data_5B2N # _model_server_result.job_id PW74pXT3tydO76-E84emGg _model_server_result.datetime_utc '2024-11-26 21:17:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5b2n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5B2N # _exptl.entry_id 5B2N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 130.4 _cell.angle_gamma 90 _cell.entry_id 5B2N _cell.length_a 101.58 _cell.length_b 49.79 _cell.length_c 75.32 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5B2N _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 242 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 235 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.275 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 389 n n C1 C6 RET sing 390 n n C1 C16 RET sing 391 n n C1 C17 RET sing 392 n n C2 C3 RET sing 393 n n C2 H21 RET sing 394 n n C2 H22 RET sing 395 n n C3 C4 RET sing 396 n n C3 H31 RET sing 397 n n C3 H32 RET sing 398 n n C4 C5 RET sing 399 n n C4 H41 RET sing 400 n n C4 H42 RET sing 401 n n C5 C6 RET doub 402 n n C5 C18 RET sing 403 n n C6 C7 RET sing 404 n n C7 C8 RET doub 405 e n C7 H7 RET sing 406 n n C8 C9 RET sing 407 n n C8 H8 RET sing 408 n n C9 C10 RET doub 409 e n C9 C19 RET sing 410 n n C10 C11 RET sing 411 n n C10 H10 RET sing 412 n n C11 C12 RET doub 413 e n C11 H11 RET sing 414 n n C12 C13 RET sing 415 n n C12 H12 RET sing 416 n n C13 C14 RET doub 417 e n C13 C20 RET sing 418 n n C14 C15 RET sing 419 n n C14 H14 RET sing 420 n n C15 O1 RET doub 421 n n C15 H15 RET sing 422 n n C16 H161 RET sing 423 n n C16 H162 RET sing 424 n n C16 H163 RET sing 425 n n C17 H171 RET sing 426 n n C17 H172 RET sing 427 n n C17 H173 RET sing 428 n n C18 H181 RET sing 429 n n C18 H182 RET sing 430 n n C18 H183 RET sing 431 n n C19 H191 RET sing 432 n n C19 H192 RET sing 433 n n C19 H193 RET sing 434 n n C20 H201 RET sing 435 n n C20 H202 RET sing 436 n n C20 H203 RET sing 437 n n # _atom_sites.entry_id 5B2N _atom_sites.fract_transf_matrix[1][1] 0.009844 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008378 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020084 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017434 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 1 RET RET . C 3 CL A 1 302 1 CL CL . D 4 HEX A 1 303 1 HEX HEX . E 4 HEX A 1 304 2 HEX HEX . F 5 OCT A 1 305 1 OCT OCT . G 5 OCT A 1 306 2 OCT OCT . H 5 OCT A 1 307 3 OCT OCT . I 5 OCT A 1 308 4 OCT OCT . J 6 D12 A 1 309 1 D12 D12 . K 6 D12 A 1 310 2 D12 D12 . L 6 D12 A 1 311 3 D12 D12 . M 7 D10 A 1 312 1 D10 D10 . N 7 D10 A 1 313 2 D10 D10 . O 7 D10 A 1 314 3 D10 D10 . P 8 HOH A 1 401 528 HOH HOH . P 8 HOH A 2 402 530 HOH HOH . P 8 HOH A 3 403 419 HOH HOH . P 8 HOH A 4 404 523 HOH HOH . P 8 HOH A 5 405 405 HOH HOH . P 8 HOH A 6 406 428 HOH HOH . P 8 HOH A 7 407 431 HOH HOH . P 8 HOH A 8 408 452 HOH HOH . P 8 HOH A 9 409 456 HOH HOH . P 8 HOH A 10 410 506 HOH HOH . P 8 HOH A 11 411 518 HOH HOH . P 8 HOH A 12 412 441 HOH HOH . P 8 HOH A 13 413 406 HOH HOH . P 8 HOH A 14 414 503 HOH HOH . P 8 HOH A 15 415 416 HOH HOH . P 8 HOH A 16 416 501 HOH HOH . P 8 HOH A 17 417 507 HOH HOH . P 8 HOH A 18 418 411 HOH HOH . P 8 HOH A 19 419 404 HOH HOH . P 8 HOH A 20 420 512 HOH HOH . P 8 HOH A 21 421 439 HOH HOH . P 8 HOH A 22 422 417 HOH HOH . P 8 HOH A 23 423 504 HOH HOH . P 8 HOH A 24 424 438 HOH HOH . P 8 HOH A 25 425 502 HOH HOH . P 8 HOH A 26 426 447 HOH HOH . P 8 HOH A 27 427 508 HOH HOH . P 8 HOH A 28 428 443 HOH HOH . P 8 HOH A 29 429 533 HOH HOH . P 8 HOH A 30 430 435 HOH HOH . P 8 HOH A 31 431 527 HOH HOH . P 8 HOH A 32 432 407 HOH HOH . P 8 HOH A 33 433 408 HOH HOH . P 8 HOH A 34 434 401 HOH HOH . P 8 HOH A 35 435 450 HOH HOH . P 8 HOH A 36 436 402 HOH HOH . P 8 HOH A 37 437 429 HOH HOH . P 8 HOH A 38 438 410 HOH HOH . P 8 HOH A 39 439 445 HOH HOH . P 8 HOH A 40 440 422 HOH HOH . P 8 HOH A 41 441 510 HOH HOH . P 8 HOH A 42 442 522 HOH HOH . P 8 HOH A 43 443 536 HOH HOH . P 8 HOH A 44 444 427 HOH HOH . P 8 HOH A 45 445 451 HOH HOH . P 8 HOH A 46 446 413 HOH HOH . P 8 HOH A 47 447 535 HOH HOH . P 8 HOH A 48 448 403 HOH HOH . P 8 HOH A 49 449 511 HOH HOH . P 8 HOH A 50 450 425 HOH HOH . P 8 HOH A 51 451 434 HOH HOH . P 8 HOH A 52 452 525 HOH HOH . P 8 HOH A 53 453 534 HOH HOH . P 8 HOH A 54 454 436 HOH HOH . P 8 HOH A 55 455 529 HOH HOH . P 8 HOH A 56 456 538 HOH HOH . P 8 HOH A 57 457 514 HOH HOH . P 8 HOH A 58 458 513 HOH HOH . P 8 HOH A 59 459 420 HOH HOH . P 8 HOH A 60 460 432 HOH HOH . P 8 HOH A 61 461 516 HOH HOH . P 8 HOH A 62 462 437 HOH HOH . P 8 HOH A 63 463 414 HOH HOH . P 8 HOH A 64 464 423 HOH HOH . P 8 HOH A 65 465 430 HOH HOH . P 8 HOH A 66 466 524 HOH HOH . P 8 HOH A 67 467 519 HOH HOH . P 8 HOH A 68 468 442 HOH HOH . P 8 HOH A 69 469 520 HOH HOH . P 8 HOH A 70 470 515 HOH HOH . P 8 HOH A 71 471 505 HOH HOH . P 8 HOH A 72 472 421 HOH HOH . P 8 HOH A 73 473 440 HOH HOH . P 8 HOH A 74 474 412 HOH HOH . P 8 HOH A 75 475 424 HOH HOH . P 8 HOH A 76 476 509 HOH HOH . P 8 HOH A 77 477 517 HOH HOH . P 8 HOH A 78 478 531 HOH HOH . P 8 HOH A 79 479 409 HOH HOH . P 8 HOH A 80 480 532 HOH HOH . P 8 HOH A 81 481 446 HOH HOH . P 8 HOH A 82 482 426 HOH HOH . P 8 HOH A 83 483 433 HOH HOH . P 8 HOH A 84 484 418 HOH HOH . P 8 HOH A 85 485 449 HOH HOH . P 8 HOH A 86 486 521 HOH HOH . P 8 HOH A 87 487 537 HOH HOH . P 8 HOH A 88 488 415 HOH HOH . P 8 HOH A 89 489 453 HOH HOH . P 8 HOH A 90 490 454 HOH HOH . P 8 HOH A 91 491 444 HOH HOH . P 8 HOH A 92 492 526 HOH HOH . P 8 HOH A 93 493 448 HOH HOH . P 8 HOH A 94 494 455 HOH HOH . P 8 HOH A 95 495 540 HOH HOH . P 8 HOH A 96 496 539 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . B 2 30.489 4.323 -5.171 1 14.86 ? C1 RET 301 A 1 HETATM 2 C C2 RET . . . B 2 29.701 3.384 -6.098 1 15.86 ? C2 RET 301 A 1 HETATM 3 C C3 RET . . . B 2 28.208 3.548 -5.955 1 16.49 ? C3 RET 301 A 1 HETATM 4 C C4 RET . . . B 2 27.841 3.062 -4.568 1 15.51 ? C4 RET 301 A 1 HETATM 5 C C5 RET . . . B 2 28.728 3.678 -3.515 1 17.38 ? C5 RET 301 A 1 HETATM 6 C C6 RET . . . B 2 29.864 4.363 -3.764 1 14.49 ? C6 RET 301 A 1 HETATM 7 C C7 RET . . . B 2 30.447 5.212 -2.717 1 14.53 ? C7 RET 301 A 1 HETATM 8 C C8 RET . . . B 2 31.564 6.002 -2.738 1 15.33 ? C8 RET 301 A 1 HETATM 9 C C9 RET . . . B 2 32.016 6.812 -1.623 1 15.43 ? C9 RET 301 A 1 HETATM 10 C C10 RET . . . B 2 33.112 7.59 -1.799 1 15.76 ? C10 RET 301 A 1 HETATM 11 C C11 RET . . . B 2 33.707 8.502 -0.872 1 15.22 ? C11 RET 301 A 1 HETATM 12 C C12 RET . . . B 2 34.732 9.295 -1.316 1 16.18 ? C12 RET 301 A 1 HETATM 13 C C13 RET . . . B 2 35.4 10.306 -0.526 1 18.26 ? C13 RET 301 A 1 HETATM 14 C C14 RET . . . B 2 36.344 11.008 -1.15 1 18.36 ? C14 RET 301 A 1 HETATM 15 C C15 RET . . . B 2 37.113 12.114 -0.493 1 18.92 ? C15 RET 301 A 1 HETATM 16 C C16 RET . . . B 2 31.938 3.874 -5.106 1 15.97 ? C16 RET 301 A 1 HETATM 17 C C17 RET . . . B 2 30.502 5.701 -5.803 1 17.55 ? C17 RET 301 A 1 HETATM 18 C C18 RET . . . B 2 28.015 3.678 -2.182 1 17.06 ? C18 RET 301 A 1 HETATM 19 C C19 RET . . . B 2 31.253 6.804 -0.322 1 15.02 ? C19 RET 301 A 1 HETATM 20 C C20 RET . . . B 2 34.972 10.566 0.91 1 16.59 ? C20 RET 301 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #