data_5B2N
#
_model_server_result.job_id            WegKMYbjUWNc-NGSRC4OBQ 
_model_server_result.datetime_utc      '2024-11-14 17:52:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5b2n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":309}' 
#
_entry.id    5B2N 
#
_exptl.entry_id    5B2N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              170.335 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DODECANE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          130.4 
_cell.angle_gamma         90 
_cell.entry_id            5B2N 
_cell.length_a            101.58 
_cell.length_b            49.79 
_cell.length_c            75.32 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5B2N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 J N N 
? 6 K N N 
? 6 L N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             242 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              235 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            C15 
_struct_conn.ptnr2_label_comp_id            RET 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             RET 
_struct_conn.ptnr2_auth_seq_id              301 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.275 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C12 H26' 
_chem_comp.formula_weight    170.335 
_chem_comp.id                D12 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DODECANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 D12 sing 114 n n 
C1 H11 D12 sing 115 n n 
C1 H12 D12 sing 116 n n 
C1 H13 D12 sing 117 n n 
C2 C3 D12 sing 118 n n 
C2 H21 D12 sing 119 n n 
C2 H22 D12 sing 120 n n 
C3 C4 D12 sing 121 n n 
C3 H31 D12 sing 122 n n 
C3 H32 D12 sing 123 n n 
C4 C5 D12 sing 124 n n 
C4 H41 D12 sing 125 n n 
C4 H42 D12 sing 126 n n 
C5 C6 D12 sing 127 n n 
C5 H51 D12 sing 128 n n 
C5 H52 D12 sing 129 n n 
C6 C7 D12 sing 130 n n 
C6 H61 D12 sing 131 n n 
C6 H62 D12 sing 132 n n 
C7 C8 D12 sing 133 n n 
C7 H71 D12 sing 134 n n 
C7 H72 D12 sing 135 n n 
C8 C9 D12 sing 136 n n 
C8 H81 D12 sing 137 n n 
C8 H82 D12 sing 138 n n 
C9 C10 D12 sing 139 n n 
C9 H91 D12 sing 140 n n 
C9 H92 D12 sing 141 n n 
C10 C11 D12 sing 142 n n 
C10 H101 D12 sing 143 n n 
C10 H102 D12 sing 144 n n 
C11 C12 D12 sing 145 n n 
C11 H111 D12 sing 146 n n 
C11 H112 D12 sing 147 n n 
C12 H121 D12 sing 148 n n 
C12 H122 D12 sing 149 n n 
C12 H123 D12 sing 150 n n 
#
_atom_sites.entry_id                     5B2N 
_atom_sites.fract_transf_matrix[1][1]    0.009844 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.008378 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020084 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017434 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RET A 1 301 1 RET RET . 
C 3 CL A 1 302 1 CL CL . 
D 4 HEX A 1 303 1 HEX HEX . 
E 4 HEX A 1 304 2 HEX HEX . 
F 5 OCT A 1 305 1 OCT OCT . 
G 5 OCT A 1 306 2 OCT OCT . 
H 5 OCT A 1 307 3 OCT OCT . 
I 5 OCT A 1 308 4 OCT OCT . 
J 6 D12 A 1 309 1 D12 D12 . 
K 6 D12 A 1 310 2 D12 D12 . 
L 6 D12 A 1 311 3 D12 D12 . 
M 7 D10 A 1 312 1 D10 D10 . 
N 7 D10 A 1 313 2 D10 D10 . 
O 7 D10 A 1 314 3 D10 D10 . 
P 8 HOH A 1 401 528 HOH HOH . 
P 8 HOH A 2 402 530 HOH HOH . 
P 8 HOH A 3 403 419 HOH HOH . 
P 8 HOH A 4 404 523 HOH HOH . 
P 8 HOH A 5 405 405 HOH HOH . 
P 8 HOH A 6 406 428 HOH HOH . 
P 8 HOH A 7 407 431 HOH HOH . 
P 8 HOH A 8 408 452 HOH HOH . 
P 8 HOH A 9 409 456 HOH HOH . 
P 8 HOH A 10 410 506 HOH HOH . 
P 8 HOH A 11 411 518 HOH HOH . 
P 8 HOH A 12 412 441 HOH HOH . 
P 8 HOH A 13 413 406 HOH HOH . 
P 8 HOH A 14 414 503 HOH HOH . 
P 8 HOH A 15 415 416 HOH HOH . 
P 8 HOH A 16 416 501 HOH HOH . 
P 8 HOH A 17 417 507 HOH HOH . 
P 8 HOH A 18 418 411 HOH HOH . 
P 8 HOH A 19 419 404 HOH HOH . 
P 8 HOH A 20 420 512 HOH HOH . 
P 8 HOH A 21 421 439 HOH HOH . 
P 8 HOH A 22 422 417 HOH HOH . 
P 8 HOH A 23 423 504 HOH HOH . 
P 8 HOH A 24 424 438 HOH HOH . 
P 8 HOH A 25 425 502 HOH HOH . 
P 8 HOH A 26 426 447 HOH HOH . 
P 8 HOH A 27 427 508 HOH HOH . 
P 8 HOH A 28 428 443 HOH HOH . 
P 8 HOH A 29 429 533 HOH HOH . 
P 8 HOH A 30 430 435 HOH HOH . 
P 8 HOH A 31 431 527 HOH HOH . 
P 8 HOH A 32 432 407 HOH HOH . 
P 8 HOH A 33 433 408 HOH HOH . 
P 8 HOH A 34 434 401 HOH HOH . 
P 8 HOH A 35 435 450 HOH HOH . 
P 8 HOH A 36 436 402 HOH HOH . 
P 8 HOH A 37 437 429 HOH HOH . 
P 8 HOH A 38 438 410 HOH HOH . 
P 8 HOH A 39 439 445 HOH HOH . 
P 8 HOH A 40 440 422 HOH HOH . 
P 8 HOH A 41 441 510 HOH HOH . 
P 8 HOH A 42 442 522 HOH HOH . 
P 8 HOH A 43 443 536 HOH HOH . 
P 8 HOH A 44 444 427 HOH HOH . 
P 8 HOH A 45 445 451 HOH HOH . 
P 8 HOH A 46 446 413 HOH HOH . 
P 8 HOH A 47 447 535 HOH HOH . 
P 8 HOH A 48 448 403 HOH HOH . 
P 8 HOH A 49 449 511 HOH HOH . 
P 8 HOH A 50 450 425 HOH HOH . 
P 8 HOH A 51 451 434 HOH HOH . 
P 8 HOH A 52 452 525 HOH HOH . 
P 8 HOH A 53 453 534 HOH HOH . 
P 8 HOH A 54 454 436 HOH HOH . 
P 8 HOH A 55 455 529 HOH HOH . 
P 8 HOH A 56 456 538 HOH HOH . 
P 8 HOH A 57 457 514 HOH HOH . 
P 8 HOH A 58 458 513 HOH HOH . 
P 8 HOH A 59 459 420 HOH HOH . 
P 8 HOH A 60 460 432 HOH HOH . 
P 8 HOH A 61 461 516 HOH HOH . 
P 8 HOH A 62 462 437 HOH HOH . 
P 8 HOH A 63 463 414 HOH HOH . 
P 8 HOH A 64 464 423 HOH HOH . 
P 8 HOH A 65 465 430 HOH HOH . 
P 8 HOH A 66 466 524 HOH HOH . 
P 8 HOH A 67 467 519 HOH HOH . 
P 8 HOH A 68 468 442 HOH HOH . 
P 8 HOH A 69 469 520 HOH HOH . 
P 8 HOH A 70 470 515 HOH HOH . 
P 8 HOH A 71 471 505 HOH HOH . 
P 8 HOH A 72 472 421 HOH HOH . 
P 8 HOH A 73 473 440 HOH HOH . 
P 8 HOH A 74 474 412 HOH HOH . 
P 8 HOH A 75 475 424 HOH HOH . 
P 8 HOH A 76 476 509 HOH HOH . 
P 8 HOH A 77 477 517 HOH HOH . 
P 8 HOH A 78 478 531 HOH HOH . 
P 8 HOH A 79 479 409 HOH HOH . 
P 8 HOH A 80 480 532 HOH HOH . 
P 8 HOH A 81 481 446 HOH HOH . 
P 8 HOH A 82 482 426 HOH HOH . 
P 8 HOH A 83 483 433 HOH HOH . 
P 8 HOH A 84 484 418 HOH HOH . 
P 8 HOH A 85 485 449 HOH HOH . 
P 8 HOH A 86 486 521 HOH HOH . 
P 8 HOH A 87 487 537 HOH HOH . 
P 8 HOH A 88 488 415 HOH HOH . 
P 8 HOH A 89 489 453 HOH HOH . 
P 8 HOH A 90 490 454 HOH HOH . 
P 8 HOH A 91 491 444 HOH HOH . 
P 8 HOH A 92 492 526 HOH HOH . 
P 8 HOH A 93 493 448 HOH HOH . 
P 8 HOH A 94 494 455 HOH HOH . 
P 8 HOH A 95 495 540 HOH HOH . 
P 8 HOH A 96 496 539 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 D12 . . . J 6 18.962 15.511 4.522 1 44.16 ? C1 D12 309 A 1 
HETATM 2 C C2 D12 . . . J 6 19.288 15.709 5.988 1 44.21 ? C2 D12 309 A 1 
HETATM 3 C C3 D12 . . . J 6 20.681 15.194 6.292 1 43.7 ? C3 D12 309 A 1 
HETATM 4 C C4 D12 . . . J 6 21.192 15.849 7.558 1 42.99 ? C4 D12 309 A 1 
HETATM 5 C C5 D12 . . . J 6 22.371 15.075 8.107 1 40.96 ? C5 D12 309 A 1 
HETATM 6 C C6 D12 . . . J 6 23.319 16.016 8.823 1 39.8 ? C6 D12 309 A 1 
HETATM 7 C C7 D12 . . . J 6 22.565 16.831 9.852 1 39.91 ? C7 D12 309 A 1 
HETATM 8 C C8 D12 . . . J 6 23.329 16.869 11.161 1 40.16 ? C8 D12 309 A 1 
HETATM 9 C C9 D12 . . . J 6 22.505 16.181 12.226 1 39.19 ? C9 D12 309 A 1 
HETATM 10 C C10 D12 . . . J 6 23.181 16.283 13.578 1 39.46 ? C10 D12 309 A 1 
HETATM 11 C C11 D12 . . . J 6 22.29 15.632 14.612 1 38.19 ? C11 D12 309 A 1 
HETATM 12 C C12 D12 . . . J 6 22.998 15.577 15.946 1 37.41 ? C12 D12 309 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           345 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           12 
#