data_5B4T
#
_model_server_result.job_id            NmPqKhPi34PhPAum1UuOrQ 
_model_server_result.datetime_utc      '2024-11-17 09:48:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5b4t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    5B4T 
#
_exptl.entry_id    5B4T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5B4T 
_cell.length_a            62.78 
_cell.length_b            62.78 
_cell.length_c            119.49 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5B4T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 62.78 62.78 0 
3 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
4 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 62.78 62.78 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OXT ARG 260 A ARG 260 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc2 A OXT ARG 260 A ARG 260 1_555 D NA NA . A NA 303 8_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc3 D NA NA . A NA 303 1_555 E O HOH . A HOH 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc4 D NA NA . A NA 303 1_555 E O HOH . A HOH 429 8_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc5 D NA NA . A NA 303 1_555 E O HOH . A HOH 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc6 D NA NA . A NA 303 1_555 E O HOH . A HOH 437 8_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5B4T 
_atom_sites.fract_transf_matrix[1][1]    0.015929 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015929 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008369 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAD A 1 301 301 NAD NAD . 
C 3 3HR A 1 302 302 3HR 3HR . 
D 4 NA A 1 303 303 NA NA . 
E 5 HOH A 1 401 517 HOH HOH . 
E 5 HOH A 2 402 544 HOH HOH . 
E 5 HOH A 3 403 573 HOH HOH . 
E 5 HOH A 4 404 418 HOH HOH . 
E 5 HOH A 5 405 605 HOH HOH . 
E 5 HOH A 6 406 713 HOH HOH . 
E 5 HOH A 7 407 624 HOH HOH . 
E 5 HOH A 8 408 608 HOH HOH . 
E 5 HOH A 9 409 419 HOH HOH . 
E 5 HOH A 10 410 558 HOH HOH . 
E 5 HOH A 11 411 469 HOH HOH . 
E 5 HOH A 12 412 466 HOH HOH . 
E 5 HOH A 13 413 556 HOH HOH . 
E 5 HOH A 14 414 563 HOH HOH . 
E 5 HOH A 15 415 470 HOH HOH . 
E 5 HOH A 16 416 415 HOH HOH . 
E 5 HOH A 17 417 543 HOH HOH . 
E 5 HOH A 18 418 529 HOH HOH . 
E 5 HOH A 19 419 564 HOH HOH . 
E 5 HOH A 20 420 476 HOH HOH . 
E 5 HOH A 21 421 566 HOH HOH . 
E 5 HOH A 22 422 603 HOH HOH . 
E 5 HOH A 23 423 463 HOH HOH . 
E 5 HOH A 24 424 493 HOH HOH . 
E 5 HOH A 25 425 474 HOH HOH . 
E 5 HOH A 26 426 497 HOH HOH . 
E 5 HOH A 27 427 506 HOH HOH . 
E 5 HOH A 28 428 548 HOH HOH . 
E 5 HOH A 29 429 427 HOH HOH . 
E 5 HOH A 30 430 449 HOH HOH . 
E 5 HOH A 31 431 511 HOH HOH . 
E 5 HOH A 32 432 519 HOH HOH . 
E 5 HOH A 33 433 578 HOH HOH . 
E 5 HOH A 34 434 447 HOH HOH . 
E 5 HOH A 35 435 413 HOH HOH . 
E 5 HOH A 36 436 446 HOH HOH . 
E 5 HOH A 37 437 430 HOH HOH . 
E 5 HOH A 38 438 425 HOH HOH . 
E 5 HOH A 39 439 508 HOH HOH . 
E 5 HOH A 40 440 514 HOH HOH . 
E 5 HOH A 41 441 443 HOH HOH . 
E 5 HOH A 42 442 441 HOH HOH . 
E 5 HOH A 43 443 473 HOH HOH . 
E 5 HOH A 44 444 432 HOH HOH . 
E 5 HOH A 45 445 486 HOH HOH . 
E 5 HOH A 46 446 515 HOH HOH . 
E 5 HOH A 47 447 547 HOH HOH . 
E 5 HOH A 48 448 527 HOH HOH . 
E 5 HOH A 49 449 562 HOH HOH . 
E 5 HOH A 50 450 411 HOH HOH . 
E 5 HOH A 51 451 706 HOH HOH . 
E 5 HOH A 52 452 420 HOH HOH . 
E 5 HOH A 53 453 484 HOH HOH . 
E 5 HOH A 54 454 404 HOH HOH . 
E 5 HOH A 55 455 416 HOH HOH . 
E 5 HOH A 56 456 453 HOH HOH . 
E 5 HOH A 57 457 490 HOH HOH . 
E 5 HOH A 58 458 600 HOH HOH . 
E 5 HOH A 59 459 478 HOH HOH . 
E 5 HOH A 60 460 534 HOH HOH . 
E 5 HOH A 61 461 406 HOH HOH . 
E 5 HOH A 62 462 499 HOH HOH . 
E 5 HOH A 63 463 412 HOH HOH . 
E 5 HOH A 64 464 467 HOH HOH . 
E 5 HOH A 65 465 642 HOH HOH . 
E 5 HOH A 66 466 673 HOH HOH . 
E 5 HOH A 67 467 536 HOH HOH . 
E 5 HOH A 68 468 414 HOH HOH . 
E 5 HOH A 69 469 482 HOH HOH . 
E 5 HOH A 70 470 424 HOH HOH . 
E 5 HOH A 71 471 457 HOH HOH . 
E 5 HOH A 72 472 681 HOH HOH . 
E 5 HOH A 73 473 407 HOH HOH . 
E 5 HOH A 74 474 401 HOH HOH . 
E 5 HOH A 75 475 452 HOH HOH . 
E 5 HOH A 76 476 510 HOH HOH . 
E 5 HOH A 77 477 472 HOH HOH . 
E 5 HOH A 78 478 403 HOH HOH . 
E 5 HOH A 79 479 509 HOH HOH . 
E 5 HOH A 80 480 434 HOH HOH . 
E 5 HOH A 81 481 489 HOH HOH . 
E 5 HOH A 82 482 459 HOH HOH . 
E 5 HOH A 83 483 451 HOH HOH . 
E 5 HOH A 84 484 487 HOH HOH . 
E 5 HOH A 85 485 409 HOH HOH . 
E 5 HOH A 86 486 477 HOH HOH . 
E 5 HOH A 87 487 471 HOH HOH . 
E 5 HOH A 88 488 455 HOH HOH . 
E 5 HOH A 89 489 491 HOH HOH . 
E 5 HOH A 90 490 687 HOH HOH . 
E 5 HOH A 91 491 504 HOH HOH . 
E 5 HOH A 92 492 426 HOH HOH . 
E 5 HOH A 93 493 450 HOH HOH . 
E 5 HOH A 94 494 405 HOH HOH . 
E 5 HOH A 95 495 436 HOH HOH . 
E 5 HOH A 96 496 481 HOH HOH . 
E 5 HOH A 97 497 721 HOH HOH . 
E 5 HOH A 98 498 435 HOH HOH . 
E 5 HOH A 99 499 408 HOH HOH . 
E 5 HOH A 100 500 682 HOH HOH . 
E 5 HOH A 101 501 512 HOH HOH . 
E 5 HOH A 102 502 442 HOH HOH . 
E 5 HOH A 103 503 507 HOH HOH . 
E 5 HOH A 104 504 518 HOH HOH . 
E 5 HOH A 105 505 677 HOH HOH . 
E 5 HOH A 106 506 570 HOH HOH . 
E 5 HOH A 107 507 557 HOH HOH . 
E 5 HOH A 108 508 494 HOH HOH . 
E 5 HOH A 109 509 588 HOH HOH . 
E 5 HOH A 110 510 440 HOH HOH . 
E 5 HOH A 111 511 462 HOH HOH . 
E 5 HOH A 112 512 454 HOH HOH . 
E 5 HOH A 113 513 458 HOH HOH . 
E 5 HOH A 114 514 465 HOH HOH . 
E 5 HOH A 115 515 433 HOH HOH . 
E 5 HOH A 116 516 590 HOH HOH . 
E 5 HOH A 117 517 568 HOH HOH . 
E 5 HOH A 118 518 428 HOH HOH . 
E 5 HOH A 119 519 656 HOH HOH . 
E 5 HOH A 120 520 715 HOH HOH . 
E 5 HOH A 121 521 722 HOH HOH . 
E 5 HOH A 122 522 560 HOH HOH . 
E 5 HOH A 123 523 623 HOH HOH . 
E 5 HOH A 124 524 423 HOH HOH . 
E 5 HOH A 125 525 581 HOH HOH . 
E 5 HOH A 126 526 619 HOH HOH . 
E 5 HOH A 127 527 495 HOH HOH . 
E 5 HOH A 128 528 422 HOH HOH . 
E 5 HOH A 129 529 502 HOH HOH . 
E 5 HOH A 130 530 475 HOH HOH . 
E 5 HOH A 131 531 437 HOH HOH . 
E 5 HOH A 132 532 708 HOH HOH . 
E 5 HOH A 133 533 553 HOH HOH . 
E 5 HOH A 134 534 567 HOH HOH . 
E 5 HOH A 135 535 438 HOH HOH . 
E 5 HOH A 136 536 501 HOH HOH . 
E 5 HOH A 137 537 694 HOH HOH . 
E 5 HOH A 138 538 456 HOH HOH . 
E 5 HOH A 139 539 402 HOH HOH . 
E 5 HOH A 140 540 410 HOH HOH . 
E 5 HOH A 141 541 448 HOH HOH . 
E 5 HOH A 142 542 464 HOH HOH . 
E 5 HOH A 143 543 585 HOH HOH . 
E 5 HOH A 144 544 592 HOH HOH . 
E 5 HOH A 145 545 500 HOH HOH . 
E 5 HOH A 146 546 537 HOH HOH . 
E 5 HOH A 147 547 559 HOH HOH . 
E 5 HOH A 148 548 421 HOH HOH . 
E 5 HOH A 149 549 480 HOH HOH . 
E 5 HOH A 150 550 572 HOH HOH . 
E 5 HOH A 151 551 538 HOH HOH . 
E 5 HOH A 152 552 569 HOH HOH . 
E 5 HOH A 153 553 431 HOH HOH . 
E 5 HOH A 154 554 539 HOH HOH . 
E 5 HOH A 155 555 576 HOH HOH . 
E 5 HOH A 156 556 552 HOH HOH . 
E 5 HOH A 157 557 461 HOH HOH . 
E 5 HOH A 158 558 574 HOH HOH . 
E 5 HOH A 159 559 692 HOH HOH . 
E 5 HOH A 160 560 445 HOH HOH . 
E 5 HOH A 161 561 525 HOH HOH . 
E 5 HOH A 162 562 468 HOH HOH . 
E 5 HOH A 163 563 429 HOH HOH . 
E 5 HOH A 164 564 554 HOH HOH . 
E 5 HOH A 165 565 598 HOH HOH . 
E 5 HOH A 166 566 589 HOH HOH . 
E 5 HOH A 167 567 417 HOH HOH . 
E 5 HOH A 168 568 565 HOH HOH . 
E 5 HOH A 169 569 685 HOH HOH . 
E 5 HOH A 170 570 542 HOH HOH . 
E 5 HOH A 171 571 571 HOH HOH . 
E 5 HOH A 172 572 520 HOH HOH . 
E 5 HOH A 173 573 555 HOH HOH . 
E 5 HOH A 174 574 513 HOH HOH . 
E 5 HOH A 175 575 551 HOH HOH . 
E 5 HOH A 176 576 676 HOH HOH . 
E 5 HOH A 177 577 533 HOH HOH . 
E 5 HOH A 178 578 516 HOH HOH . 
E 5 HOH A 179 579 630 HOH HOH . 
E 5 HOH A 180 580 550 HOH HOH . 
E 5 HOH A 181 581 701 HOH HOH . 
E 5 HOH A 182 582 439 HOH HOH . 
E 5 HOH A 183 583 530 HOH HOH . 
E 5 HOH A 184 584 488 HOH HOH . 
E 5 HOH A 185 585 492 HOH HOH . 
E 5 HOH A 186 586 709 HOH HOH . 
E 5 HOH A 187 587 532 HOH HOH . 
E 5 HOH A 188 588 683 HOH HOH . 
E 5 HOH A 189 589 707 HOH HOH . 
E 5 HOH A 190 590 596 HOH HOH . 
E 5 HOH A 191 591 711 HOH HOH . 
E 5 HOH A 192 592 546 HOH HOH . 
E 5 HOH A 193 593 485 HOH HOH . 
E 5 HOH A 194 594 669 HOH HOH . 
E 5 HOH A 195 595 496 HOH HOH . 
E 5 HOH A 196 596 705 HOH HOH . 
E 5 HOH A 197 597 579 HOH HOH . 
E 5 HOH A 198 598 670 HOH HOH . 
E 5 HOH A 199 599 645 HOH HOH . 
E 5 HOH A 200 600 704 HOH HOH . 
E 5 HOH A 201 601 444 HOH HOH . 
E 5 HOH A 202 602 594 HOH HOH . 
E 5 HOH A 203 603 460 HOH HOH . 
E 5 HOH A 204 604 702 HOH HOH . 
E 5 HOH A 205 605 526 HOH HOH . 
E 5 HOH A 206 606 505 HOH HOH . 
E 5 HOH A 207 607 524 HOH HOH . 
E 5 HOH A 208 608 535 HOH HOH . 
E 5 HOH A 209 609 540 HOH HOH . 
E 5 HOH A 210 610 593 HOH HOH . 
E 5 HOH A 211 611 597 HOH HOH . 
E 5 HOH A 212 612 531 HOH HOH . 
E 5 HOH A 213 613 549 HOH HOH . 
E 5 HOH A 214 614 498 HOH HOH . 
E 5 HOH A 215 615 693 HOH HOH . 
E 5 HOH A 216 616 521 HOH HOH . 
E 5 HOH A 217 617 674 HOH HOH . 
E 5 HOH A 218 618 675 HOH HOH . 
E 5 HOH A 219 619 714 HOH HOH . 
E 5 HOH A 220 620 712 HOH HOH . 
E 5 HOH A 221 621 595 HOH HOH . 
E 5 HOH A 222 622 523 HOH HOH . 
E 5 HOH A 223 623 644 HOH HOH . 
E 5 HOH A 224 624 654 HOH HOH . 
E 5 HOH A 225 625 684 HOH HOH . 
E 5 HOH A 226 626 672 HOH HOH . 
E 5 HOH A 227 627 483 HOH HOH . 
E 5 HOH A 228 628 703 HOH HOH . 
E 5 HOH A 229 629 545 HOH HOH . 
E 5 HOH A 230 630 691 HOH HOH . 
E 5 HOH A 231 631 582 HOH HOH . 
E 5 HOH A 232 632 679 HOH HOH . 
E 5 HOH A 233 633 710 HOH HOH . 
E 5 HOH A 234 634 680 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               24.759 
_atom_site.Cartn_y               38.019 
_atom_site.Cartn_z               0 
_atom_site.occupancy             0.5 
_atom_site.B_iso_or_equiv        4.68 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           303 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#