data_5B1D
#
_model_server_result.job_id            e6G83j--5KShfW2tJ4hCDw 
_model_server_result.datetime_utc      '2025-08-01 00:05:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5b1d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1001}' 
#
_entry.id    5B1D 
#
_exptl.entry_id    5B1D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5B1D 
_cell.length_a            68.8 
_cell.length_b            68.8 
_cell.length_c            109.1 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5B1D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 34 A CYS 34 1_555 A SG CYS 123 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 178 A CYS 178 1_555 A SG CYS 249 A CYS 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc1 A O THR 16 A THR 16 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc2 A O PRO 175 A PRO 175 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? 
metalc ? metalc3 A O VAL 177 A VAL 177 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc4 A OD1 ASP 200 A ASP 200 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? 
metalc ? metalc5 A OD2 ASP 200 A ASP 200 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? 
metalc ? metalc6 A OD1 ASP 260 A ASP 260 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc7 A OD2 ASP 260 A ASP 260 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? 
metalc ? metalc8 B CA CA . A CA 1001 1_555 D O HOH . A HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? 
metalc ? metalc9 B CA CA . A CA 1001 1_555 D O HOH . A HOH 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
metalc ? metalc10 B CA CA . A CA 1001 1_555 D O HOH . A HOH 1140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc11 B CA CA . A CA 1001 1_555 D O HOH . A HOH 1161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? 
metalc ? metalc12 C CA CA . A CA 1002 1_555 D O HOH . A HOH 1129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? 
metalc ? metalc13 C CA CA . A CA 1002 1_555 D O HOH . A HOH 1152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? 
metalc ? metalc14 C CA CA . A CA 1002 1_555 D O HOH . A HOH 1165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? 
metalc ? metalc15 C CA CA . A CA 1002 1_555 D O HOH . A HOH 1170 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.013 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5B1D 
_atom_sites.fract_transf_matrix[1][1]    0.014535 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014535 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009166 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 1001 1001 CA CA . 
C 2 CA A 1 1002 1002 CA CA . 
D 3 HOH A 1 1101 31 HOH HOH . 
D 3 HOH A 2 1102 24 HOH HOH . 
D 3 HOH A 3 1103 27 HOH HOH . 
D 3 HOH A 4 1104 15 HOH HOH . 
D 3 HOH A 5 1105 60 HOH HOH . 
D 3 HOH A 6 1106 44 HOH HOH . 
D 3 HOH A 7 1107 48 HOH HOH . 
D 3 HOH A 8 1108 12 HOH HOH . 
D 3 HOH A 9 1109 40 HOH HOH . 
D 3 HOH A 10 1110 13 HOH HOH . 
D 3 HOH A 11 1111 43 HOH HOH . 
D 3 HOH A 12 1112 14 HOH HOH . 
D 3 HOH A 13 1113 21 HOH HOH . 
D 3 HOH A 14 1114 3 HOH HOH . 
D 3 HOH A 15 1115 57 HOH HOH . 
D 3 HOH A 16 1116 23 HOH HOH . 
D 3 HOH A 17 1117 50 HOH HOH . 
D 3 HOH A 18 1118 35 HOH HOH . 
D 3 HOH A 19 1119 7 HOH HOH . 
D 3 HOH A 20 1120 49 HOH HOH . 
D 3 HOH A 21 1121 28 HOH HOH . 
D 3 HOH A 22 1122 20 HOH HOH . 
D 3 HOH A 23 1123 8 HOH HOH . 
D 3 HOH A 24 1124 64 HOH HOH . 
D 3 HOH A 25 1125 30 HOH HOH . 
D 3 HOH A 26 1126 18 HOH HOH . 
D 3 HOH A 27 1127 34 HOH HOH . 
D 3 HOH A 28 1128 19 HOH HOH . 
D 3 HOH A 29 1129 47 HOH HOH . 
D 3 HOH A 30 1130 61 HOH HOH . 
D 3 HOH A 31 1131 26 HOH HOH . 
D 3 HOH A 32 1132 9 HOH HOH . 
D 3 HOH A 33 1133 71 HOH HOH . 
D 3 HOH A 34 1134 10 HOH HOH . 
D 3 HOH A 35 1135 42 HOH HOH . 
D 3 HOH A 36 1136 36 HOH HOH . 
D 3 HOH A 37 1137 45 HOH HOH . 
D 3 HOH A 38 1138 11 HOH HOH . 
D 3 HOH A 39 1139 54 HOH HOH . 
D 3 HOH A 40 1140 22 HOH HOH . 
D 3 HOH A 41 1141 63 HOH HOH . 
D 3 HOH A 42 1142 55 HOH HOH . 
D 3 HOH A 43 1143 17 HOH HOH . 
D 3 HOH A 44 1144 29 HOH HOH . 
D 3 HOH A 45 1145 37 HOH HOH . 
D 3 HOH A 46 1146 2 HOH HOH . 
D 3 HOH A 47 1147 4 HOH HOH . 
D 3 HOH A 48 1148 32 HOH HOH . 
D 3 HOH A 49 1149 5 HOH HOH . 
D 3 HOH A 50 1150 46 HOH HOH . 
D 3 HOH A 51 1151 33 HOH HOH . 
D 3 HOH A 52 1152 53 HOH HOH . 
D 3 HOH A 53 1153 58 HOH HOH . 
D 3 HOH A 54 1154 39 HOH HOH . 
D 3 HOH A 55 1155 16 HOH HOH . 
D 3 HOH A 56 1156 6 HOH HOH . 
D 3 HOH A 57 1157 38 HOH HOH . 
D 3 HOH A 58 1158 51 HOH HOH . 
D 3 HOH A 59 1159 67 HOH HOH . 
D 3 HOH A 60 1160 59 HOH HOH . 
D 3 HOH A 61 1161 1 HOH HOH . 
D 3 HOH A 62 1162 62 HOH HOH . 
D 3 HOH A 63 1163 41 HOH HOH . 
D 3 HOH A 64 1164 25 HOH HOH . 
D 3 HOH A 65 1165 52 HOH HOH . 
D 3 HOH A 66 1166 69 HOH HOH . 
D 3 HOH A 67 1167 68 HOH HOH . 
D 3 HOH A 68 1168 66 HOH HOH . 
D 3 HOH A 69 1169 70 HOH HOH . 
D 3 HOH A 70 1170 56 HOH HOH . 
D 3 HOH A 71 1171 65 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -0.924 
_atom_site.Cartn_y               20.575 
_atom_site.Cartn_z               27.286 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        34.21 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           1001 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              42 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           1 
#