data_5B34 # _model_server_result.job_id TJaj1ecKV4GjTtChBL89ew _model_server_result.datetime_utc '2024-11-23 04:28:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5b34 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5B34 # _exptl.entry_id 5B34 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 685.031 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2,4,6-tris(iodanyl)-5-(octanoylamino)benzene-1,3-dicarboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5B34 _cell.length_a 46.2 _cell.length_b 103 _cell.length_c 128.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5B34 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.298 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C16 H18 I3 N O5' _chem_comp.formula_weight 685.031 _chem_comp.id 4QL _chem_comp.mon_nstd_flag . _chem_comp.name '2,4,6-tris(iodanyl)-5-(octanoylamino)benzene-1,3-dicarboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 C23 4QL sing 1 n n C23 C22 4QL sing 2 n n C22 C21 4QL sing 3 n n C21 C20 4QL sing 4 n n C20 C19 4QL sing 5 n n C19 C18 4QL sing 6 n n C18 C17 4QL sing 7 n n C17 O25 4QL doub 8 n n C17 N13 4QL sing 9 n n I2 C4 4QL sing 10 n n N13 C5 4QL sing 11 n n C5 C4 4QL doub 12 n y C5 C6 4QL sing 13 n y C4 C3 4QL sing 14 n y I3 C6 4QL sing 15 n n C6 C1 4QL doub 16 n y C3 C10 4QL sing 17 n n C3 C2 4QL doub 18 n y O12 C10 4QL doub 19 n n C10 O11 4QL sing 20 n n C1 C2 4QL sing 21 n y C1 C7 4QL sing 22 n n C2 I1 4QL sing 23 n n C7 O8 4QL doub 24 n n C7 O9 4QL sing 25 n n C18 H1 4QL sing 26 n n C18 H2 4QL sing 27 n n C19 H3 4QL sing 28 n n C19 H4 4QL sing 29 n n C20 H5 4QL sing 30 n n C20 H6 4QL sing 31 n n C21 H7 4QL sing 32 n n C21 H8 4QL sing 33 n n C22 H9 4QL sing 34 n n C22 H10 4QL sing 35 n n C23 H11 4QL sing 36 n n C23 H12 4QL sing 37 n n C24 H13 4QL sing 38 n n C24 H14 4QL sing 39 n n C24 H15 4QL sing 40 n n N13 H16 4QL sing 41 n n O11 H17 4QL sing 42 n n O9 H18 4QL sing 43 n n # _atom_sites.entry_id 5B34 _atom_sites.fract_transf_matrix[1][1] 0.021645 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009709 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00777 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 300 RET RET . C 3 4QL A 1 302 1 4QL 13a . D 3 4QL A 1 303 2 4QL 13a . E 4 OCT A 1 304 100 OCT OCT . F 4 OCT A 1 305 200 OCT OCT . G 5 D12 A 1 306 402 D12 D12 . H 6 D10 A 1 307 406 D10 D10 . I 6 D10 A 1 308 407 D10 D10 . J 7 R16 A 1 309 411 R16 R16 . K 6 D10 A 1 310 250 D10 D10 . L 8 HP6 A 1 311 401 HP6 HP6 . M 8 HP6 A 1 312 251 HP6 HP6 . N 8 HP6 A 1 313 252 HP6 HP6 . O 9 DD9 A 1 314 253 DD9 DD9 . P 5 D12 A 1 315 254 D12 D12 . Q 5 D12 A 1 316 255 D12 D12 . R 5 D12 A 1 317 256 D12 D12 . S 9 DD9 A 1 318 257 DD9 DD9 . T 10 HOH A 1 401 533 HOH HOH . T 10 HOH A 2 402 405 HOH HOH . T 10 HOH A 3 403 423 HOH HOH . T 10 HOH A 4 404 402 HOH HOH . T 10 HOH A 5 405 403 HOH HOH . T 10 HOH A 6 406 537 HOH HOH . T 10 HOH A 7 407 530 HOH HOH . T 10 HOH A 8 408 400 HOH HOH . T 10 HOH A 9 409 545 HOH HOH . T 10 HOH A 10 410 401 HOH HOH . T 10 HOH A 11 411 527 HOH HOH . T 10 HOH A 12 412 526 HOH HOH . T 10 HOH A 13 413 418 HOH HOH . T 10 HOH A 14 414 547 HOH HOH . T 10 HOH A 15 415 532 HOH HOH . T 10 HOH A 16 416 536 HOH HOH . T 10 HOH A 17 417 419 HOH HOH . T 10 HOH A 18 418 501 HOH HOH . T 10 HOH A 19 419 406 HOH HOH . T 10 HOH A 20 420 521 HOH HOH . T 10 HOH A 21 421 529 HOH HOH . T 10 HOH A 22 422 514 HOH HOH . T 10 HOH A 23 423 531 HOH HOH . T 10 HOH A 24 424 404 HOH HOH . T 10 HOH A 25 425 543 HOH HOH . T 10 HOH A 26 426 522 HOH HOH . T 10 HOH A 27 427 523 HOH HOH . T 10 HOH A 28 428 535 HOH HOH . T 10 HOH A 29 429 541 HOH HOH . T 10 HOH A 30 430 433 HOH HOH . T 10 HOH A 31 431 429 HOH HOH . T 10 HOH A 32 432 542 HOH HOH . T 10 HOH A 33 433 539 HOH HOH . T 10 HOH A 34 434 546 HOH HOH . T 10 HOH A 35 435 540 HOH HOH . T 10 HOH A 36 436 528 HOH HOH . T 10 HOH A 37 437 524 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O25 4QL . A . C 3 16.483 55.753 16.724 0.6 69.43 ? O25 4QL 302 A 1 HETATM 2 C C17 4QL . A . C 3 15.286 55.691 16.445 0.6 73.38 ? C17 4QL 302 A 1 HETATM 3 C C18 4QL . A . C 3 14.769 56.573 15.31 0.6 76.6 ? C18 4QL 302 A 1 HETATM 4 C C19 4QL . A . C 3 15.546 56.37 14.019 0.6 76.07 ? C19 4QL 302 A 1 HETATM 5 C C20 4QL . A . C 3 14.829 55.443 13.046 0.6 76.72 ? C20 4QL 302 A 1 HETATM 6 C C21 4QL . A . C 3 15.622 55.303 11.755 0.6 72.27 ? C21 4QL 302 A 1 HETATM 7 C C22 4QL . A . C 3 14.748 55.228 10.506 0.6 79.4 ? C22 4QL 302 A 1 HETATM 8 C C23 4QL . A . C 3 14.882 56.389 9.522 0.6 74.28 ? C23 4QL 302 A 1 HETATM 9 C C24 4QL . A . C 3 14.315 56.022 8.166 0.6 79.62 ? C24 4QL 302 A 1 HETATM 10 N N13 4QL . A . C 3 14.322 54.955 17.045 0.6 64.44 ? N13 4QL 302 A 1 HETATM 11 C C5 4QL . A . C 3 14.582 54.345 18.239 0.6 74.22 ? C5 4QL 302 A 1 HETATM 12 C C6 4QL . A . C 3 14.166 55.032 19.369 0.6 87.46 ? C6 4QL 302 A 1 HETATM 13 I I3 4QL . A . C 3 12.891 56.65 19.145 0.6 85.99 ? I3 4QL 302 A 1 HETATM 14 C C4 4QL . A . C 3 15.473 53.296 18.441 0.6 81.05 ? C4 4QL 302 A 1 HETATM 15 I I2 4QL . A . C 3 16.226 52.235 16.826 0.6 75 ? I2 4QL 302 A 1 HETATM 16 C C3 4QL . A . C 3 15.876 52.915 19.707 0.6 79.08 ? C3 4QL 302 A 1 HETATM 17 C C10 4QL . A . C 3 16.757 51.711 19.879 0.6 80.99 ? C10 4QL 302 A 1 HETATM 18 O O12 4QL . A . C 3 16.135 50.627 19.829 0.6 77.91 ? O12 4QL 302 A 1 HETATM 19 O O11 4QL . A . C 3 17.989 51.755 20.083 0.6 89.28 ? O11 4QL 302 A 1 HETATM 20 C C2 4QL . A . C 3 15.393 53.595 20.808 0.6 95.08 ? C2 4QL 302 A 1 HETATM 21 I I1 4QL . A . C 3 15.979 52.978 22.718 0.6 114.34 ? I1 4QL 302 A 1 HETATM 22 C C1 4QL . A . C 3 14.538 54.674 20.631 0.6 93.03 ? C1 4QL 302 A 1 HETATM 23 C C7 4QL . A . C 3 13.968 55.462 21.754 0.6 94.41 ? C7 4QL 302 A 1 HETATM 24 O O8 4QL . A . C 3 12.74 55.393 21.945 0.6 105.29 ? O8 4QL 302 A 1 HETATM 25 O O9 4QL . A . C 3 14.713 56.168 22.446 0.6 100.06 ? O9 4QL 302 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 25 #