data_5B35 # _model_server_result.job_id 2KnUvUDlQtdeJefFIOcZaA _model_server_result.datetime_utc '2024-11-13 04:34:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5b35 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":309}' # _entry.id 5B35 # _exptl.entry_id 5B35 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 226.441 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEXADECANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5B35 _cell.length_a 46.2 _cell.length_b 103 _cell.length_c 128.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5B35 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 J N N ? 7 R N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.294 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C16 H34' _chem_comp.formula_weight 226.441 _chem_comp.id R16 _chem_comp.mon_nstd_flag . _chem_comp.name HEXADECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 C28 R16 sing 458 n n C27 H271 R16 sing 459 n n C27 H272 R16 sing 460 n n C27 H273 R16 sing 461 n n C28 C29 R16 sing 462 n n C28 H281 R16 sing 463 n n C28 H282 R16 sing 464 n n C29 C30 R16 sing 465 n n C29 H291 R16 sing 466 n n C29 H292 R16 sing 467 n n C30 C31 R16 sing 468 n n C30 H301 R16 sing 469 n n C30 H302 R16 sing 470 n n C31 C32 R16 sing 471 n n C31 H311 R16 sing 472 n n C31 H312 R16 sing 473 n n C32 C33 R16 sing 474 n n C32 H321 R16 sing 475 n n C32 H322 R16 sing 476 n n C33 C34 R16 sing 477 n n C33 H331 R16 sing 478 n n C33 H332 R16 sing 479 n n C34 C35 R16 sing 480 n n C34 H341 R16 sing 481 n n C34 H342 R16 sing 482 n n C35 C36 R16 sing 483 n n C35 H351 R16 sing 484 n n C35 H352 R16 sing 485 n n C36 C37 R16 sing 486 n n C36 H361 R16 sing 487 n n C36 H362 R16 sing 488 n n C37 C38 R16 sing 489 n n C37 H371 R16 sing 490 n n C37 H372 R16 sing 491 n n C38 C39 R16 sing 492 n n C38 H381 R16 sing 493 n n C38 H382 R16 sing 494 n n C39 C40 R16 sing 495 n n C39 H391 R16 sing 496 n n C39 H392 R16 sing 497 n n C40 C41 R16 sing 498 n n C40 H401 R16 sing 499 n n C40 H402 R16 sing 500 n n C41 C42 R16 sing 501 n n C41 H411 R16 sing 502 n n C41 H412 R16 sing 503 n n C42 H421 R16 sing 504 n n C42 H422 R16 sing 505 n n C42 H423 R16 sing 506 n n # _atom_sites.entry_id 5B35 _atom_sites.fract_transf_matrix[1][1] 0.021645 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009709 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00777 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 300 RET RET . C 3 4QM A 1 302 10 4QM CPS . D 4 OCT A 1 303 100 OCT OCT . E 5 D10 A 1 304 200 D10 D10 . F 6 D12 A 1 305 402 D12 D12 . G 5 D10 A 1 306 406 D10 D10 . H 5 D10 A 1 307 407 D10 D10 . I 5 D10 A 1 308 408 D10 D10 . J 7 R16 A 1 309 411 R16 R16 . K 5 D10 A 1 310 250 D10 D10 . L 8 HP6 A 1 311 401 HP6 HP6 . M 8 HP6 A 1 312 252 HP6 HP6 . N 9 DD9 A 1 313 253 DD9 DD9 . O 6 D12 A 1 314 255 D12 D12 . P 6 D12 A 1 315 256 D12 D12 . Q 9 DD9 A 1 316 258 DD9 DD9 . R 7 R16 A 1 317 259 R16 R16 . S 10 HOH A 1 401 556 HOH HOH . S 10 HOH A 2 402 401 HOH HOH . S 10 HOH A 3 403 400 HOH HOH . S 10 HOH A 4 404 402 HOH HOH . S 10 HOH A 5 405 403 HOH HOH . S 10 HOH A 6 406 423 HOH HOH . S 10 HOH A 7 407 535 HOH HOH . S 10 HOH A 8 408 537 HOH HOH . S 10 HOH A 9 409 418 HOH HOH . S 10 HOH A 10 410 554 HOH HOH . S 10 HOH A 11 411 529 HOH HOH . S 10 HOH A 12 412 404 HOH HOH . S 10 HOH A 13 413 501 HOH HOH . S 10 HOH A 14 414 527 HOH HOH . S 10 HOH A 15 415 526 HOH HOH . S 10 HOH A 16 416 550 HOH HOH . S 10 HOH A 17 417 419 HOH HOH . S 10 HOH A 18 418 531 HOH HOH . S 10 HOH A 19 419 542 HOH HOH . S 10 HOH A 20 420 559 HOH HOH . S 10 HOH A 21 421 523 HOH HOH . S 10 HOH A 22 422 543 HOH HOH . S 10 HOH A 23 423 522 HOH HOH . S 10 HOH A 24 424 547 HOH HOH . S 10 HOH A 25 425 558 HOH HOH . S 10 HOH A 26 426 551 HOH HOH . S 10 HOH A 27 427 555 HOH HOH . S 10 HOH A 28 428 429 HOH HOH . S 10 HOH A 29 429 546 HOH HOH . S 10 HOH A 30 430 557 HOH HOH . S 10 HOH A 31 431 528 HOH HOH . S 10 HOH A 32 432 524 HOH HOH . S 10 HOH A 33 433 549 HOH HOH . S 10 HOH A 34 434 540 HOH HOH . S 10 HOH A 35 435 552 HOH HOH . S 10 HOH A 36 436 548 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C27 R16 . . . J 7 40.327 52.21 15.94 1 108.79 ? C27 R16 309 A 1 HETATM 2 C C28 R16 . . . J 7 40.138 51.019 15 1 103.45 ? C28 R16 309 A 1 HETATM 3 C C29 R16 . . . J 7 39.94 51.453 13.541 1 94.74 ? C29 R16 309 A 1 HETATM 4 C C30 R16 . . . J 7 38.761 50.748 12.869 1 92.43 ? C30 R16 309 A 1 HETATM 5 C C31 R16 . . . J 7 38.484 51.284 11.46 1 88.53 ? C31 R16 309 A 1 HETATM 6 C C32 R16 . . . J 7 37.076 51.006 10.892 1 79.82 ? C32 R16 309 A 1 HETATM 7 C C33 R16 . . . J 7 36.986 51.567 9.465 1 75.61 ? C33 R16 309 A 1 HETATM 8 C C34 R16 . . . J 7 35.747 51.194 8.594 1 80.83 ? C34 R16 309 A 1 HETATM 9 C C35 R16 . . . J 7 34.418 51.874 8.99 1 75.8 ? C35 R16 309 A 1 HETATM 10 C C36 R16 . . . J 7 33.462 52.095 7.818 1 66.7 ? C36 R16 309 A 1 HETATM 11 C C37 R16 . . . J 7 31.984 52.095 8.219 1 64.1 ? C37 R16 309 A 1 HETATM 12 C C38 R16 . . . J 7 31.59 52.815 9.496 1 66.97 ? C38 R16 309 A 1 HETATM 13 C C39 R16 . . . J 7 30.063 52.985 9.576 1 64.08 ? C39 R16 309 A 1 HETATM 14 C C40 R16 . . . J 7 29.622 53.481 10.947 1 63.86 ? C40 R16 309 A 1 HETATM 15 C C41 R16 . . . J 7 28.389 52.79 11.479 1 62.31 ? C41 R16 309 A 1 HETATM 16 C C42 R16 . . . J 7 27.21 53.687 11.377 1 63.84 ? C42 R16 309 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #