data_5B3J
#
_model_server_result.job_id            uLN88LjYcUDeL3mY6fJGgA 
_model_server_result.datetime_utc      '2024-12-26 23:24:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5b3j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":501}' 
#
_entry.id    5B3J 
#
_exptl.entry_id    5B3J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          127.09 
_cell.angle_gamma         90 
_cell.entry_id            5B3J 
_cell.length_a            247.249 
_cell.length_b            79.903 
_cell.length_c            181.314 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5B3J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,J,L 1 1 
B,E,I,K,N 2 1 
D,F,M,O 3 1 
G,H,P,Q 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 57 A CYS 79 1_555 A SG CYS 307 A CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 B SG CYS 57 B CYS 79 1_555 B SG CYS 307 B CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf3 C SG CYS 56 C CYS 86 1_555 C SG CYS 291 C CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf4 D SG CYS 22 E CYS 22 1_555 D SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf5 D SG CYS 149 E CYS 149 1_555 D SG CYS 204 E CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 E SG CYS 56 D CYS 86 1_555 E SG CYS 291 D CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 F SG CYS 23 F CYS 23 1_555 F SG CYS 88 F CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf8 F SG CYS 133 F CYS 133 1_555 F SG CYS 193 F CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf9 G SG CYS 22 H CYS 22 1_555 G SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
disulf ? disulf10 G SG CYS 149 H CYS 149 1_555 G SG CYS 204 H CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf11 H SG CYS 23 L CYS 23 1_555 H SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf12 H SG CYS 133 L CYS 133 1_555 H SG CYS 193 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc1 B O ASP 342 B ASP 364 1_555 I NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.018 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5B3J 
_atom_sites.fract_transf_matrix[1][1]    0.004045 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003058 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012515 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006914 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 NA B 1 501 501 NA NA . 
J 6 HOH A 1 501 501 HOH HOH . 
J 6 HOH A 2 502 502 HOH HOH . 
J 6 HOH A 3 503 503 HOH HOH . 
J 6 HOH A 4 504 504 HOH HOH . 
J 6 HOH A 5 505 505 HOH HOH . 
J 6 HOH A 6 506 506 HOH HOH . 
J 6 HOH A 7 507 507 HOH HOH . 
J 6 HOH A 8 508 508 HOH HOH . 
J 6 HOH A 9 509 509 HOH HOH . 
J 6 HOH A 10 510 510 HOH HOH . 
J 6 HOH A 11 511 511 HOH HOH . 
J 6 HOH A 12 512 512 HOH HOH . 
J 6 HOH A 13 513 513 HOH HOH . 
K 6 HOH B 1 601 601 HOH HOH . 
K 6 HOH B 2 602 602 HOH HOH . 
K 6 HOH B 3 603 603 HOH HOH . 
K 6 HOH B 4 604 604 HOH HOH . 
K 6 HOH B 5 605 605 HOH HOH . 
K 6 HOH B 6 606 606 HOH HOH . 
K 6 HOH B 7 607 607 HOH HOH . 
K 6 HOH B 8 608 608 HOH HOH . 
L 6 HOH C 1 401 401 HOH HOH . 
L 6 HOH C 2 402 402 HOH HOH . 
L 6 HOH C 3 403 403 HOH HOH . 
L 6 HOH C 4 404 404 HOH HOH . 
L 6 HOH C 5 405 405 HOH HOH . 
L 6 HOH C 6 406 406 HOH HOH . 
L 6 HOH C 7 407 407 HOH HOH . 
L 6 HOH C 8 408 408 HOH HOH . 
L 6 HOH C 9 409 409 HOH HOH . 
L 6 HOH C 10 410 410 HOH HOH . 
L 6 HOH C 11 411 411 HOH HOH . 
M 6 HOH E 1 301 301 HOH HOH . 
M 6 HOH E 2 302 302 HOH HOH . 
M 6 HOH E 3 303 303 HOH HOH . 
M 6 HOH E 4 304 304 HOH HOH . 
M 6 HOH E 5 305 305 HOH HOH . 
M 6 HOH E 6 306 306 HOH HOH . 
M 6 HOH E 7 307 307 HOH HOH . 
M 6 HOH E 8 308 308 HOH HOH . 
M 6 HOH E 9 309 309 HOH HOH . 
M 6 HOH E 10 310 310 HOH HOH . 
N 6 HOH D 1 401 401 HOH HOH . 
N 6 HOH D 2 402 402 HOH HOH . 
N 6 HOH D 3 403 403 HOH HOH . 
N 6 HOH D 4 404 404 HOH HOH . 
N 6 HOH D 5 405 405 HOH HOH . 
N 6 HOH D 6 406 406 HOH HOH . 
N 6 HOH D 7 407 407 HOH HOH . 
N 6 HOH D 8 408 408 HOH HOH . 
N 6 HOH D 9 409 409 HOH HOH . 
N 6 HOH D 10 410 410 HOH HOH . 
O 6 HOH F 1 301 301 HOH HOH . 
O 6 HOH F 2 302 302 HOH HOH . 
O 6 HOH F 3 303 303 HOH HOH . 
O 6 HOH F 4 304 304 HOH HOH . 
O 6 HOH F 5 305 305 HOH HOH . 
O 6 HOH F 6 306 306 HOH HOH . 
O 6 HOH F 7 307 307 HOH HOH . 
O 6 HOH F 8 308 308 HOH HOH . 
O 6 HOH F 9 309 309 HOH HOH . 
O 6 HOH F 10 310 310 HOH HOH . 
O 6 HOH F 11 311 311 HOH HOH . 
O 6 HOH F 12 312 312 HOH HOH . 
O 6 HOH F 13 313 313 HOH HOH . 
O 6 HOH F 14 314 314 HOH HOH . 
O 6 HOH F 15 315 315 HOH HOH . 
O 6 HOH F 16 316 316 HOH HOH . 
P 6 HOH H 1 301 301 HOH HOH . 
P 6 HOH H 2 302 302 HOH HOH . 
P 6 HOH H 3 303 303 HOH HOH . 
P 6 HOH H 4 304 304 HOH HOH . 
P 6 HOH H 5 305 305 HOH HOH . 
P 6 HOH H 6 306 306 HOH HOH . 
P 6 HOH H 7 307 307 HOH HOH . 
P 6 HOH H 8 308 308 HOH HOH . 
P 6 HOH H 9 309 309 HOH HOH . 
P 6 HOH H 10 310 310 HOH HOH . 
P 6 HOH H 11 311 311 HOH HOH . 
P 6 HOH H 12 312 312 HOH HOH . 
P 6 HOH H 13 313 313 HOH HOH . 
P 6 HOH H 14 314 314 HOH HOH . 
P 6 HOH H 15 315 315 HOH HOH . 
P 6 HOH H 16 316 316 HOH HOH . 
P 6 HOH H 17 317 317 HOH HOH . 
P 6 HOH H 18 318 318 HOH HOH . 
P 6 HOH H 19 319 319 HOH HOH . 
P 6 HOH H 20 320 320 HOH HOH . 
P 6 HOH H 21 321 321 HOH HOH . 
Q 6 HOH L 1 301 301 HOH HOH . 
Q 6 HOH L 2 302 302 HOH HOH . 
Q 6 HOH L 3 303 303 HOH HOH . 
Q 6 HOH L 4 304 304 HOH HOH . 
Q 6 HOH L 5 305 305 HOH HOH . 
Q 6 HOH L 6 306 306 HOH HOH . 
Q 6 HOH L 7 307 307 HOH HOH . 
Q 6 HOH L 8 308 308 HOH HOH . 
Q 6 HOH L 9 309 309 HOH HOH . 
Q 6 HOH L 10 310 310 HOH HOH . 
Q 6 HOH L 11 311 311 HOH HOH . 
Q 6 HOH L 12 312 312 HOH HOH . 
Q 6 HOH L 13 313 313 HOH HOH . 
Q 6 HOH L 14 314 314 HOH HOH . 
Q 6 HOH L 15 315 315 HOH HOH . 
Q 6 HOH L 16 316 316 HOH HOH . 
Q 6 HOH L 17 317 317 HOH HOH . 
Q 6 HOH L 18 318 318 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         I 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               -85.246 
_atom_site.Cartn_y               46.872 
_atom_site.Cartn_z               67.959 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        52.12 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              105 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           239 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#