data_5B09 # _model_server_result.job_id 9DjfwLT6k8ZzRYZhIcy2kg _model_server_result.datetime_utc '2025-03-02 22:39:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5b09 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5B09 # _exptl.entry_id 5B09 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 224.253 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2,4-bis(oxidanyl)-6-pentyl-benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.47 _cell.angle_gamma 90 _cell.entry_id 5B09 _cell.length_a 86.48 _cell.length_b 30.44 _cell.length_c 36.89 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5B09 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H16 O4' _chem_comp.formula_weight 224.253 _chem_comp.id 4MX _chem_comp.mon_nstd_flag . _chem_comp.name '2,4-bis(oxidanyl)-6-pentyl-benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C11 4MX doub 1 n n O2 C9 4MX sing 2 n n C11 C10 4MX sing 3 n n C11 O1 4MX sing 4 n n C9 C8 4MX doub 5 n y C9 C10 4MX sing 6 n y C8 C7 4MX sing 7 n y C10 C5 4MX doub 8 n y C7 O3 4MX sing 9 n n C7 C6 4MX doub 10 n y C5 C6 4MX sing 11 n y C5 C4 4MX sing 12 n n C4 C3 4MX sing 13 n n C3 C2 4MX sing 14 n n C2 C1 4MX sing 15 n n C1 C 4MX sing 16 n n C1 H1 4MX sing 17 n n C1 H2 4MX sing 18 n n O1 H3 4MX sing 19 n n O2 H4 4MX sing 20 n n C2 H5 4MX sing 21 n n C2 H6 4MX sing 22 n n C3 H7 4MX sing 23 n n C3 H8 4MX sing 24 n n C4 H9 4MX sing 25 n n C4 H10 4MX sing 26 n n C6 H11 4MX sing 27 n n C8 H12 4MX sing 28 n n O3 H13 4MX sing 29 n n C H14 4MX sing 30 n n C H15 4MX sing 31 n n C H16 4MX sing 32 n n # _atom_sites.entry_id 5B09 _atom_sites.fract_transf_matrix[1][1] 0.011563 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003862 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.032852 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02858 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4MX A 1 201 1 4MX OLA . C 3 HOH A 1 301 14 HOH HOH . C 3 HOH A 2 302 31 HOH HOH . C 3 HOH A 3 303 59 HOH HOH . C 3 HOH A 4 304 48 HOH HOH . C 3 HOH A 5 305 3 HOH HOH . C 3 HOH A 6 306 58 HOH HOH . C 3 HOH A 7 307 17 HOH HOH . C 3 HOH A 8 308 52 HOH HOH . C 3 HOH A 9 309 45 HOH HOH . C 3 HOH A 10 310 19 HOH HOH . C 3 HOH A 11 311 1 HOH HOH . C 3 HOH A 12 312 28 HOH HOH . C 3 HOH A 13 313 30 HOH HOH . C 3 HOH A 14 314 26 HOH HOH . C 3 HOH A 15 315 9 HOH HOH . C 3 HOH A 16 316 4 HOH HOH . C 3 HOH A 17 317 5 HOH HOH . C 3 HOH A 18 318 47 HOH HOH . C 3 HOH A 19 319 12 HOH HOH . C 3 HOH A 20 320 37 HOH HOH . C 3 HOH A 21 321 33 HOH HOH . C 3 HOH A 22 322 2 HOH HOH . C 3 HOH A 23 323 8 HOH HOH . C 3 HOH A 24 324 53 HOH HOH . C 3 HOH A 25 325 36 HOH HOH . C 3 HOH A 26 326 27 HOH HOH . C 3 HOH A 27 327 10 HOH HOH . C 3 HOH A 28 328 7 HOH HOH . C 3 HOH A 29 329 15 HOH HOH . C 3 HOH A 30 330 24 HOH HOH . C 3 HOH A 31 331 22 HOH HOH . C 3 HOH A 32 332 29 HOH HOH . C 3 HOH A 33 333 35 HOH HOH . C 3 HOH A 34 334 6 HOH HOH . C 3 HOH A 35 335 43 HOH HOH . C 3 HOH A 36 336 11 HOH HOH . C 3 HOH A 37 337 67 HOH HOH . C 3 HOH A 38 338 34 HOH HOH . C 3 HOH A 39 339 16 HOH HOH . C 3 HOH A 40 340 66 HOH HOH . C 3 HOH A 41 341 25 HOH HOH . C 3 HOH A 42 342 21 HOH HOH . C 3 HOH A 43 343 18 HOH HOH . C 3 HOH A 44 344 39 HOH HOH . C 3 HOH A 45 345 41 HOH HOH . C 3 HOH A 46 346 49 HOH HOH . C 3 HOH A 47 347 69 HOH HOH . C 3 HOH A 48 348 46 HOH HOH . C 3 HOH A 49 349 13 HOH HOH . C 3 HOH A 50 350 42 HOH HOH . C 3 HOH A 51 351 54 HOH HOH . C 3 HOH A 52 352 64 HOH HOH . C 3 HOH A 53 353 44 HOH HOH . C 3 HOH A 54 354 61 HOH HOH . C 3 HOH A 55 355 23 HOH HOH . C 3 HOH A 56 356 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4MX . . . B 2 9.396 18.968 8.477 1 25.21 ? C1 4MX 201 A 1 HETATM 2 O O1 4MX . . . B 2 12.326 19.92 4.563 1 26.28 ? O1 4MX 201 A 1 HETATM 3 O O2 4MX . . . B 2 14.585 16.997 2.784 1 41.27 ? O2 4MX 201 A 1 HETATM 4 C C2 4MX . . . B 2 10.81 19.518 8.378 1 24.18 ? C2 4MX 201 A 1 HETATM 5 C C3 4MX . . . B 2 11.78 18.467 7.857 1 32.42 ? C3 4MX 201 A 1 HETATM 6 C C4 4MX . . . B 2 11.264 17.98 6.516 1 32.38 ? C4 4MX 201 A 1 HETATM 7 C C5 4MX . . . B 2 12.276 17.124 5.786 1 31.53 ? C5 4MX 201 A 1 HETATM 8 C C6 4MX . . . B 2 12.552 15.85 6.272 1 35.71 ? C6 4MX 201 A 1 HETATM 9 C C7 4MX . . . B 2 13.459 14.999 5.644 1 34.12 ? C7 4MX 201 A 1 HETATM 10 C C8 4MX . . . B 2 14.13 15.386 4.485 1 35.06 ? C8 4MX 201 A 1 HETATM 11 C C9 4MX . . . B 2 13.917 16.639 3.919 1 35.62 ? C9 4MX 201 A 1 HETATM 12 C C10 4MX . . . B 2 12.963 17.585 4.553 1 26.24 ? C10 4MX 201 A 1 HETATM 13 C C11 4MX . . . B 2 12.749 18.935 3.917 1 31.44 ? C11 4MX 201 A 1 HETATM 14 O O 4MX . . . B 2 13.046 19.05 2.712 1 31.57 ? O 4MX 201 A 1 HETATM 15 O O3 4MX . . . B 2 13.686 13.766 6.179 1 42.87 ? O3 4MX 201 A 1 HETATM 16 C C 4MX . . . B 2 8.498 19.987 9.141 1 19.75 ? C 4MX 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #