data_5B3R # _model_server_result.job_id OoQ14LJjt-eEvUr3312i7g _model_server_result.datetime_utc '2025-03-13 11:03:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5b3r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2002}' # _entry.id 5B3R # _exptl.entry_id 5B3R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5B3R _cell.length_a 78.55 _cell.length_b 87.38 _cell.length_c 105.75 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5B3R _symmetry.cell_setting ? _symmetry.Int_Tables_number 17 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 77 A HIS 95 1_555 C ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc2 A ND1 HIS 79 A HIS 97 1_555 C ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc3 A OD2 ASP 81 A ASP 99 1_555 D ZN ZN . A ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc4 A NE2 HIS 139 A HIS 157 1_555 C ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc5 A SG CYS 158 A CYS 176 1_555 D ZN ZN . A ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc6 A NE2 HIS 197 A HIS 215 1_555 D ZN ZN . A ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? metalc ? metalc7 C ZN ZN . A ZN 2001 1_555 E O5 CIT . A CIT 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc8 C ZN ZN . A ZN 2001 1_555 E O6 CIT . A CIT 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? metalc ? metalc9 D ZN ZN . A ZN 2002 1_555 E O4 CIT . A CIT 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc10 D ZN ZN . A ZN 2002 1_555 E O5 CIT . A CIT 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc11 D ZN ZN . A ZN 2002 1_555 E O7 CIT . A CIT 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc12 B NE2 HIS 77 B HIS 95 1_555 F ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc13 B ND1 HIS 79 B HIS 97 1_555 F ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc14 B OD2 ASP 81 B ASP 99 1_555 G ZN ZN . B ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc15 B NE2 HIS 139 B HIS 157 1_555 F ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc16 B SG CYS 158 B CYS 176 1_555 G ZN ZN . B ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc17 B NE2 HIS 197 B HIS 215 1_555 G ZN ZN . B ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc18 F ZN ZN . B ZN 2001 1_555 H O5 CIT . B CIT 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? metalc ? metalc19 G ZN ZN . B ZN 2002 1_555 H O7 CIT . B CIT 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc20 G ZN ZN . B ZN 2002 1_555 H O3 CIT . B CIT 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5B3R _atom_sites.fract_transf_matrix[1][1] 0.012731 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011444 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009456 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 2001 2001 ZN ZN . D 2 ZN A 1 2002 2002 ZN ZN . E 3 CIT A 1 2003 2011 CIT CIT . F 2 ZN B 1 2001 2001 ZN ZN . G 2 ZN B 1 2002 2002 ZN ZN . H 3 CIT B 1 2003 2011 CIT CIT . I 4 HOH A 1 2101 155 HOH HOH . I 4 HOH A 2 2102 30 HOH HOH . I 4 HOH A 3 2103 113 HOH HOH . I 4 HOH A 4 2104 121 HOH HOH . I 4 HOH A 5 2105 164 HOH HOH . I 4 HOH A 6 2106 86 HOH HOH . I 4 HOH A 7 2107 118 HOH HOH . I 4 HOH A 8 2108 62 HOH HOH . I 4 HOH A 9 2109 34 HOH HOH . I 4 HOH A 10 2110 163 HOH HOH . I 4 HOH A 11 2111 60 HOH HOH . I 4 HOH A 12 2112 64 HOH HOH . I 4 HOH A 13 2113 93 HOH HOH . I 4 HOH A 14 2114 1 HOH HOH . I 4 HOH A 15 2115 6 HOH HOH . I 4 HOH A 16 2116 35 HOH HOH . I 4 HOH A 17 2117 31 HOH HOH . I 4 HOH A 18 2118 141 HOH HOH . I 4 HOH A 19 2119 101 HOH HOH . I 4 HOH A 20 2120 46 HOH HOH . I 4 HOH A 21 2121 79 HOH HOH . I 4 HOH A 22 2122 23 HOH HOH . I 4 HOH A 23 2123 58 HOH HOH . I 4 HOH A 24 2124 22 HOH HOH . I 4 HOH A 25 2125 37 HOH HOH . I 4 HOH A 26 2126 102 HOH HOH . I 4 HOH A 27 2127 77 HOH HOH . I 4 HOH A 28 2128 47 HOH HOH . I 4 HOH A 29 2129 21 HOH HOH . I 4 HOH A 30 2130 26 HOH HOH . I 4 HOH A 31 2131 45 HOH HOH . I 4 HOH A 32 2132 151 HOH HOH . I 4 HOH A 33 2133 33 HOH HOH . I 4 HOH A 34 2134 144 HOH HOH . I 4 HOH A 35 2135 126 HOH HOH . I 4 HOH A 36 2136 157 HOH HOH . I 4 HOH A 37 2137 104 HOH HOH . I 4 HOH A 38 2138 95 HOH HOH . I 4 HOH A 39 2139 29 HOH HOH . I 4 HOH A 40 2140 130 HOH HOH . I 4 HOH A 41 2141 91 HOH HOH . I 4 HOH A 42 2142 149 HOH HOH . I 4 HOH A 43 2143 127 HOH HOH . I 4 HOH A 44 2144 18 HOH HOH . I 4 HOH A 45 2145 54 HOH HOH . I 4 HOH A 46 2146 12 HOH HOH . I 4 HOH A 47 2147 53 HOH HOH . I 4 HOH A 48 2148 16 HOH HOH . I 4 HOH A 49 2149 128 HOH HOH . I 4 HOH A 50 2150 2 HOH HOH . I 4 HOH A 51 2151 123 HOH HOH . I 4 HOH A 52 2152 66 HOH HOH . I 4 HOH A 53 2153 108 HOH HOH . I 4 HOH A 54 2154 13 HOH HOH . I 4 HOH A 55 2155 156 HOH HOH . I 4 HOH A 56 2156 61 HOH HOH . I 4 HOH A 57 2157 111 HOH HOH . I 4 HOH A 58 2158 17 HOH HOH . I 4 HOH A 59 2159 55 HOH HOH . I 4 HOH A 60 2160 136 HOH HOH . I 4 HOH A 61 2161 81 HOH HOH . I 4 HOH A 62 2162 99 HOH HOH . I 4 HOH A 63 2163 70 HOH HOH . I 4 HOH A 64 2164 165 HOH HOH . I 4 HOH A 65 2165 120 HOH HOH . I 4 HOH A 66 2166 76 HOH HOH . I 4 HOH A 67 2167 57 HOH HOH . I 4 HOH A 68 2168 73 HOH HOH . I 4 HOH A 69 2169 90 HOH HOH . I 4 HOH A 70 2170 135 HOH HOH . I 4 HOH A 71 2171 162 HOH HOH . I 4 HOH A 72 2172 160 HOH HOH . I 4 HOH A 73 2173 150 HOH HOH . I 4 HOH A 74 2174 68 HOH HOH . J 4 HOH B 1 2101 40 HOH HOH . J 4 HOH B 2 2102 119 HOH HOH . J 4 HOH B 3 2103 39 HOH HOH . J 4 HOH B 4 2104 42 HOH HOH . J 4 HOH B 5 2105 89 HOH HOH . J 4 HOH B 6 2106 97 HOH HOH . J 4 HOH B 7 2107 25 HOH HOH . J 4 HOH B 8 2108 20 HOH HOH . J 4 HOH B 9 2109 147 HOH HOH . J 4 HOH B 10 2110 125 HOH HOH . J 4 HOH B 11 2111 131 HOH HOH . J 4 HOH B 12 2112 36 HOH HOH . J 4 HOH B 13 2113 19 HOH HOH . J 4 HOH B 14 2114 106 HOH HOH . J 4 HOH B 15 2115 52 HOH HOH . J 4 HOH B 16 2116 43 HOH HOH . J 4 HOH B 17 2117 85 HOH HOH . J 4 HOH B 18 2118 133 HOH HOH . J 4 HOH B 19 2119 110 HOH HOH . J 4 HOH B 20 2120 114 HOH HOH . J 4 HOH B 21 2121 96 HOH HOH . J 4 HOH B 22 2122 132 HOH HOH . J 4 HOH B 23 2123 138 HOH HOH . J 4 HOH B 24 2124 8 HOH HOH . J 4 HOH B 25 2125 140 HOH HOH . J 4 HOH B 26 2126 56 HOH HOH . J 4 HOH B 27 2127 117 HOH HOH . J 4 HOH B 28 2128 116 HOH HOH . J 4 HOH B 29 2129 27 HOH HOH . J 4 HOH B 30 2130 142 HOH HOH . J 4 HOH B 31 2131 65 HOH HOH . J 4 HOH B 32 2132 63 HOH HOH . J 4 HOH B 33 2133 11 HOH HOH . J 4 HOH B 34 2134 32 HOH HOH . J 4 HOH B 35 2135 134 HOH HOH . J 4 HOH B 36 2136 28 HOH HOH . J 4 HOH B 37 2137 4 HOH HOH . J 4 HOH B 38 2138 10 HOH HOH . J 4 HOH B 39 2139 154 HOH HOH . J 4 HOH B 40 2140 72 HOH HOH . J 4 HOH B 41 2141 5 HOH HOH . J 4 HOH B 42 2142 50 HOH HOH . J 4 HOH B 43 2143 71 HOH HOH . J 4 HOH B 44 2144 44 HOH HOH . J 4 HOH B 45 2145 115 HOH HOH . J 4 HOH B 46 2146 59 HOH HOH . J 4 HOH B 47 2147 122 HOH HOH . J 4 HOH B 48 2148 7 HOH HOH . J 4 HOH B 49 2149 24 HOH HOH . J 4 HOH B 50 2150 14 HOH HOH . J 4 HOH B 51 2151 112 HOH HOH . J 4 HOH B 52 2152 75 HOH HOH . J 4 HOH B 53 2153 48 HOH HOH . J 4 HOH B 54 2154 9 HOH HOH . J 4 HOH B 55 2155 98 HOH HOH . J 4 HOH B 56 2156 3 HOH HOH . J 4 HOH B 57 2157 107 HOH HOH . J 4 HOH B 58 2158 74 HOH HOH . J 4 HOH B 59 2159 78 HOH HOH . J 4 HOH B 60 2160 51 HOH HOH . J 4 HOH B 61 2161 129 HOH HOH . J 4 HOH B 62 2162 38 HOH HOH . J 4 HOH B 63 2163 84 HOH HOH . J 4 HOH B 64 2164 80 HOH HOH . J 4 HOH B 65 2165 92 HOH HOH . J 4 HOH B 66 2166 49 HOH HOH . J 4 HOH B 67 2167 15 HOH HOH . J 4 HOH B 68 2168 153 HOH HOH . J 4 HOH B 69 2169 41 HOH HOH . J 4 HOH B 70 2170 148 HOH HOH . J 4 HOH B 71 2171 100 HOH HOH . J 4 HOH B 72 2172 83 HOH HOH . J 4 HOH B 73 2173 143 HOH HOH . J 4 HOH B 74 2174 109 HOH HOH . J 4 HOH B 75 2175 67 HOH HOH . J 4 HOH B 76 2176 69 HOH HOH . J 4 HOH B 77 2177 94 HOH HOH . J 4 HOH B 78 2178 137 HOH HOH . J 4 HOH B 79 2179 146 HOH HOH . J 4 HOH B 80 2180 145 HOH HOH . J 4 HOH B 81 2181 139 HOH HOH . J 4 HOH B 82 2182 152 HOH HOH . J 4 HOH B 83 2183 158 HOH HOH . J 4 HOH B 84 2184 124 HOH HOH . J 4 HOH B 85 2185 159 HOH HOH . J 4 HOH B 86 2186 103 HOH HOH . J 4 HOH B 87 2187 88 HOH HOH . J 4 HOH B 88 2188 105 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 73.314 _atom_site.Cartn_y 9.54 _atom_site.Cartn_z 0.893 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 18.44 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 2002 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #