data_5B3U # _model_server_result.job_id XwrqjZVt9x3OiaIJL7QrEw _model_server_result.datetime_utc '2024-12-26 12:56:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5b3u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":403}' # _entry.id 5B3U # _exptl.entry_id 5B3U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5B3U _cell.length_a 59.091 _cell.length_b 85.562 _cell.length_c 135.026 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5B3U _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 340 n n P O2 PO4 sing 341 n n P O3 PO4 sing 342 n n P O4 PO4 sing 343 n n # _atom_sites.entry_id 5B3U _atom_sites.fract_transf_matrix[1][1] 0.016923 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011687 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007406 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 401 1 PO4 PO4 . D 2 PO4 A 1 402 3 PO4 PO4 . E 3 NAP B 1 401 1 NAP NAP . F 2 PO4 B 1 402 2 PO4 PO4 . G 2 PO4 B 1 403 4 PO4 PO4 . H 4 HOH A 1 501 16 HOH HOH . H 4 HOH A 2 502 4 HOH HOH . H 4 HOH A 3 503 41 HOH HOH . H 4 HOH A 4 504 31 HOH HOH . H 4 HOH A 5 505 10 HOH HOH . H 4 HOH A 6 506 3 HOH HOH . H 4 HOH A 7 507 2 HOH HOH . H 4 HOH A 8 508 14 HOH HOH . H 4 HOH A 9 509 13 HOH HOH . H 4 HOH A 10 510 12 HOH HOH . H 4 HOH A 11 511 43 HOH HOH . H 4 HOH A 12 512 34 HOH HOH . H 4 HOH A 13 513 35 HOH HOH . H 4 HOH A 14 514 15 HOH HOH . H 4 HOH A 15 515 59 HOH HOH . H 4 HOH A 16 516 32 HOH HOH . H 4 HOH A 17 517 36 HOH HOH . H 4 HOH A 18 518 30 HOH HOH . H 4 HOH A 19 519 25 HOH HOH . H 4 HOH A 20 520 37 HOH HOH . H 4 HOH A 21 521 8 HOH HOH . H 4 HOH A 22 522 21 HOH HOH . H 4 HOH A 23 523 24 HOH HOH . H 4 HOH A 24 524 11 HOH HOH . H 4 HOH A 25 525 5 HOH HOH . H 4 HOH A 26 526 26 HOH HOH . H 4 HOH A 27 527 18 HOH HOH . H 4 HOH A 28 528 22 HOH HOH . H 4 HOH A 29 529 33 HOH HOH . H 4 HOH A 30 530 23 HOH HOH . H 4 HOH A 31 531 6 HOH HOH . I 4 HOH B 1 501 51 HOH HOH . I 4 HOH B 2 502 47 HOH HOH . I 4 HOH B 3 503 20 HOH HOH . I 4 HOH B 4 504 19 HOH HOH . I 4 HOH B 5 505 57 HOH HOH . I 4 HOH B 6 506 55 HOH HOH . I 4 HOH B 7 507 50 HOH HOH . I 4 HOH B 8 508 48 HOH HOH . I 4 HOH B 9 509 56 HOH HOH . I 4 HOH B 10 510 38 HOH HOH . I 4 HOH B 11 511 53 HOH HOH . I 4 HOH B 12 512 40 HOH HOH . I 4 HOH B 13 513 58 HOH HOH . I 4 HOH B 14 514 29 HOH HOH . I 4 HOH B 15 515 7 HOH HOH . I 4 HOH B 16 516 39 HOH HOH . I 4 HOH B 17 517 27 HOH HOH . I 4 HOH B 18 518 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . G 2 15.812 69.31 25.597 1 30 ? P PO4 403 B 1 HETATM 2 O O1 PO4 . . . G 2 16.686 69.528 24.433 1 30 ? O1 PO4 403 B 1 HETATM 3 O O2 PO4 . . . G 2 14.543 68.645 25.211 1 30 ? O2 PO4 403 B 1 HETATM 4 O O3 PO4 . . . G 2 16.491 68.404 26.535 1 30 ? O3 PO4 403 B 1 HETATM 5 O O4 PO4 . . . G 2 15.565 70.616 26.236 1 30 ? O4 PO4 403 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #