data_5B34 # _model_server_result.job_id 4zLAYtU85VYR_m1TF62XGQ _model_server_result.datetime_utc '2024-11-23 04:11:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5b34 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":318}' # _entry.id 5B34 # _exptl.entry_id 5B34 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 128.255 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description nonane _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5B34 _cell.length_a 46.2 _cell.length_b 103 _cell.length_c 128.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5B34 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 O N N ? 9 S N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.298 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C9 H20' _chem_comp.formula_weight 128.255 _chem_comp.id DD9 _chem_comp.mon_nstd_flag . _chem_comp.name nonane _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 DD9 sing 181 n n C1 H1 DD9 sing 182 n n C1 H1A DD9 sing 183 n n C1 H1B DD9 sing 184 n n C3 C2 DD9 sing 185 n n C2 H2 DD9 sing 186 n n C2 H2A DD9 sing 187 n n C4 C3 DD9 sing 188 n n C3 H3 DD9 sing 189 n n C3 H3A DD9 sing 190 n n C5 C4 DD9 sing 191 n n C4 H4 DD9 sing 192 n n C4 H4A DD9 sing 193 n n C6 C5 DD9 sing 194 n n C5 H5 DD9 sing 195 n n C5 H5A DD9 sing 196 n n C7 C6 DD9 sing 197 n n C6 H6 DD9 sing 198 n n C6 H6A DD9 sing 199 n n C8 C7 DD9 sing 200 n n C7 H7 DD9 sing 201 n n C7 H7A DD9 sing 202 n n C9 C8 DD9 sing 203 n n C8 H8 DD9 sing 204 n n C8 H8A DD9 sing 205 n n C9 H9 DD9 sing 206 n n C9 H9A DD9 sing 207 n n C9 H9B DD9 sing 208 n n # _atom_sites.entry_id 5B34 _atom_sites.fract_transf_matrix[1][1] 0.021645 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009709 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00777 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 300 RET RET . C 3 4QL A 1 302 1 4QL 13a . D 3 4QL A 1 303 2 4QL 13a . E 4 OCT A 1 304 100 OCT OCT . F 4 OCT A 1 305 200 OCT OCT . G 5 D12 A 1 306 402 D12 D12 . H 6 D10 A 1 307 406 D10 D10 . I 6 D10 A 1 308 407 D10 D10 . J 7 R16 A 1 309 411 R16 R16 . K 6 D10 A 1 310 250 D10 D10 . L 8 HP6 A 1 311 401 HP6 HP6 . M 8 HP6 A 1 312 251 HP6 HP6 . N 8 HP6 A 1 313 252 HP6 HP6 . O 9 DD9 A 1 314 253 DD9 DD9 . P 5 D12 A 1 315 254 D12 D12 . Q 5 D12 A 1 316 255 D12 D12 . R 5 D12 A 1 317 256 D12 D12 . S 9 DD9 A 1 318 257 DD9 DD9 . T 10 HOH A 1 401 533 HOH HOH . T 10 HOH A 2 402 405 HOH HOH . T 10 HOH A 3 403 423 HOH HOH . T 10 HOH A 4 404 402 HOH HOH . T 10 HOH A 5 405 403 HOH HOH . T 10 HOH A 6 406 537 HOH HOH . T 10 HOH A 7 407 530 HOH HOH . T 10 HOH A 8 408 400 HOH HOH . T 10 HOH A 9 409 545 HOH HOH . T 10 HOH A 10 410 401 HOH HOH . T 10 HOH A 11 411 527 HOH HOH . T 10 HOH A 12 412 526 HOH HOH . T 10 HOH A 13 413 418 HOH HOH . T 10 HOH A 14 414 547 HOH HOH . T 10 HOH A 15 415 532 HOH HOH . T 10 HOH A 16 416 536 HOH HOH . T 10 HOH A 17 417 419 HOH HOH . T 10 HOH A 18 418 501 HOH HOH . T 10 HOH A 19 419 406 HOH HOH . T 10 HOH A 20 420 521 HOH HOH . T 10 HOH A 21 421 529 HOH HOH . T 10 HOH A 22 422 514 HOH HOH . T 10 HOH A 23 423 531 HOH HOH . T 10 HOH A 24 424 404 HOH HOH . T 10 HOH A 25 425 543 HOH HOH . T 10 HOH A 26 426 522 HOH HOH . T 10 HOH A 27 427 523 HOH HOH . T 10 HOH A 28 428 535 HOH HOH . T 10 HOH A 29 429 541 HOH HOH . T 10 HOH A 30 430 433 HOH HOH . T 10 HOH A 31 431 429 HOH HOH . T 10 HOH A 32 432 542 HOH HOH . T 10 HOH A 33 433 539 HOH HOH . T 10 HOH A 34 434 546 HOH HOH . T 10 HOH A 35 435 540 HOH HOH . T 10 HOH A 36 436 528 HOH HOH . T 10 HOH A 37 437 524 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DD9 . . . S 9 4.205 73.068 8.325 1 100.82 ? C1 DD9 318 A 1 HETATM 2 C C2 DD9 . . . S 9 5.082 71.88 8.722 1 103.53 ? C2 DD9 318 A 1 HETATM 3 C C3 DD9 . . . S 9 6.019 71.508 7.57 1 106.89 ? C3 DD9 318 A 1 HETATM 4 C C4 DD9 . . . S 9 6.799 70.229 7.83 1 111.52 ? C4 DD9 318 A 1 HETATM 5 C C5 DD9 . . . S 9 6.827 69.238 6.638 1 115.97 ? C5 DD9 318 A 1 HETATM 6 C C6 DD9 . . . S 9 6.66 67.767 7.073 1 120.03 ? C6 DD9 318 A 1 HETATM 7 C C7 DD9 . . . S 9 7.683 66.775 6.503 1 119.88 ? C7 DD9 318 A 1 HETATM 8 C C8 DD9 . . . S 9 7.696 65.456 7.294 1 114.17 ? C8 DD9 318 A 1 HETATM 9 C C9 DD9 . . . S 9 8.819 64.516 6.876 1 108.45 ? C9 DD9 318 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 9 #