_server_result.job_id xmFyaxTHyEOWS0OGI51V3A _model_server_result.datetime_utc '2024-12-22 03:32:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5azt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 5AZT # _exptl.entry_id 5AZT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 344.488 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4~{Z},7~{Z},10~{Z},13~{Z},19~{Z})-17-oxidanylidenedocosa-4,7,10,13,19-pentaenoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5AZT _cell.length_a 59.46 _cell.length_b 59.46 _cell.length_c 317.94 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AZT _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 76 A CYS 275 1_555 D C15 4M5 . A 4M5 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.785 ? covale ? covale2 B SG CYS 76 B CYS 275 1_555 E C15 4M5 . B 4M5 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.829 ? # _chem_comp.formula 'C22 H32 O3' _chem_comp.formula_weight 344.488 _chem_comp.id 4M5 _chem_comp.mon_nstd_flag . _chem_comp.name '(4~{Z},7~{Z},10~{Z},13~{Z},19~{Z})-17-oxidanylidenedocosa-4,7,10,13,19-pentaenoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C15 4M5 sing 1 n n C16 C17 4M5 sing 2 n n C15 C14 4M5 sing 3 n n O23 C17 4M5 doub 4 n n C17 C18 4M5 sing 5 n n C14 C13 4M5 doub 6 z n C19 C18 4M5 sing 7 n n C19 C20 4M5 doub 8 z n O24 C1 4M5 doub 9 n n O25 C1 4M5 sing 10 n n C1 C2 4M5 sing 11 n n C13 C12 4M5 sing 12 n n C20 C21 4M5 sing 13 n n C12 C11 4M5 sing 14 n n C3 C2 4M5 sing 15 n n C3 C4 4M5 sing 16 n n C9 C8 4M5 sing 17 n n C9 C10 4M5 sing 18 n n C4 C5 4M5 doub 19 z n C11 C10 4M5 doub 20 z n C21 C22 4M5 sing 21 n n C6 C5 4M5 sing 22 n n C6 C7 4M5 sing 23 n n C8 C7 4M5 doub 24 z n C18 H1 4M5 sing 25 n n C18 H2 4M5 sing 26 n n C19 H3 4M5 sing 27 n n C20 H4 4M5 sing 28 n n C21 H5 4M5 sing 29 n n C21 H6 4M5 sing 30 n n C22 H7 4M5 sing 31 n n C22 H8 4M5 sing 32 n n C22 H9 4M5 sing 33 n n C16 H10 4M5 sing 34 n n C16 H11 4M5 sing 35 n n C15 H12 4M5 sing 36 n n C15 H13 4M5 sing 37 n n C14 H14 4M5 sing 38 n n C13 H15 4M5 sing 39 n n C12 H16 4M5 sing 40 n n C12 H17 4M5 sing 41 n n C11 H18 4M5 sing 42 n n C10 H19 4M5 sing 43 n n C9 H20 4M5 sing 44 n n C9 H21 4M5 sing 45 n n C8 H22 4M5 sing 46 n n C7 H23 4M5 sing 47 n n C6 H24 4M5 sing 48 n n C6 H25 4M5 sing 49 n n C5 H26 4M5 sing 50 n n C4 H27 4M5 sing 51 n n C3 H28 4M5 sing 52 n n C3 H29 4M5 sing 53 n n C2 H30 4M5 sing 54 n n C2 H31 4M5 sing 55 n n O25 H32 4M5 sing 56 n n # _atom_sites.entry_id 5AZT _atom_sites.fract_transf_matrix[1][1] 0.016818 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016818 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003145 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 4M5 A 1 501 1 4M5 15a . E 3 4M5 B 1 501 