data_5B2E # _model_server_result.job_id Bb5U9sRRgV38VmlKCIn1cw _model_server_result.datetime_utc '2024-12-12 17:27:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5b2e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":303}' # _entry.id 5B2E # _exptl.entry_id 5B2E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEXANE-1,6-DIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5B2E _cell.length_a 77.435 _cell.length_b 77.435 _cell.length_c 229.573 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5B2E _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 J N N ? 4 M N N ? 4 N N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id HEZ _chem_comp.mon_nstd_flag . _chem_comp.name HEXANE-1,6-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 HEZ sing 129 n n O1 HO1 HEZ sing 130 n n C1 C2 HEZ sing 131 n n C1 H11 HEZ sing 132 n n C1 H12 HEZ sing 133 n n C2 C3 HEZ sing 134 n n C2 H21 HEZ sing 135 n n C2 H22 HEZ sing 136 n n C3 C4 HEZ sing 137 n n C3 H31 HEZ sing 138 n n C3 H32 HEZ sing 139 n n C4 C5 HEZ sing 140 n n C4 H41 HEZ sing 141 n n C4 H42 HEZ sing 142 n n C5 C6 HEZ sing 143 n n C5 H51 HEZ sing 144 n n C5 H52 HEZ sing 145 n n C6 O6 HEZ sing 146 n n C6 H61 HEZ sing 147 n n C6 H62 HEZ sing 148 n n O6 HO6 HEZ sing 149 n n # _atom_sites.entry_id 5B2E _atom_sites.fract_transf_matrix[1][1] 0.012914 _atom_sites.fract_transf_matrix[1][2] 0.007456 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014912 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004356 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ZN A 1 301 1 ZN ZN . E 3 MQG A 1 302 1 MQG MPG . F 4 HEZ A 1 303 1 HEZ HEZ . G 4 HEZ A 1 304 4 HEZ HEZ . H 2 ZN B 1 301 2 ZN ZN . I 3 MQG B 1 302 2 MQG MPG . J 4 HEZ B 1 303 3 HEZ HEZ . K 2 ZN C 1 301 3 ZN ZN . L 3 MQG C 1 302 3 MQG MPG . M 4 HEZ C 1 303 2 HEZ HEZ . N 4 HEZ C 1 304 5 HEZ HEZ . O 5 HOH A 1 401 269 HOH HOH . O 5 HOH A 2 402 213 HOH HOH . O 5 HOH A 3 403 167 HOH HOH . O 5 HOH A 4 404 163 HOH HOH . O 5 HOH A 5 405 270 HOH HOH . O 5 HOH A 6 406 178 HOH HOH . O 5 HOH A 7 407 219 HOH HOH . O 5 HOH A 8 408 249 HOH HOH . O 5 HOH A 9 409 162 HOH HOH . O 5 HOH A 10 410 156 HOH HOH . O 5 HOH A 11 411 4 HOH HOH . O 5 HOH A 12 412 217 HOH HOH . O 5 HOH A 13 413 101 HOH HOH . O 5 HOH A 14 414 134 HOH HOH . O 5 HOH A 15 415 99 HOH HOH . O 5 HOH A 16 416 104 HOH HOH . O 5 HOH A 17 417 72 HOH HOH . O 5 HOH A 18 418 77 HOH HOH . O 5 HOH A 19 419 133 HOH HOH . O 5 HOH A 20 420 62 HOH HOH . O 5 HOH A 21 421 218 HOH HOH . O 5 HOH A 22 422 91 HOH HOH . O 5 HOH A 23 423 27 HOH HOH . O 5 HOH A 24 424 33 HOH HOH . O 5 HOH A 25 425 207 HOH HOH . O 5 HOH A 26 426 52 HOH HOH . O 5 HOH A 27 427 250 HOH HOH . O 5 HOH A 28 428 257 HOH HOH . O 5 HOH A 29 429 23 HOH HOH . O 5 HOH A 30 430 71 HOH HOH . O 5 HOH A 31 431 21 HOH HOH . O 5 HOH A 32 432 238 HOH HOH . O 5 HOH A 33 433 255 HOH HOH . O 5 HOH A 34 434 14 HOH HOH . O 5 HOH A 35 435 11 HOH HOH . O 5 HOH A 36 436 139 HOH HOH . O 5 HOH A 37 437 147 HOH HOH . O 5 HOH A 38 438 7 HOH HOH . O 5 HOH A 39 439 164 HOH HOH . O 5 HOH A 40 440 271 HOH HOH . O 5 HOH A 41 441 153 HOH HOH . O 5 HOH A 42 442 41 HOH HOH . O 5 HOH A 43 443 260 HOH HOH . O 5 HOH A 44 444 124 HOH HOH . O 5 HOH A 45 445 148 HOH HOH . O 5 HOH A 46 446 82 HOH HOH . O 5 HOH A 47 447 158 HOH HOH . O 5 HOH A 48 448 69 HOH HOH . O 5 HOH A 49 449 86 HOH HOH . O 5 HOH A 50 450 196 HOH HOH . O 5 HOH A 51 451 272 HOH HOH . O 5 HOH A 52 452 194 HOH HOH . O 5 HOH A 53 453 88 HOH HOH . O 5 HOH A 54 454 245 HOH HOH . O 5 HOH A 55 455 83 HOH HOH . O 5 HOH A 56 456 234 HOH HOH . O 5 HOH A 57 457 201 HOH HOH . O 5 HOH A 58 458 244 HOH HOH . O 5 HOH A 59 459 169 HOH HOH . O 5 HOH A 60 460 111 HOH HOH . O 5 HOH A 61 461 37 HOH HOH . O 5 HOH A 62 462 25 HOH HOH . O 5 HOH A 63 463 15 HOH HOH . O 5 HOH A 64 464 265 HOH HOH . O 5 HOH A 65 465 225 HOH HOH . O 5 HOH A 66 466 157 HOH HOH . O 5 HOH A 67 467 116 HOH HOH . O 5 HOH A 68 468 135 HOH HOH . O 5 HOH A 69 469 56 HOH HOH . O 5 HOH A 70 470 256 HOH HOH . O 5 HOH A 71 471 38 HOH HOH . O 5 HOH A 72 472 46 HOH HOH . O 5 HOH A 73 473 30 HOH HOH . O 5 HOH A 74 474 36 HOH HOH . O 5 HOH A 75 475 159 HOH HOH . O 5 HOH A 76 476 165 HOH HOH . O 5 HOH A 77 477 206 HOH HOH . O 5 HOH A 78 478 98 HOH HOH . O 5 HOH A 79 479 236 HOH HOH . O 5 HOH A 80 480 19 HOH HOH . O 5 HOH A 81 481 197 HOH HOH . O 5 HOH A 82 482 81 HOH HOH . O 5 HOH A 83 483 1 HOH HOH . O 5 HOH A 84 484 61 HOH HOH . O 5 HOH A 85 485 137 HOH HOH . O 5 HOH A 86 486 251 HOH HOH . O 5 HOH A 87 487 60 HOH HOH . O 5 HOH A 88 488 119 HOH HOH . O 5 HOH A 89 489 144 HOH HOH . O 5 HOH A 90 490 96 HOH HOH . O 5 HOH A 91 491 87 HOH HOH . O 5 HOH A 92 492 17 HOH HOH . O 5 HOH A 93 493 47 HOH HOH . O 5 HOH A 94 494 90 HOH HOH . O 5 HOH A 95 495 51 HOH HOH . O 5 HOH A 96 496 94 HOH HOH . O 5 HOH A 97 497 50 HOH HOH . O 5 HOH A 98 498 24 HOH HOH . O 5 HOH A 99 499 211 HOH HOH . O 5 HOH A 100 500 184 HOH HOH . O 5 HOH A 101 501 66 HOH HOH . O 5 HOH A 102 502 215 HOH HOH . O 5 HOH A 103 503 221 HOH HOH . O 5 HOH A 104 504 242 HOH HOH . O 5 HOH A 105 505 146 HOH HOH . O 5 HOH A 106 506 200 HOH HOH . O 5 HOH A 107 507 228 HOH HOH . O 5 HOH A 108 508 122 HOH HOH . O 5 HOH A 109 509 174 HOH HOH . O 5 HOH A 110 510 235 HOH HOH . O 5 HOH A 111 511 127 HOH HOH . O 5 HOH A 112 512 150 HOH HOH . O 5 HOH A 113 513 253 HOH HOH . P 5 HOH B 1 401 129 HOH HOH . P 5 HOH B 2 402 113 HOH HOH . P 5 HOH B 3 403 75 HOH HOH . P 5 HOH B 4 404 115 HOH HOH . P 5 HOH B 5 405 44 HOH HOH . P 5 HOH B 6 406 172 HOH HOH . P 5 HOH B 7 407 142 HOH HOH . P 5 HOH B 8 408 108 HOH HOH . P 5 HOH B 9 409 103 HOH HOH . P 5 HOH B 10 410 54 HOH HOH . P 5 HOH B 11 411 63 HOH HOH . P 5 HOH B 12 412 68 HOH HOH . P 5 HOH B 13 413 85 HOH HOH . P 5 HOH B 14 414 183 HOH HOH . P 5 HOH B 15 415 161 HOH HOH . P 5 HOH B 16 416 128 HOH HOH . P 5 HOH B 17 417 131 HOH HOH . P 5 HOH B 18 418 177 HOH HOH . P 5 HOH B 19 419 125 HOH HOH . P 5 HOH B 20 420 64 HOH HOH . P 5 HOH B 21 421 202 HOH HOH . P 5 HOH B 22 422 262 HOH HOH . P 5 HOH B 23 423 192 HOH HOH . P 5 HOH B 24 424 247 HOH HOH . P 5 HOH B 25 425 26 HOH HOH . P 5 HOH B 26 426 205 HOH HOH . P 5 HOH B 27 427 241 HOH HOH . P 5 HOH B 28 428 74 HOH HOH . P 5 HOH B 29 429 16 HOH HOH . P 5 HOH B 30 430 70 HOH HOH . P 5 HOH B 31 431 210 HOH HOH . P 5 HOH B 32 432 266 HOH HOH . P 5 HOH B 33 433 5 HOH HOH . P 5 HOH B 34 434 6 HOH HOH . P 5 HOH B 35 435 2 HOH HOH . P 5 HOH B 36 436 3 HOH HOH . P 5 HOH B 37 437 179 HOH HOH . P 5 HOH B 38 438 79 HOH HOH . P 5 HOH B 39 439 233 HOH HOH . P 5 HOH B 40 440 222 HOH HOH . P 5 HOH B 41 441 97 HOH HOH . P 5 HOH B 42 442 182 HOH HOH . P 5 HOH B 43 443 18 HOH HOH . P 5 HOH B 44 444 31 HOH HOH . P 5 HOH B 45 445 188 HOH HOH . P 5 HOH B 46 446 254 HOH HOH . P 5 HOH B 47 447 248 HOH HOH . P 5 HOH B 48 448 92 HOH HOH . P 5 HOH B 49 449 180 HOH HOH . P 5 HOH B 50 450 9 HOH HOH . P 5 HOH B 51 451 49 HOH HOH . P 5 HOH B 52 452 120 HOH HOH . P 5 HOH B 53 453 138 HOH HOH . P 5 HOH B 54 454 67 HOH HOH . P 5 HOH B 55 455 93 HOH HOH . P 5 HOH B 56 456 166 HOH HOH . P 5 HOH B 57 457 59 HOH HOH . P 5 HOH B 58 458 214 HOH HOH . P 5 HOH B 59 459 154 HOH HOH . P 5 HOH B 60 460 263 HOH HOH . P 5 HOH B 61 461 175 HOH HOH . P 5 HOH B 62 462 89 HOH HOH . P 5 HOH B 63 463 95 HOH HOH . P 5 HOH B 64 464 267 HOH HOH . P 5 HOH B 65 465 176 HOH HOH . P 5 HOH B 66 466 145 HOH HOH . P 5 HOH B 67 467 73 HOH HOH . P 5 HOH B 68 468 160 HOH HOH . P 5 HOH B 69 469 13 HOH HOH . P 5 HOH B 70 470 246 HOH HOH . P 5 HOH B 71 471 275 HOH HOH . P 5 HOH B 72 472 273 HOH HOH . P 5 HOH B 73 473 193 HOH HOH . P 5 HOH B 74 474 268 HOH HOH . P 5 HOH B 75 475 208 HOH HOH . P 5 HOH B 76 476 136 HOH HOH . P 5 HOH B 77 477 264 HOH HOH . P 5 HOH B 78 478 276 HOH HOH . P 5 HOH B 79 479 223 HOH HOH . P 5 HOH B 80 480 199 HOH HOH . P 5 HOH B 81 481 243 HOH HOH . P 5 HOH B 82 482 274 HOH HOH . Q 5 HOH C 1 401 10 HOH HOH . Q 5 HOH C 2 402 252 HOH HOH . Q 5 HOH C 3 403 195 HOH HOH . Q 5 HOH C 4 404 112 HOH HOH . Q 5 HOH C 5 405 53 HOH HOH . Q 5 HOH C 6 406 55 HOH HOH . Q 5 HOH C 7 407 109 HOH HOH . Q 5 HOH C 8 408 12 HOH HOH . Q 5 HOH C 9 409 209 HOH HOH . Q 5 HOH C 10 410 39 HOH HOH . Q 5 HOH C 11 411 261 HOH HOH . Q 5 HOH C 12 412 35 HOH HOH . Q 5 HOH C 13 413 171 HOH HOH . Q 5 HOH C 14 414 29 HOH HOH . Q 5 HOH C 15 415 34 HOH HOH . Q 5 HOH C 16 416 8 HOH HOH . Q 5 HOH C 17 417 80 HOH HOH . Q 5 HOH C 18 418 239 HOH HOH . Q 5 HOH C 19 419 189 HOH HOH . Q 5 HOH C 20 420 216 HOH HOH . Q 5 HOH C 21 421 110 HOH HOH . Q 5 HOH C 22 422 28 HOH HOH . Q 5 HOH C 23 423 123 HOH HOH . Q 5 HOH C 24 424 258 HOH HOH . Q 5 HOH C 25 425 143 HOH HOH . Q 5 HOH C 26 426 170 HOH HOH . Q 5 HOH C 27 427 40 HOH HOH . Q 5 HOH C 28 428 105 HOH HOH . Q 5 HOH C 29 429 65 HOH HOH . Q 5 HOH C 30 430 22 HOH HOH . Q 5 HOH C 31 431 187 HOH HOH . Q 5 HOH C 32 432 43 HOH HOH . Q 5 HOH C 33 433 32 HOH HOH . Q 5 HOH C 34 434 259 HOH HOH . Q 5 HOH C 35 435 229 HOH HOH . Q 5 HOH C 36 436 190 HOH HOH . Q 5 HOH C 37 437 181 HOH HOH . Q 5 HOH C 38 438 212 HOH HOH . Q 5 HOH C 39 439 117 HOH HOH . Q 5 HOH C 40 440 20 HOH HOH . Q 5 HOH C 41 441 220 HOH HOH . Q 5 HOH C 42 442 121 HOH HOH . Q 5 HOH C 43 443 232 HOH HOH . Q 5 HOH C 44 444 42 HOH HOH . Q 5 HOH C 45 445 76 HOH HOH . Q 5 HOH C 46 446 198 HOH HOH . Q 5 HOH C 47 447 130 HOH HOH . Q 5 HOH C 48 448 231 HOH HOH . Q 5 HOH C 49 449 57 HOH HOH . Q 5 HOH C 50 450 106 HOH HOH . Q 5 HOH C 51 451 107 HOH HOH . Q 5 HOH C 52 452 191 HOH HOH . Q 5 HOH C 53 453 240 HOH HOH . Q 5 HOH C 54 454 151 HOH HOH . Q 5 HOH C 55 455 203 HOH HOH . Q 5 HOH C 56 456 224 HOH HOH . Q 5 HOH C 57 457 48 HOH HOH . Q 5 HOH C 58 458 118 HOH HOH . Q 5 HOH C 59 459 78 HOH HOH . Q 5 HOH C 60 460 186 HOH HOH . Q 5 HOH C 61 461 114 HOH HOH . Q 5 HOH C 62 462 226 HOH HOH . Q 5 HOH C 63 463 185 HOH HOH . Q 5 HOH C 64 464 58 HOH HOH . Q 5 HOH C 65 465 84 HOH HOH . Q 5 HOH C 66 466 155 HOH HOH . Q 5 HOH C 67 467 126 HOH HOH . Q 5 HOH C 68 468 140 HOH HOH . Q 5 HOH C 69 469 132 HOH HOH . Q 5 HOH C 70 470 45 HOH HOH . Q 5 HOH C 71 471 168 HOH HOH . Q 5 HOH C 72 472 100 HOH HOH . Q 5 HOH C 73 473 173 HOH HOH . Q 5 HOH C 74 474 149 HOH HOH . Q 5 HOH C 75 475 152 HOH HOH . Q 5 HOH C 76 476 237 HOH HOH . Q 5 HOH C 77 477 204 HOH HOH . Q 5 HOH C 78 478 102 HOH HOH . Q 5 HOH C 79 479 227 HOH HOH . Q 5 HOH C 80 480 230 HOH HOH . Q 5 HOH C 81 481 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 HEZ . . . J 4 48.164 46.708 7.834 1 40.22 ? O1 HEZ 303 B 1 HETATM 2 C C1 HEZ . . . J 4 46.885 46.103 8.052 1 40.15 ? C1 HEZ 303 B 1 HETATM 3 C C2 HEZ . . . J 4 46.848 45.496 9.441 1 38.19 ? C2 HEZ 303 B 1 HETATM 4 C C3 HEZ . . . J 4 45.424 44.97 9.654 1 38.42 ? C3 HEZ 303 B 1 HETATM 5 C C4 HEZ . . . J 4 45.336 44.284 11.029 1 40.63 ? C4 HEZ 303 B 1 HETATM 6 C C5 HEZ . . . J 4 43.951 43.746 11.33 1 39.18 ? C5 HEZ 303 B 1 HETATM 7 C C6 HEZ . . . J 4 42.857 44.826 11.138 1 41.29 ? C6 HEZ 303 B 1 HETATM 8 O O6 HEZ . . . J 4 42.767 45.594 12.361 1 35.37 ? O6 HEZ 303 B 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #