data_5B35
#
_model_server_result.job_id            cT7fIrBWRD-iHv6aLQJZDw 
_model_server_result.datetime_utc      '2024-11-23 00:36:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5b35 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":313}' 
#
_entry.id    5B35 
#
_exptl.entry_id    5B35 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              128.255 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            nonane 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5B35 
_cell.length_a            46.2 
_cell.length_b            103 
_cell.length_c            128.7 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5B35 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 9 N N N 
? 9 Q N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             216 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              216 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            C15 
_struct_conn.ptnr2_label_comp_id            RET 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             RET 
_struct_conn.ptnr2_auth_seq_id              301 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.294 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C9 H20' 
_chem_comp.formula_weight    128.255 
_chem_comp.id                DD9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              nonane 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C1 DD9 sing 210 n n 
C1 H1 DD9 sing 211 n n 
C1 H1A DD9 sing 212 n n 
C1 H1B DD9 sing 213 n n 
C3 C2 DD9 sing 214 n n 
C2 H2 DD9 sing 215 n n 
C2 H2A DD9 sing 216 n n 
C4 C3 DD9 sing 217 n n 
C3 H3 DD9 sing 218 n n 
C3 H3A DD9 sing 219 n n 
C5 C4 DD9 sing 220 n n 
C4 H4 DD9 sing 221 n n 
C4 H4A DD9 sing 222 n n 
C6 C5 DD9 sing 223 n n 
C5 H5 DD9 sing 224 n n 
C5 H5A DD9 sing 225 n n 
C7 C6 DD9 sing 226 n n 
C6 H6 DD9 sing 227 n n 
C6 H6A DD9 sing 228 n n 
C8 C7 DD9 sing 229 n n 
C7 H7 DD9 sing 230 n n 
C7 H7A DD9 sing 231 n n 
C9 C8 DD9 sing 232 n n 
C8 H8 DD9 sing 233 n n 
C8 H8A DD9 sing 234 n n 
C9 H9 DD9 sing 235 n n 
C9 H9A DD9 sing 236 n n 
C9 H9B DD9 sing 237 n n 
#
_atom_sites.entry_id                     5B35 
_atom_sites.fract_transf_matrix[1][1]    0.021645 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009709 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00777 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RET A 1 301 300 RET RET . 
C 3 4QM A 1 302 10 4QM CPS . 
D 4 OCT A 1 303 100 OCT OCT . 
E 5 D10 A 1 304 200 D10 D10 . 
F 6 D12 A 1 305 402 D12 D12 . 
G 5 D10 A 1 306 406 D10 D10 . 
H 5 D10 A 1 307 407 D10 D10 . 
I 5 D10 A 1 308 408 D10 D10 . 
J 7 R16 A 1 309 411 R16 R16 . 
K 5 D10 A 1 310 250 D10 D10 . 
L 8 HP6 A 1 311 401 HP6 HP6 . 
M 8 HP6 A 1 312 252 HP6 HP6 . 
N 9 DD9 A 1 313 253 DD9 DD9 . 
O 6 D12 A 1 314 255 D12 D12 . 
P 6 D12 A 1 315 256 D12 D12 . 
Q 9 DD9 A 1 316 258 DD9 DD9 . 
R 7 R16 A 1 317 259 R16 R16 . 
S 10 HOH A 1 401 556 HOH HOH . 
S 10 HOH A 2 402 401 HOH HOH . 
S 10 HOH A 3 403 400 HOH HOH . 
S 10 HOH A 4 404 402 HOH HOH . 
S 10 HOH A 5 405 403 HOH HOH . 
S 10 HOH A 6 406 423 HOH HOH . 
S 10 HOH A 7 407 535 HOH HOH . 
S 10 HOH A 8 408 537 HOH HOH . 
S 10 HOH A 9 409 418 HOH HOH . 
S 10 HOH A 10 410 554 HOH HOH . 
S 10 HOH A 11 411 529 HOH HOH . 
S 10 HOH A 12 412 404 HOH HOH . 
S 10 HOH A 13 413 501 HOH HOH . 
S 10 HOH A 14 414 527 HOH HOH . 
S 10 HOH A 15 415 526 HOH HOH . 
S 10 HOH A 16 416 550 HOH HOH . 
S 10 HOH A 17 417 419 HOH HOH . 
S 10 HOH A 18 418 531 HOH HOH . 
S 10 HOH A 19 419 542 HOH HOH . 
S 10 HOH A 20 420 559 HOH HOH . 
S 10 HOH A 21 421 523 HOH HOH . 
S 10 HOH A 22 422 543 HOH HOH . 
S 10 HOH A 23 423 522 HOH HOH . 
S 10 HOH A 24 424 547 HOH HOH . 
S 10 HOH A 25 425 558 HOH HOH . 
S 10 HOH A 26 426 551 HOH HOH . 
S 10 HOH A 27 427 555 HOH HOH . 
S 10 HOH A 28 428 429 HOH HOH . 
S 10 HOH A 29 429 546 HOH HOH . 
S 10 HOH A 30 430 557 HOH HOH . 
S 10 HOH A 31 431 528 HOH HOH . 
S 10 HOH A 32 432 524 HOH HOH . 
S 10 HOH A 33 433 549 HOH HOH . 
S 10 HOH A 34 434 540 HOH HOH . 
S 10 HOH A 35 435 552 HOH HOH . 
S 10 HOH A 36 436 548 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DD9 . . . N 9 42.437 62.736 -3.657 1 98.21 ? C1 DD9 313 A 1 
HETATM 2 C C2 DD9 . . . N 9 43.197 61.763 -4.548 1 101.8 ? C2 DD9 313 A 1 
HETATM 3 C C3 DD9 . . . N 9 43.031 62.027 -6.052 1 98.71 ? C3 DD9 313 A 1 
HETATM 4 C C4 DD9 . . . N 9 42.88 60.74 -6.873 1 97.64 ? C4 DD9 313 A 1 
HETATM 5 C C5 DD9 . . . N 9 42.658 61.067 -8.348 1 102.55 ? C5 DD9 313 A 1 
HETATM 6 C C6 DD9 . . . N 9 42.467 59.833 -9.238 1 101.57 ? C6 DD9 313 A 1 
HETATM 7 C C7 DD9 . . . N 9 41.631 60.184 -10.477 1 101.25 ? C7 DD9 313 A 1 
HETATM 8 C C8 DD9 . . . N 9 41.767 59.195 -11.639 1 100 ? C8 DD9 313 A 1 
HETATM 9 C C9 DD9 . . . N 9 41.743 59.919 -12.97 1 101.47 ? C9 DD9 313 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           9 
#