1 4M5 15a . F 4 HOH A 1 601 23 HOH HOH . F 4 HOH A 2 602 21 HOH HOH . F 4 HOH A 3 603 14 HOH HOH . F 4 HOH A 4 604 15 HOH HOH . F 4 HOH A 5 605 2 HOH HOH . F 4 HOH A 6 606 10 HOH HOH . F 4 HOH A 7 607 1 HOH HOH . F 4 HOH A 8 608 19 HOH HOH . F 4 HOH A 9 609 17 HOH HOH . F 4 HOH A 10 610 20 HOH HOH . F 4 HOH A 11 611 24 HOH HOH . F 4 HOH A 12 612 12 HOH HOH . F 4 HOH A 13 613 7 HOH HOH . F 4 HOH A 14 614 18 HOH HOH . F 4 HOH A 15 615 16 HOH HOH . G 4 HOH B 1 601 8 HOH HOH . G 4 HOH B 2 602 4 HOH HOH . G 4 HOH B 3 603 9 HOH HOH . G 4 HOH B 4 604 6 HOH HOH . G 4 HOH B 5 605 13 HOH HOH . G 4 HOH B 6 606 11 HOH HOH . G 4 HOH B 7 607 22 HOH HOH . G 4 HOH B 8 608 5 HOH HOH . G 4 HOH B 9 609 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 4M5 . . . D 3 -4.231 -20.51 -15.792 1 44.06 ? O23 4M5 501 A 1 HETATM 2 C C17 4M5 . . . D 3 -4.657 -21.641 -15.779 1 42.33 ? C17 4M5 501 A 1 HETATM 3 C C18 4M5 . . . D 3 -4.262 -22.547 -14.668 1 41.52 ? C18 4M5 501 A 1 HETATM 4 C C19 4M5 . . . D 3 -2.926 -23.136 -15.065 1 41.01 ? C19 4M5 501 A 1 HETATM 5 C C20 4M5 . . . D 3 -1.888 -23.188 -14.226 1 40.99 ? C20 4M5 501 A 1 HETATM 6 C C21 4M5 . . . D 3 -1.965 -22.662 -12.813 1 40.01 ? C21 4M5 501 A 1 HETATM 7 C C22 4M5 . . . D 3 -0.587 -22.251 -12.365 1 39.18 ? C22 4M5 501 A 1 HETATM 8 C C16 4M5 . . . D 3 -5.541 -22.159 -16.878 1 42.52 ? C16 4M5 501 A 1 HETATM 9 C C15 4M5 . . . D 3 -7.068 -22.011 -16.705 1 42.02 ? C15 4M5 501 A 1 HETATM 10 C C14 4M5 . . . D 3 -7.459 -21.562 -15.275 1 43.68 ? C14 4M5 501 A 1 HETATM 11 C C13 4M5 . . . D 3 -7.927 -22.303 -14.249 1 44.45 ? C13 4M5 501 A 1 HETATM 12 C C12 4M5 . . . D 3 -8.189 -23.806 -14.203 1 45.48 ? C12 4M5 501 A 1 HETATM 13 C C11 4M5 . . . D 3 -8.753 -24.121 -12.834 1 45.09 ? C11 4M5 501 A 1 HETATM 14 C C10 4M5 . . . D 3 -9.365 -25.254 -12.457 1 43.99 ? C10 4M5 501 A 1 HETATM 15 C C9 4M5 . . . D 3 -9.619 -26.473 -13.309 1 42.7 ? C9 4M5 501 A 1 HETATM 16 C C8 4M5 . . . D 3 -9.264 -27.719 -12.511 1 42.1 ? C8 4M5 501 A 1 HETATM 17 C C7 4M5 . . . D 3 -10.099 -28.75 -12.279 1 40.98 ? C7 4M5 501 A 1 HETATM 18 C C6 4M5 . . . D 3 -11.52 -28.817 -12.801 1 40.8 ? C6 4M5 501 A 1 HETATM 19 C C5 4M5 . . . D 3 -12.113 -30.201 -12.635 1 40 ? C5 4M5 501 A 1 HETATM 20 C C4 4M5 . . . D 3 -13.363 -30.514 -13.023 1 40.12 ? C4 4M5 501 A 1 HETATM 21 C C3 4M5 . . . D 3 -14.324 -29.524 -13.673 1 40.78 ? C3 4M5 501 A 1 HETATM 22 C C2 4M5 . . . D 3 -15.805 -29.872 -13.45 1 40.09 ? C2 4M5 501 A 1 HETATM 23 C C1 4M5 . . . D 3 -16.734 -29.352 -14.559 1 38.89 ? C1 4M5 501 A 1 HETATM 24 O O25 4M5 . . . D 3 -16.634 -28.171 -14.956 1 37.3 ? O25 4M5 501 A 1 HETATM 25 O O24 4M5 . . . D 3 -17.606 -30.104 -15.059 1 36.72 ? O24 4M5 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #