data_5B46 # _model_server_result.job_id JbkbmfaxbQNnEYl8xBbujw _model_server_result.datetime_utc '2025-03-13 20:54:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5b46 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 5B46 # _exptl.entry_id 5B46 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5B46 _cell.length_a 101.889 _cell.length_b 205.048 _cell.length_c 126.988 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5B46 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 63.494 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 12 B CYS 12 1_555 C FE1 SF4 . B SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc2 B SG CYS 15 B CYS 15 1_555 C FE4 SF4 . B SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc3 B SG CYS 46 B CYS 46 1_555 C FE2 SF4 . B SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc4 B OD1 ASP 90 B ASP 90 1_555 E MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc5 B OD1 ASN 118 B ASN 118 1_555 E MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc6 B O VAL 120 B VAL 120 1_555 E MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc7 B SG CYS 197 B CYS 197 1_555 C FE3 SF4 . B SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc8 D O1A TPP . B TPP 402 1_555 E MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc9 D O3B TPP . B TPP 402 1_555 E MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5B46 _atom_sites.fract_transf_matrix[1][1] 0.009815 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004877 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007875 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SF4 B 1 401 3235 SF4 SF4 . D 4 TPP B 1 402 3236 TPP TPP . E 5 MG B 1 403 3237 MG MG . F 6 HOH A 1 701 21 HOH HOH . F 6 HOH A 2 702 22 HOH HOH . F 6 HOH A 3 703 49 HOH HOH . F 6 HOH A 4 704 241 HOH HOH . F 6 HOH A 5 705 115 HOH HOH . F 6 HOH A 6 706 156 HOH HOH . F 6 HOH A 7 707 61 HOH HOH . F 6 HOH A 8 708 258 HOH HOH . F 6 HOH A 9 709 113 HOH HOH . F 6 HOH A 10 710 200 HOH HOH . F 6 HOH A 11 711 214 HOH HOH . F 6 HOH A 12 712 186 HOH HOH . F 6 HOH A 13 713 130 HOH HOH . F 6 HOH A 14 714 244 HOH HOH . F 6 HOH A 15 715 149 HOH HOH . F 6 HOH A 16 716 67 HOH HOH . F 6 HOH A 17 717 30 HOH HOH . F 6 HOH A 18 718 53 HOH HOH . F 6 HOH A 19 719 172 HOH HOH . F 6 HOH A 20 720 236 HOH HOH . F 6 HOH A 21 721 7 HOH HOH . F 6 HOH A 22 722 78 HOH HOH . F 6 HOH A 23 723 20 HOH HOH . F 6 HOH A 24 724 42 HOH HOH . F 6 HOH A 25 725 232 HOH HOH . F 6 HOH A 26 726 18 HOH HOH . F 6 HOH A 27 727 8 HOH HOH . F 6 HOH A 28 728 35 HOH HOH . F 6 HOH A 29 729 243 HOH HOH . F 6 HOH A 30 730 217 HOH HOH . F 6 HOH A 31 731 168 HOH HOH . F 6 HOH A 32 732 220 HOH HOH . F 6 HOH A 33 733 154 HOH HOH . F 6 HOH A 34 734 226 HOH HOH . F 6 HOH A 35 735 93 HOH HOH . F 6 HOH A 36 736 182 HOH HOH . F 6 HOH A 37 737 216 HOH HOH . F 6 HOH A 38 738 2 HOH HOH . F 6 HOH A 39 739 148 HOH HOH . F 6 HOH A 40 740 133 HOH HOH . F 6 HOH A 41 741 16 HOH HOH . F 6 HOH A 42 742 109 HOH HOH . F 6 HOH A 43 743 185 HOH HOH . F 6 HOH A 44 744 151 HOH HOH . F 6 HOH A 45 745 205 HOH HOH . F 6 HOH A 46 746 89 HOH HOH . F 6 HOH A 47 747 201 HOH HOH . F 6 HOH A 48 748 152 HOH HOH . F 6 HOH A 49 749 11 HOH HOH . F 6 HOH A 50 750 4 HOH HOH . F 6 HOH A 51 751 229 HOH HOH . F 6 HOH A 52 752 91 HOH HOH . F 6 HOH A 53 753 106 HOH HOH . F 6 HOH A 54 754 57 HOH HOH . F 6 HOH A 55 755 128 HOH HOH . F 6 HOH A 56 756 81 HOH HOH . F 6 HOH A 57 757 60 HOH HOH . F 6 HOH A 58 758 158 HOH HOH . F 6 HOH A 59 759 178 HOH HOH . F 6 HOH A 60 760 3 HOH HOH . F 6 HOH A 61 761 132 HOH HOH . F 6 HOH A 62 762 124 HOH HOH . F 6 HOH A 63 763 6 HOH HOH . F 6 HOH A 64 764 165 HOH HOH . F 6 HOH A 65 765 160 HOH HOH . F 6 HOH A 66 766 145 HOH HOH . F 6 HOH A 67 767 222 HOH HOH . F 6 HOH A 68 768 228 HOH HOH . F 6 HOH A 69 769 75 HOH HOH . F 6 HOH A 70 770 144 HOH HOH . F 6 HOH A 71 771 234 HOH HOH . F 6 HOH A 72 772 112 HOH HOH . F 6 HOH A 73 773 38 HOH HOH . F 6 HOH A 74 774 259 HOH HOH . F 6 HOH A 75 775 26 HOH HOH . F 6 HOH A 76 776 28 HOH HOH . F 6 HOH A 77 777 76 HOH HOH . F 6 HOH A 78 778 10 HOH HOH . F 6 HOH A 79 779 44 HOH HOH . F 6 HOH A 80 780 1 HOH HOH . F 6 HOH A 81 781 118 HOH HOH . F 6 HOH A 82 782 224 HOH HOH . F 6 HOH A 83 783 101 HOH HOH . F 6 HOH A 84 784 13 HOH HOH . F 6 HOH A 85 785 73 HOH HOH . F 6 HOH A 86 786 131 HOH HOH . F 6 HOH A 87 787 65 HOH HOH . F 6 HOH A 88 788 54 HOH HOH . F 6 HOH A 89 789 117 HOH HOH . F 6 HOH A 90 790 51 HOH HOH . F 6 HOH A 91 791 86 HOH HOH . F 6 HOH A 92 792 120 HOH HOH . F 6 HOH A 93 793 62 HOH HOH . F 6 HOH A 94 794 52 HOH HOH . F 6 HOH A 95 795 5 HOH HOH . F 6 HOH A 96 796 235 HOH HOH . F 6 HOH A 97 797 95 HOH HOH . F 6 HOH A 98 798 48 HOH HOH . F 6 HOH A 99 799 191 HOH HOH . F 6 HOH A 100 800 68 HOH HOH . F 6 HOH A 101 801 254 HOH HOH . F 6 HOH A 102 802 103 HOH HOH . F 6 HOH A 103 803 82 HOH HOH . F 6 HOH A 104 804 77 HOH HOH . F 6 HOH A 105 805 187 HOH HOH . F 6 HOH A 106 806 162 HOH HOH . F 6 HOH A 107 807 257 HOH HOH . F 6 HOH A 108 808 166 HOH HOH . F 6 HOH A 109 809 245 HOH HOH . F 6 HOH A 110 810 230 HOH HOH . F 6 HOH A 111 811 249 HOH HOH . F 6 HOH A 112 812 47 HOH HOH . F 6 HOH A 113 813 183 HOH HOH . F 6 HOH A 114 814 137 HOH HOH . F 6 HOH A 115 815 108 HOH HOH . F 6 HOH A 116 816 97 HOH HOH . F 6 HOH A 117 817 231 HOH HOH . F 6 HOH A 118 818 157 HOH HOH . F 6 HOH A 119 819 239 HOH HOH . F 6 HOH A 120 820 238 HOH HOH . F 6 HOH A 121 821 155 HOH HOH . F 6 HOH A 122 822 242 HOH HOH . F 6 HOH A 123 823 139 HOH HOH . F 6 HOH A 124 824 153 HOH HOH . F 6 HOH A 125 825 114 HOH HOH . F 6 HOH A 126 826 83 HOH HOH . F 6 HOH A 127 827 79 HOH HOH . F 6 HOH A 128 828 223 HOH HOH . F 6 HOH A 129 829 173 HOH HOH . F 6 HOH A 130 830 72 HOH HOH . F 6 HOH A 131 831 129 HOH HOH . F 6 HOH A 132 832 207 HOH HOH . F 6 HOH A 133 833 136 HOH HOH . F 6 HOH A 134 834 159 HOH HOH . F 6 HOH A 135 835 169 HOH HOH . F 6 HOH A 136 836 227 HOH HOH . F 6 HOH A 137 837 127 HOH HOH . F 6 HOH A 138 838 206 HOH HOH . F 6 HOH A 139 839 134 HOH HOH . F 6 HOH A 140 840 110 HOH HOH . F 6 HOH A 141 841 240 HOH HOH . F 6 HOH A 142 842 263 HOH HOH . F 6 HOH A 143 843 50 HOH HOH . F 6 HOH A 144 844 87 HOH HOH . F 6 HOH A 145 845 116 HOH HOH . F 6 HOH A 146 846 219 HOH HOH . F 6 HOH A 147 847 58 HOH HOH . F 6 HOH A 148 848 34 HOH HOH . F 6 HOH A 149 849 146 HOH HOH . F 6 HOH A 150 850 256 HOH HOH . F 6 HOH A 151 851 80 HOH HOH . F 6 HOH A 152 852 180 HOH HOH . F 6 HOH A 153 853 184 HOH HOH . F 6 HOH A 154 854 17 HOH HOH . F 6 HOH A 155 855 126 HOH HOH . F 6 HOH A 156 856 171 HOH HOH . F 6 HOH A 157 857 237 HOH HOH . F 6 HOH A 158 858 99 HOH HOH . F 6 HOH A 159 859 92 HOH HOH . F 6 HOH A 160 860 189 HOH HOH . F 6 HOH A 161 861 121 HOH HOH . F 6 HOH A 162 862 175 HOH HOH . F 6 HOH A 163 863 260 HOH HOH . F 6 HOH A 164 864 104 HOH HOH . F 6 HOH A 165 865 138 HOH HOH . F 6 HOH A 166 866 197 HOH HOH . F 6 HOH A 167 867 105 HOH HOH . F 6 HOH A 168 868 31 HOH HOH . F 6 HOH A 169 869 225 HOH HOH . F 6 HOH A 170 870 96 HOH HOH . F 6 HOH A 171 871 195 HOH HOH . F 6 HOH A 172 872 19 HOH HOH . F 6 HOH A 173 873 125 HOH HOH . F 6 HOH A 174 874 192 HOH HOH . F 6 HOH A 175 875 85 HOH HOH . F 6 HOH A 176 876 84 HOH HOH . F 6 HOH A 177 877 193 HOH HOH . F 6 HOH A 178 878 94 HOH HOH . F 6 HOH A 179 879 90 HOH HOH . F 6 HOH A 180 880 23 HOH HOH . F 6 HOH A 181 881 24 HOH HOH . F 6 HOH A 182 882 45 HOH HOH . F 6 HOH A 183 883 248 HOH HOH . F 6 HOH A 184 884 209 HOH HOH . F 6 HOH A 185 885 14 HOH HOH . F 6 HOH A 186 886 203 HOH HOH . F 6 HOH A 187 887 170 HOH HOH . F 6 HOH A 188 888 253 HOH HOH . F 6 HOH A 189 889 181 HOH HOH . F 6 HOH A 190 890 179 HOH HOH . F 6 HOH A 191 891 262 HOH HOH . F 6 HOH A 192 892 251 HOH HOH . G 6 HOH B 1 501 211 HOH HOH . G 6 HOH B 2 502 198 HOH HOH . G 6 HOH B 3 503 213 HOH HOH . G 6 HOH B 4 504 204 HOH HOH . G 6 HOH B 5 505 12 HOH HOH . G 6 HOH B 6 506 221 HOH HOH . G 6 HOH B 7 507 33 HOH HOH . G 6 HOH B 8 508 233 HOH HOH . G 6 HOH B 9 509 15 HOH HOH . G 6 HOH B 10 510 188 HOH HOH . G 6 HOH B 11 511 98 HOH HOH . G 6 HOH B 12 512 66 HOH HOH . G 6 HOH B 13 513 102 HOH HOH . G 6 HOH B 14 514 255 HOH HOH . G 6 HOH B 15 515 46 HOH HOH . G 6 HOH B 16 516 25 HOH HOH . G 6 HOH B 17 517 142 HOH HOH . G 6 HOH B 18 518 122 HOH HOH . G 6 HOH B 19 519 9 HOH HOH . G 6 HOH B 20 520 218 HOH HOH . G 6 HOH B 21 521 59 HOH HOH . G 6 HOH B 22 522 119 HOH HOH . G 6 HOH B 23 523 135 HOH HOH . G 6 HOH B 24 524 210 HOH HOH . G 6 HOH B 25 525 150 HOH HOH . G 6 HOH B 26 526 27 HOH HOH . G 6 HOH B 27 527 161 HOH HOH . G 6 HOH B 28 528 43 HOH HOH . G 6 HOH B 29 529 194 HOH HOH . G 6 HOH B 30 530 250 HOH HOH . G 6 HOH B 31 531 100 HOH HOH . G 6 HOH B 32 532 29 HOH HOH . G 6 HOH B 33 533 147 HOH HOH . G 6 HOH B 34 534 39 HOH HOH . G 6 HOH B 35 535 202 HOH HOH . G 6 HOH B 36 536 190 HOH HOH . G 6 HOH B 37 537 64 HOH HOH . G 6 HOH B 38 538 246 HOH HOH . G 6 HOH B 39 539 41 HOH HOH . G 6 HOH B 40 540 199 HOH HOH . G 6 HOH B 41 541 40 HOH HOH . G 6 HOH B 42 542 36 HOH HOH . G 6 HOH B 43 543 107 HOH HOH . G 6 HOH B 44 544 70 HOH HOH . G 6 HOH B 45 545 261 HOH HOH . G 6 HOH B 46 546 88 HOH HOH . G 6 HOH B 47 547 176 HOH HOH . G 6 HOH B 48 548 141 HOH HOH . G 6 HOH B 49 549 69 HOH HOH . G 6 HOH B 50 550 123 HOH HOH . G 6 HOH B 51 551 177 HOH HOH . G 6 HOH B 52 552 56 HOH HOH . G 6 HOH B 53 553 215 HOH HOH . G 6 HOH B 54 554 174 HOH HOH . G 6 HOH B 55 555 196 HOH HOH . G 6 HOH B 56 556 71 HOH HOH . G 6 HOH B 57 557 167 HOH HOH . G 6 HOH B 58 558 32 HOH HOH . G 6 HOH B 59 559 74 HOH HOH . G 6 HOH B 60 560 143 HOH HOH . G 6 HOH B 61 561 140 HOH HOH . G 6 HOH B 62 562 208 HOH HOH . G 6 HOH B 63 563 212 HOH HOH . G 6 HOH B 64 564 163 HOH HOH . G 6 HOH B 65 565 111 HOH HOH . G 6 HOH B 66 566 55 HOH HOH . G 6 HOH B 67 567 164 HOH HOH . G 6 HOH B 68 568 37 HOH HOH . G 6 HOH B 69 569 63 HOH HOH . G 6 HOH B 70 570 247 HOH HOH . G 6 HOH B 71 571 252 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 6.832 _atom_site.Cartn_y -15.892 _atom_site.Cartn_z 16.258 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 52.92 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 403 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #