data_5B30 # _model_server_result.job_id avApzk2Py0HAWf3O3mlAGQ _model_server_result.datetime_utc '2024-11-05 03:41:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5b30 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5B30 # _exptl.entry_id 5B30 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5B30 _cell.length_a 91.791 _cell.length_b 91.791 _cell.length_c 121.417 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5B30 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 22 A SER 17 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc2 A O ARG 107 A ARG 102 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc3 A O ARG 107 A ARG 102 1_555 E CA CA . A CA 204 16_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc4 A OD2 ASP 110 A ASP 105 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc5 A OD1 ASP 110 A ASP 105 1_555 E CA CA . A CA 204 16_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc6 A OD2 ASP 110 A ASP 105 1_555 E CA CA . A CA 204 16_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.907 ? metalc ? metalc7 A O ASP 112 A ASP 107 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc8 A O TYR 142 A TYR 137 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc9 B O2G GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc10 B O2B GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc11 C MG MG . A MG 202 1_555 G O HOH . A HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc12 C MG MG . A MG 202 1_555 G O HOH . A HOH 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc13 C MG MG . A MG 202 1_555 G O HOH . A HOH 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc14 D CA CA . A CA 203 1_555 G O HOH . A HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc15 D CA CA . A CA 203 1_555 G O HOH . A HOH 327 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc16 D CA CA . A CA 203 1_555 G O HOH . A HOH 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc17 D CA CA . A CA 203 1_555 G O HOH . A HOH 368 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc18 D CA CA . A CA 203 1_555 G O HOH . A HOH 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc19 D CA CA . A CA 203 1_555 G O HOH . A HOH 399 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc20 E CA CA . A CA 204 1_555 G O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc21 E CA CA . A CA 204 1_555 G O HOH . A HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc22 E CA CA . A CA 204 1_555 G O HOH . A HOH 426 16_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc23 F NA NA . A NA 205 1_555 G O HOH . A HOH 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc24 F NA NA . A NA 205 1_555 G O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5B30 _atom_sites.fract_transf_matrix[1][1] 0.010894 _atom_sites.fract_transf_matrix[1][2] 0.00629 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01258 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008236 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 201 201 GNP GNP . C 3 MG A 1 202 202 MG MG . D 4 CA A 1 203 203 CA CA . E 4 CA A 1 204 204 CA CA . F 5 NA A 1 205 205 NA NA . G 6 HOH A 1 301 302 HOH HOH . G 6 HOH A 2 302 301 HOH HOH . G 6 HOH A 3 303 303 HOH HOH . G 6 HOH A 4 304 304 HOH HOH . G 6 HOH A 5 305 305 HOH HOH . G 6 HOH A 6 306 307 HOH HOH . G 6 HOH A 7 307 383 HOH HOH . G 6 HOH A 8 308 308 HOH HOH . G 6 HOH A 9 309 306 HOH HOH . G 6 HOH A 10 310 309 HOH HOH . G 6 HOH A 11 311 310 HOH HOH . G 6 HOH A 12 312 312 HOH HOH . G 6 HOH A 13 313 316 HOH HOH . G 6 HOH A 14 314 311 HOH HOH . G 6 HOH A 15 315 319 HOH HOH . G 6 HOH A 16 316 315 HOH HOH . G 6 HOH A 17 317 321 HOH HOH . G 6 HOH A 18 318 322 HOH HOH . G 6 HOH A 19 319 317 HOH HOH . G 6 HOH A 20 320 320 HOH HOH . G 6 HOH A 21 321 323 HOH HOH . G 6 HOH A 22 322 327 HOH HOH . G 6 HOH A 23 323 324 HOH HOH . G 6 HOH A 24 324 328 HOH HOH . G 6 HOH A 25 325 318 HOH HOH . G 6 HOH A 26 326 314 HOH HOH . G 6 HOH A 27 327 325 HOH HOH . G 6 HOH A 28 328 326 HOH HOH . G 6 HOH A 29 329 329 HOH HOH . G 6 HOH A 30 330 330 HOH HOH . G 6 HOH A 31 331 331 HOH HOH . G 6 HOH A 32 332 332 HOH HOH . G 6 HOH A 33 333 333 HOH HOH . G 6 HOH A 34 334 337 HOH HOH . G 6 HOH A 35 335 335 HOH HOH . G 6 HOH A 36 336 340 HOH HOH . G 6 HOH A 37 337 341 HOH HOH . G 6 HOH A 38 338 345 HOH HOH . G 6 HOH A 39 339 343 HOH HOH . G 6 HOH A 40 340 338 HOH HOH . G 6 HOH A 41 341 334 HOH HOH . G 6 HOH A 42 342 348 HOH HOH . G 6 HOH A 43 343 342 HOH HOH . G 6 HOH A 44 344 352 HOH HOH . G 6 HOH A 45 345 347 HOH HOH . G 6 HOH A 46 346 344 HOH HOH . G 6 HOH A 47 347 354 HOH HOH . G 6 HOH A 48 348 350 HOH HOH . G 6 HOH A 49 349 339 HOH HOH . G 6 HOH A 50 350 349 HOH HOH . G 6 HOH A 51 351 364 HOH HOH . G 6 HOH A 52 352 353 HOH HOH . G 6 HOH A 53 353 351 HOH HOH . G 6 HOH A 54 354 355 HOH HOH . G 6 HOH A 55 355 358 HOH HOH . G 6 HOH A 56 356 362 HOH HOH . G 6 HOH A 57 357 373 HOH HOH . G 6 HOH A 58 358 356 HOH HOH . G 6 HOH A 59 359 374 HOH HOH . G 6 HOH A 60 360 357 HOH HOH . G 6 HOH A 61 361 367 HOH HOH . G 6 HOH A 62 362 360 HOH HOH . G 6 HOH A 63 363 346 HOH HOH . G 6 HOH A 64 364 369 HOH HOH . G 6 HOH A 65 365 366 HOH HOH . G 6 HOH A 66 366 359 HOH HOH . G 6 HOH A 67 367 363 HOH HOH . G 6 HOH A 68 368 382 HOH HOH . G 6 HOH A 69 369 372 HOH HOH . G 6 HOH A 70 370 380 HOH HOH . G 6 HOH A 71 371 368 HOH HOH . G 6 HOH A 72 372 375 HOH HOH . G 6 HOH A 73 373 379 HOH HOH . G 6 HOH A 74 374 376 HOH HOH . G 6 HOH A 75 375 377 HOH HOH . G 6 HOH A 76 376 371 HOH HOH . G 6 HOH A 77 377 381 HOH HOH . G 6 HOH A 78 378 370 HOH HOH . G 6 HOH A 79 379 385 HOH HOH . G 6 HOH A 80 380 365 HOH HOH . G 6 HOH A 81 381 387 HOH HOH . G 6 HOH A 82 382 378 HOH HOH . G 6 HOH A 83 383 391 HOH HOH . G 6 HOH A 84 384 386 HOH HOH . G 6 HOH A 85 385 390 HOH HOH . G 6 HOH A 86 386 392 HOH HOH . G 6 HOH A 87 387 394 HOH HOH . G 6 HOH A 88 388 384 HOH HOH . G 6 HOH A 89 389 388 HOH HOH . G 6 HOH A 90 390 389 HOH HOH . G 6 HOH A 91 391 397 HOH HOH . G 6 HOH A 92 392 393 HOH HOH . G 6 HOH A 93 393 404 HOH HOH . G 6 HOH A 94 394 424 HOH HOH . G 6 HOH A 95 395 395 HOH HOH . G 6 HOH A 96 396 399 HOH HOH . G 6 HOH A 97 397 406 HOH HOH . G 6 HOH A 98 398 396 HOH HOH . G 6 HOH A 99 399 398 HOH HOH . G 6 HOH A 100 400 400 HOH HOH . G 6 HOH A 101 401 407 HOH HOH . G 6 HOH A 102 402 408 HOH HOH . G 6 HOH A 103 403 361 HOH HOH . G 6 HOH A 104 404 402 HOH HOH . G 6 HOH A 105 405 411 HOH HOH . G 6 HOH A 106 406 446 HOH HOH . G 6 HOH A 107 407 413 HOH HOH . G 6 HOH A 108 408 410 HOH HOH . G 6 HOH A 109 409 412 HOH HOH . G 6 HOH A 110 410 403 HOH HOH . G 6 HOH A 111 411 409 HOH HOH . G 6 HOH A 112 412 405 HOH HOH . G 6 HOH A 113 413 420 HOH HOH . G 6 HOH A 114 414 415 HOH HOH . G 6 HOH A 115 415 414 HOH HOH . G 6 HOH A 116 416 417 HOH HOH . G 6 HOH A 117 417 418 HOH HOH . G 6 HOH A 118 418 422 HOH HOH . G 6 HOH A 119 419 427 HOH HOH . G 6 HOH A 120 420 419 HOH HOH . G 6 HOH A 121 421 421 HOH HOH . G 6 HOH A 122 422 416 HOH HOH . G 6 HOH A 123 423 423 HOH HOH . G 6 HOH A 124 424 428 HOH HOH . G 6 HOH A 125 425 426 HOH HOH . G 6 HOH A 126 426 401 HOH HOH . G 6 HOH A 127 427 425 HOH HOH . G 6 HOH A 128 428 429 HOH HOH . G 6 HOH A 129 429 432 HOH HOH . G 6 HOH A 130 430 430 HOH HOH . G 6 HOH A 131 431 437 HOH HOH . G 6 HOH A 132 432 435 HOH HOH . G 6 HOH A 133 433 436 HOH HOH . G 6 HOH A 134 434 431 HOH HOH . G 6 HOH A 135 435 433 HOH HOH . G 6 HOH A 136 436 434 HOH HOH . G 6 HOH A 137 437 440 HOH HOH . G 6 HOH A 138 438 439 HOH HOH . G 6 HOH A 139 439 444 HOH HOH . G 6 HOH A 140 440 442 HOH HOH . G 6 HOH A 141 441 443 HOH HOH . G 6 HOH A 142 442 441 HOH HOH . G 6 HOH A 143 443 445 HOH HOH . G 6 HOH A 144 444 447 HOH HOH . G 6 HOH A 145 445 448 HOH HOH . G 6 HOH A 146 446 450 HOH HOH . G 6 HOH A 147 447 451 HOH HOH . G 6 HOH A 148 448 449 HOH HOH . G 6 HOH A 149 449 453 HOH HOH . G 6 HOH A 150 450 452 HOH HOH . G 6 HOH A 151 451 458 HOH HOH . G 6 HOH A 152 452 457 HOH HOH . G 6 HOH A 153 453 456 HOH HOH . G 6 HOH A 154 454 455 HOH HOH . G 6 HOH A 155 455 454 HOH HOH . G 6 HOH A 156 456 460 HOH HOH . G 6 HOH A 157 457 461 HOH HOH . G 6 HOH A 158 458 462 HOH HOH . G 6 HOH A 159 459 459 HOH HOH . G 6 HOH A 160 460 463 HOH HOH . G 6 HOH A 161 461 465 HOH HOH . G 6 HOH A 162 462 464 HOH HOH . G 6 HOH A 163 463 466 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -0.026 _atom_site.Cartn_y -0.102 _atom_site.Cartn_z -37.938 _atom_site.occupancy 0.33 _atom_site.B_iso_or_equiv 16.87 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #