data_5B35 # _model_server_result.job_id ZKZD0O7ON64Ym4j5uvHh5w _model_server_result.datetime_utc '2024-11-22 23:59:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5b35 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5B35 # _exptl.entry_id 5B35 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 378.588 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-10,13-dimethyl-17-[(2R)-pentan-2-yl]-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthrene-3,7,12-triol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5B35 _cell.length_a 46.2 _cell.length_b 103 _cell.length_c 128.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5B35 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.294 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H42 O3' _chem_comp.formula_weight 378.588 _chem_comp.id 4QM _chem_comp.mon_nstd_flag . _chem_comp.name (3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-10,13-dimethyl-17-[(2R)-pentan-2-yl]-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthrene-3,7,12-triol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 C23 4QM sing 1 n n C23 C22 4QM sing 2 n n C22 C20 4QM sing 3 n n C21 C20 4QM sing 4 n n C20 C9 4QM sing 5 n n O4 C4 4QM sing 6 n n C9 C8 4QM sing 7 n n C9 C5 4QM sing 8 n n C8 C7 4QM sing 9 n n C4 C5 4QM sing 10 n n C4 C3 4QM sing 11 n n C5 C6 4QM sing 12 n n C5 C10 4QM sing 13 n n O2 C13 4QM sing 14 n n C6 C7 4QM sing 15 n n C6 C18 4QM sing 16 n n C3 C19 4QM sing 17 n n O3 C17 4QM sing 18 n n C12 C13 4QM sing 19 n n C12 C1 4QM sing 20 n n C19 C18 4QM sing 21 n n C19 C2 4QM sing 22 n n C13 C14 4QM sing 23 n n C18 C17 4QM sing 24 n n C14 C15 4QM sing 25 n n C17 C16 4QM sing 26 n n C1 C2 4QM sing 27 n n C2 C15 4QM sing 28 n n C2 C11 4QM sing 29 n n C15 C16 4QM sing 30 n n C1 H1 4QM sing 31 n n C1 H2 4QM sing 32 n n C3 H3 4QM sing 33 n n C3 H4 4QM sing 34 n n C4 H5 4QM sing 35 n n C6 H6 4QM sing 36 n n C7 H7 4QM sing 37 n n C7 H8 4QM sing 38 n n C8 H9 4QM sing 39 n n C8 H10 4QM sing 40 n n C9 H11 4QM sing 41 n n C10 H12 4QM sing 42 n n C10 H13 4QM sing 43 n n C10 H14 4QM sing 44 n n C11 H15 4QM sing 45 n n C11 H16 4QM sing 46 n n C11 H17 4QM sing 47 n n C12 H18 4QM sing 48 n n C12 H19 4QM sing 49 n n C13 H20 4QM sing 50 n n C14 H21 4QM sing 51 n n C14 H22 4QM sing 52 n n C15 H23 4QM sing 53 n n C16 H24 4QM sing 54 n n C16 H25 4QM sing 55 n n C17 H26 4QM sing 56 n n C18 H27 4QM sing 57 n n C19 H28 4QM sing 58 n n C20 H29 4QM sing 59 n n C21 H30 4QM sing 60 n n C21 H31 4QM sing 61 n n C21 H32 4QM sing 62 n n C22 H33 4QM sing 63 n n C22 H34 4QM sing 64 n n C23 H35 4QM sing 65 n n C23 H36 4QM sing 66 n n C24 H37 4QM sing 67 n n C24 H38 4QM sing 68 n n C24 H39 4QM sing 69 n n O2 H40 4QM sing 70 n n O3 H41 4QM sing 71 n n O4 H42 4QM sing 72 n n # _atom_sites.entry_id 5B35 _atom_sites.fract_transf_matrix[1][1] 0.021645 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009709 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00777 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 300 RET RET . C 3 4QM A 1 302 10 4QM CPS . D 4 OCT A 1 303 100 OCT OCT . E 5 D10 A 1 304 200 D10 D10 . F 6 D12 A 1 305 402 D12 D12 . G 5 D10 A 1 306 406 D10 D10 . H 5 D10 A 1 307 407 D10 D10 . I 5 D10 A 1 308 408 D10 D10 . J 7 R16 A 1 309 411 R16 R16 . K 5 D10 A 1 310 250 D10 D10 . L 8 HP6 A 1 311 401 HP6 HP6 . M 8 HP6 A 1 312 252 HP6 HP6 . N 9 DD9 A 1 313 253 DD9 DD9 . O 6 D12 A 1 314 255 D12 D12 . P 6 D12 A 1 315 256 D12 D12 . Q 9 DD9 A 1 316 258 DD9 DD9 . R 7 R16 A 1 317 259 R16 R16 . S 10 HOH A 1 401 556 HOH HOH . S 10 HOH A 2 402 401 HOH HOH . S 10 HOH A 3 403 400 HOH HOH . S 10 HOH A 4 404 402 HOH HOH . S 10 HOH A 5 405 403 HOH HOH . S 10 HOH A 6 406 423 HOH HOH . S 10 HOH A 7 407 535 HOH HOH . S 10 HOH A 8 408 537 HOH HOH . S 10 HOH A 9 409 418 HOH HOH . S 10 HOH A 10 410 554 HOH HOH . S 10 HOH A 11 411 529 HOH HOH . S 10 HOH A 12 412 404 HOH HOH . S 10 HOH A 13 413 501 HOH HOH . S 10 HOH A 14 414 527 HOH HOH . S 10 HOH A 15 415 526 HOH HOH . S 10 HOH A 16 416 550 HOH HOH . S 10 HOH A 17 417 419 HOH HOH . S 10 HOH A 18 418 531 HOH HOH . S 10 HOH A 19 419 542 HOH HOH . S 10 HOH A 20 420 559 HOH HOH . S 10 HOH A 21 421 523 HOH HOH . S 10 HOH A 22 422 543 HOH HOH . S 10 HOH A 23 423 522 HOH HOH . S 10 HOH A 24 424 547 HOH HOH . S 10 HOH A 25 425 558 HOH HOH . S 10 HOH A 26 426 551 HOH HOH . S 10 HOH A 27 427 555 HOH HOH . S 10 HOH A 28 428 429 HOH HOH . S 10 HOH A 29 429 546 HOH HOH . S 10 HOH A 30 430 557 HOH HOH . S 10 HOH A 31 431 528 HOH HOH . S 10 HOH A 32 432 524 HOH HOH . S 10 HOH A 33 433 549 HOH HOH . S 10 HOH A 34 434 540 HOH HOH . S 10 HOH A 35 435 552 HOH HOH . S 10 HOH A 36 436 548 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4QM . . . C 3 4.994 75.242 -15.452 0.7 94.82 ? C1 4QM 302 A 1 HETATM 2 C C2 4QM . . . C 3 6.5 75.406 -15.12 0.7 88.92 ? C2 4QM 302 A 1 HETATM 3 C C3 4QM . . . C 3 6.713 77.319 -16.85 0.7 85.49 ? C3 4QM 302 A 1 HETATM 4 C C4 4QM . . . C 3 7.549 78.05 -17.907 0.7 86.33 ? C4 4QM 302 A 1 HETATM 5 C C5 4QM . . . C 3 9.047 78.211 -17.575 0.7 88.65 ? C5 4QM 302 A 1 HETATM 6 C C6 4QM . . . C 3 9.601 76.84 -17.177 0.7 90.11 ? C6 4QM 302 A 1 HETATM 7 C C7 4QM . . . C 3 11.128 77.012 -17.17 0.7 80.82 ? C7 4QM 302 A 1 HETATM 8 C C8 4QM . . . C 3 11.379 77.997 -18.305 0.7 83.24 ? C8 4QM 302 A 1 HETATM 9 C C9 4QM . . . C 3 10.012 78.584 -18.743 0.7 88.16 ? C9 4QM 302 A 1 HETATM 10 C C10 4QM . . . C 3 9.152 79.224 -16.414 0.7 95.49 ? C10 4QM 302 A 1 HETATM 11 C C11 4QM . . . C 3 6.554 76.268 -13.849 0.7 88.78 ? C11 4QM 302 A 1 HETATM 12 C C12 4QM . . . C 3 4.627 74.167 -16.494 0.7 93.35 ? C12 4QM 302 A 1 HETATM 13 C C13 4QM . . . C 3 5.241 72.8 -16.135 0.7 92.82 ? C13 4QM 302 A 1 HETATM 14 C C14 4QM . . . C 3 6.74 72.914 -15.825 0.7 90.72 ? C14 4QM 302 A 1 HETATM 15 C C15 4QM . . . C 3 7.097 74.019 -14.8 0.7 87.73 ? C15 4QM 302 A 1 HETATM 16 C C16 4QM . . . C 3 8.621 74.024 -14.556 0.7 83.67 ? C16 4QM 302 A 1 HETATM 17 C C17 4QM . . . C 3 9.478 74.834 -15.533 0.7 82.09 ? C17 4QM 302 A 1 HETATM 18 C C18 4QM . . . C 3 8.858 76.175 -15.967 0.7 91.06 ? C18 4QM 302 A 1 HETATM 19 C C19 4QM . . . C 3 7.333 76.03 -16.284 0.7 87.25 ? C19 4QM 302 A 1 HETATM 20 C C20 4QM . . . C 3 10.106 80.057 -19.26 0.7 82.76 ? C20 4QM 302 A 1 HETATM 21 C C21 4QM . . . C 3 8.751 80.755 -19.452 0.7 92.44 ? C21 4QM 302 A 1 HETATM 22 C C22 4QM . . . C 3 10.955 80.188 -20.549 0.7 77.78 ? C22 4QM 302 A 1 HETATM 23 C C23 4QM . . . C 3 10.323 80.885 -21.774 0.7 78.9 ? C23 4QM 302 A 1 HETATM 24 C C24 4QM . . . C 3 11.372 81.531 -22.629 0.7 72.81 ? C24 4QM 302 A 1 HETATM 25 O O2 4QM . . . C 3 5.09 71.851 -17.2 0.7 79.17 ? O2 4QM 302 A 1 HETATM 26 O O3 4QM . . . C 3 9.761 74.003 -16.653 0.7 81 ? O3 4QM 302 A 1 HETATM 27 O O4 4QM . . . C 3 7.32 77.362 -19.142 0.7 92.36 ? O4 4QM 302 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 27 #