data_5B1I # _model_server_result.job_id asw_zeHMbrinyKY51KmF4g _model_server_result.datetime_utc '2024-11-02 03:34:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5b1i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":401}' # _entry.id 5B1I # _exptl.entry_id 5B1I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 378.338 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(3-HYDROXY-2-METHYL-5-{[(TRIHYDROXYPHOSPHORANYL)OXY]METHYL}PYRIDIN-4-YL)METHYLENE]METHIONINE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5B1I _cell.length_a 165.94 _cell.length_b 165.94 _cell.length_c 259.49 _cell.Z_PDB 64 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5B1I _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,K,L,M,N 1 1 C,D,O,P,Q,R,S,T 2 1 E,F,U,V,W,X,Y,Z 3 1 G,H,AA,BA,CA,DA,EA,FA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 L N N ? 2 O N N ? 2 R N N ? 2 U N N ? 2 X N N ? 2 AA N N ? 2 DA N N # _chem_comp.formula 'C13 H19 N2 O7 P S' _chem_comp.formula_weight 378.338 _chem_comp.id AA5 _chem_comp.mon_nstd_flag . _chem_comp.name N-[(3-HYDROXY-2-METHYL-5-{[(TRIHYDROXYPHOSPHORANYL)OXY]METHYL}PYRIDIN-4-YL)METHYLENE]METHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA AA5 sing 1 n n N C4A AA5 doub 2 n n CA C AA5 sing 3 n n CA CB AA5 sing 4 n n CA HA AA5 sing 5 n n C O1 AA5 doub 6 n n C O2 AA5 sing 7 n n CB CG AA5 sing 8 n n CB HB1 AA5 sing 9 n n CB HB2 AA5 sing 10 n n CG SD AA5 sing 11 n n CG HG1 AA5 sing 12 n n CG HG2 AA5 sing 13 n n SD CE AA5 sing 14 n n CE HE1 AA5 sing 15 n n CE HE2 AA5 sing 16 n n CE HE3 AA5 sing 17 n n O2 HO2 AA5 sing 18 n n C2 C2A AA5 sing 19 n n C2 C3 AA5 doub 20 n y C2 N1 AA5 sing 21 n y C2A H2A1 AA5 sing 22 n n C2A H2A2 AA5 sing 23 n n C2A H2A3 AA5 sing 24 n n C3 C4 AA5 sing 25 n y C3 O3 AA5 sing 26 n n C4 C4A AA5 sing 27 n n C4 C5 AA5 doub 28 n y C4A H4A AA5 sing 29 n n C5 C5A AA5 sing 30 n n C5 C6 AA5 sing 31 n y C5A O4P AA5 sing 32 n n C5A H5A1 AA5 sing 33 n n C5A H5A2 AA5 sing 34 n n C6 N1 AA5 doub 35 n y C6 H6 AA5 sing 36 n n O1P P AA5 doub 37 n n O2P P AA5 sing 38 n n O2P H2P AA5 sing 39 n n O3 HO3 AA5 sing 40 n n O3P P AA5 sing 41 n n O3P H3P AA5 sing 42 n n O4P P AA5 sing 43 n n # _atom_sites.entry_id 5B1I _atom_sites.fract_transf_matrix[1][1] 0.006026 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006026 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003854 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 AA5 A 1 401 401 AA5 AA5 . J 3 SO4 A 1 402 409 SO4 SO4 . K 3 SO4 A 1 403 417 SO4 SO4 . L 2 AA5 B 1 401 402 AA5 AA5 . M 3 SO4 B 1 402 410 SO4 SO4 . N 3 SO4 B 1 403 418 SO4 SO4 . O 2 AA5 C 1 401 403 AA5 AA5 . P 3 SO4 C 1 402 411 SO4 SO4 . Q 3 SO4 C 1 403 419 SO4 SO4 . R 2 AA5 D 1 401 404 AA5 AA5 . S 3 SO4 D 1 402 413 SO4 SO4 . T 3 SO4 D 1 403 421 SO4 SO4 . U 2 AA5 E 1 401 405 AA5 AA5 . V 3 SO4 E 1 402 412 SO4 SO4 . W 3 SO4 E 1 403 420 SO4 SO4 . X 2 AA5 F 1 401 406 AA5 AA5 . Y 3 SO4 F 1 402 414 SO4 SO4 . Z 3 SO4 F 1 403 422 SO4 SO4 . AA 2 AA5 G 1 401 407 AA5 AA5 . BA 3 SO4 G 1 402 415 SO4 SO4 . CA 3 SO4 G 1 403 423 SO4 SO4 . DA 2 AA5 H 1 401 408 AA5 AA5 . EA 3 SO4 H 1 402 416 SO4 SO4 . FA 3 SO4 H 1 403 424 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N AA5 . . . O 2 21.762 55.22 -17.699 1 24.39 ? N AA5 401 C 1 HETATM 2 C CA AA5 . . . O 2 22.438 54.556 -16.582 1 24.02 ? CA AA5 401 C 1 HETATM 3 C C AA5 . . . O 2 21.394 54.021 -15.603 1 24.27 ? C AA5 401 C 1 HETATM 4 O O1 AA5 . . . O 2 20.165 53.96 -15.924 1 23.47 ? O1 AA5 401 C 1 HETATM 5 C CB AA5 . . . O 2 23.387 55.562 -15.859 1 24.36 ? CB AA5 401 C 1 HETATM 6 C CG AA5 . . . O 2 22.65 56.839 -15.399 1 22.18 ? CG AA5 401 C 1 HETATM 7 S SD AA5 . . . O 2 23.862 58.04 -14.81 1 23.42 ? SD AA5 401 C 1 HETATM 8 C CE AA5 . . . O 2 22.967 59.58 -15.105 1 24.19 ? CE AA5 401 C 1 HETATM 9 O O2 AA5 . . . O 2 21.747 53.636 -14.45 1 25.1 ? O2 AA5 401 C 1 HETATM 10 C C2 AA5 . . . O 2 19.621 57.244 -20.823 1 19.67 ? C2 AA5 401 C 1 HETATM 11 C C2A AA5 . . . O 2 18.129 57.353 -20.854 1 19.93 ? C2A AA5 401 C 1 HETATM 12 C C3 AA5 . . . O 2 20.245 56.501 -19.81 1 21.36 ? C3 AA5 401 C 1 HETATM 13 C C4 AA5 . . . O 2 21.698 56.449 -19.786 1 22.73 ? C4 AA5 401 C 1 HETATM 14 C C4A AA5 . . . O 2 22.421 55.771 -18.672 1 23.54 ? C4A AA5 401 C 1 HETATM 15 C C5 AA5 . . . O 2 22.426 57.164 -20.815 1 22.27 ? C5 AA5 401 C 1 HETATM 16 C C5A AA5 . . . O 2 23.957 57.219 -20.843 1 21.83 ? C5A AA5 401 C 1 HETATM 17 C C6 AA5 . . . O 2 21.689 57.864 -21.774 1 21.78 ? C6 AA5 401 C 1 HETATM 18 N N1 AA5 . . . O 2 20.341 57.881 -21.744 1 19.89 ? N1 AA5 401 C 1 HETATM 19 O O1P AA5 . . . O 2 26.372 54.276 -21.092 1 17.07 ? O1P AA5 401 C 1 HETATM 20 O O2P AA5 . . . O 2 25.607 55.61 -19.052 1 18.49 ? O2P AA5 401 C 1 HETATM 21 O O3 AA5 . . . O 2 19.492 55.85 -18.873 1 21.48 ? O3 AA5 401 C 1 HETATM 22 O O3P AA5 . . . O 2 26.958 56.78 -20.973 1 16.78 ? O3P AA5 401 C 1 HETATM 23 O O4P AA5 . . . O 2 24.508 55.996 -21.379 1 20.87 ? O4P AA5 401 C 1 HETATM 24 P P AA5 . . . O 2 25.869 55.676 -20.632 1 18.75 ? P AA5 401 C 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 65 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #