data_5B35 # _model_server_result.job_id PBV4-aqlNEkRwtsx9nagUg _model_server_result.datetime_utc '2024-11-13 04:34:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5b35 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 5B35 # _exptl.entry_id 5B35 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 170.335 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECANE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5B35 _cell.length_a 46.2 _cell.length_b 103 _cell.length_c 128.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5B35 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 O N N ? 6 P N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.294 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C12 H26' _chem_comp.formula_weight 170.335 _chem_comp.id D12 _chem_comp.mon_nstd_flag . _chem_comp.name DODECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D12 sing 173 n n C1 H11 D12 sing 174 n n C1 H12 D12 sing 175 n n C1 H13 D12 sing 176 n n C2 C3 D12 sing 177 n n C2 H21 D12 sing 178 n n C2 H22 D12 sing 179 n n C3 C4 D12 sing 180 n n C3 H31 D12 sing 181 n n C3 H32 D12 sing 182 n n C4 C5 D12 sing 183 n n C4 H41 D12 sing 184 n n C4 H42 D12 sing 185 n n C5 C6 D12 sing 186 n n C5 H51 D12 sing 187 n n C5 H52 D12 sing 188 n n C6 C7 D12 sing 189 n n C6 H61 D12 sing 190 n n C6 H62 D12 sing 191 n n C7 C8 D12 sing 192 n n C7 H71 D12 sing 193 n n C7 H72 D12 sing 194 n n C8 C9 D12 sing 195 n n C8 H81 D12 sing 196 n n C8 H82 D12 sing 197 n n C9 C10 D12 sing 198 n n C9 H91 D12 sing 199 n n C9 H92 D12 sing 200 n n C10 C11 D12 sing 201 n n C10 H101 D12 sing 202 n n C10 H102 D12 sing 203 n n C11 C12 D12 sing 204 n n C11 H111 D12 sing 205 n n C11 H112 D12 sing 206 n n C12 H121 D12 sing 207 n n C12 H122 D12 sing 208 n n C12 H123 D12 sing 209 n n # _atom_sites.entry_id 5B35 _atom_sites.fract_transf_matrix[1][1] 0.021645 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009709 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00777 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 300 RET RET . C 3 4QM A 1 302 10 4QM CPS . D 4 OCT A 1 303 100 OCT OCT . E 5 D10 A 1 304 200 D10 D10 . F 6 D12 A 1 305 402 D12 D12 . G 5 D10 A 1 306 406 D10 D10 . H 5 D10 A 1 307 407 D10 D10 . I 5 D10 A 1 308 408 D10 D10 . J 7 R16 A 1 309 411 R16 R16 . K 5 D10 A 1 310 250 D10 D10 . L 8 HP6 A 1 311 401 HP6 HP6 . M 8 HP6 A 1 312 252 HP6 HP6 . N 9 DD9 A 1 313 253 DD9 DD9 . O 6 D12 A 1 314 255 D12 D12 . P 6 D12 A 1 315 256 D12 D12 . Q 9 DD9 A 1 316 258 DD9 DD9 . R 7 R16 A 1 317 259 R16 R16 . S 10 HOH A 1 401 556 HOH HOH . S 10 HOH A 2 402 401 HOH HOH . S 10 HOH A 3 403 400 HOH HOH . S 10 HOH A 4 404 402 HOH HOH . S 10 HOH A 5 405 403 HOH HOH . S 10 HOH A 6 406 423 HOH HOH . S 10 HOH A 7 407 535 HOH HOH . S 10 HOH A 8 408 537 HOH HOH . S 10 HOH A 9 409 418 HOH HOH . S 10 HOH A 10 410 554 HOH HOH . S 10 HOH A 11 411 529 HOH HOH . S 10 HOH A 12 412 404 HOH HOH . S 10 HOH A 13 413 501 HOH HOH . S 10 HOH A 14 414 527 HOH HOH . S 10 HOH A 15 415 526 HOH HOH . S 10 HOH A 16 416 550 HOH HOH . S 10 HOH A 17 417 419 HOH HOH . S 10 HOH A 18 418 531 HOH HOH . S 10 HOH A 19 419 542 HOH HOH . S 10 HOH A 20 420 559 HOH HOH . S 10 HOH A 21 421 523 HOH HOH . S 10 HOH A 22 422 543 HOH HOH . S 10 HOH A 23 423 522 HOH HOH . S 10 HOH A 24 424 547 HOH HOH . S 10 HOH A 25 425 558 HOH HOH . S 10 HOH A 26 426 551 HOH HOH . S 10 HOH A 27 427 555 HOH HOH . S 10 HOH A 28 428 429 HOH HOH . S 10 HOH A 29 429 546 HOH HOH . S 10 HOH A 30 430 557 HOH HOH . S 10 HOH A 31 431 528 HOH HOH . S 10 HOH A 32 432 524 HOH HOH . S 10 HOH A 33 433 549 HOH HOH . S 10 HOH A 34 434 540 HOH HOH . S 10 HOH A 35 435 552 HOH HOH . S 10 HOH A 36 436 548 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D12 . . . F 6 6.272 61.96 -0.292 1 99.96 ? C1 D12 305 A 1 HETATM 2 C C2 D12 . . . F 6 5.891 61.711 -1.746 1 103.6 ? C2 D12 305 A 1 HETATM 3 C C3 D12 . . . F 6 4.998 60.476 -1.892 1 99.71 ? C3 D12 305 A 1 HETATM 4 C C4 D12 . . . F 6 5.65 59.286 -2.603 1 100.06 ? C4 D12 305 A 1 HETATM 5 C C5 D12 . . . F 6 5.064 59.012 -4.003 1 107.49 ? C5 D12 305 A 1 HETATM 6 C C6 D12 . . . F 6 4.74 57.533 -4.26 1 100.85 ? C6 D12 305 A 1 HETATM 7 C C7 D12 . . . F 6 5.489 56.937 -5.457 1 103.16 ? C7 D12 305 A 1 HETATM 8 C C8 D12 . . . F 6 4.611 56.671 -6.689 1 99.79 ? C8 D12 305 A 1 HETATM 9 C C9 D12 . . . F 6 4.932 57.552 -7.895 1 92.98 ? C9 D12 305 A 1 HETATM 10 C C10 D12 . . . F 6 5.621 56.768 -9.009 1 93.03 ? C10 D12 305 A 1 HETATM 11 C C11 D12 . . . F 6 6.58 57.601 -9.855 1 89.75 ? C11 D12 305 A 1 HETATM 12 C C12 D12 . . . F 6 5.884 58.503 -10.848 1 90.19 ? C12 D12 305 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #