data_5B4Y
#
_model_server_result.job_id            cU0QSQadnwbWV2Tk4flL5Q 
_model_server_result.datetime_utc      '2025-08-30 23:58:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5b4y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":3002}' 
#
_entry.id    5B4Y 
#
_exptl.entry_id    5B4Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5B4Y 
_cell.length_a            31.162 
_cell.length_b            41.78 
_cell.length_c            55.063 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5B4Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 8 B CYS 46 1_555 A SG CYS 20 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 A SG CYS 15 B CYS 53 1_555 A SG CYS 33 B CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? 
disulf ? disulf3 A SG CYS 27 B CYS 65 1_555 A SG CYS 42 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
disulf ? disulf4 A SG CYS 47 B CYS 85 1_555 A SG CYS 59 B CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf5 A SG CYS 54 B CYS 92 1_555 A SG CYS 72 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf6 A SG CYS 66 B CYS 104 1_555 A SG CYS 83 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc1 A O TRP 25 B TRP 63 1_555 B CA CA . B CA 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc2 A OD2 ASP 28 B ASP 66 1_555 B CA CA . B CA 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
metalc ? metalc3 A O ASP 30 B ASP 68 1_555 B CA CA . B CA 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc4 A OD2 ASP 32 B ASP 70 1_555 B CA CA . B CA 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc5 A OD2 ASP 38 B ASP 76 1_555 B CA CA . B CA 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc6 A OE2 GLU 39 B GLU 77 1_555 B CA CA . B CA 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc7 A O TRP 64 B TRP 102 1_555 C CA CA . B CA 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc8 A OD2 ASP 67 B ASP 105 1_555 C CA CA . B CA 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? 
metalc ? metalc9 A O GLU 69 B GLU 107 1_555 C CA CA . B CA 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc10 A OE1 GLU 71 B GLU 109 1_555 C CA CA . B CA 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc11 A OD2 ASP 77 B ASP 115 1_555 C CA CA . B CA 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? 
metalc ? metalc12 A OE2 GLU 78 B GLU 116 1_555 C CA CA . B CA 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5B4Y 
_atom_sites.fract_transf_matrix[1][1]    0.03209 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023935 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018161 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA B 1 3001 3001 CA CA . 
C 2 CA B 1 3002 3002 CA CA . 
D 3 HOH B 1 3101 4028 HOH HOH . 
D 3 HOH B 2 3102 4035 HOH HOH . 
D 3 HOH B 3 3103 4011 HOH HOH . 
D 3 HOH B 4 3104 4049 HOH HOH . 
D 3 HOH B 5 3105 4012 HOH HOH . 
D 3 HOH B 6 3106 4038 HOH HOH . 
D 3 HOH B 7 3107 4006 HOH HOH . 
D 3 HOH B 8 3108 4002 HOH HOH . 
D 3 HOH B 9 3109 4005 HOH HOH . 
D 3 HOH B 10 3110 4029 HOH HOH . 
D 3 HOH B 11 3111 4021 HOH HOH . 
D 3 HOH B 12 3112 4008 HOH HOH . 
D 3 HOH B 13 3113 4045 HOH HOH . 
D 3 HOH B 14 3114 4016 HOH HOH . 
D 3 HOH B 15 3115 4040 HOH HOH . 
D 3 HOH B 16 3116 4007 HOH HOH . 
D 3 HOH B 17 3117 4025 HOH HOH . 
D 3 HOH B 18 3118 4022 HOH HOH . 
D 3 HOH B 19 3119 4030 HOH HOH . 
D 3 HOH B 20 3120 4010 HOH HOH . 
D 3 HOH B 21 3121 4032 HOH HOH . 
D 3 HOH B 22 3122 4027 HOH HOH . 
D 3 HOH B 23 3123 4020 HOH HOH . 
D 3 HOH B 24 3124 4009 HOH HOH . 
D 3 HOH B 25 3125 4042 HOH HOH . 
D 3 HOH B 26 3126 4017 HOH HOH . 
D 3 HOH B 27 3127 4046 HOH HOH . 
D 3 HOH B 28 3128 4003 HOH HOH . 
D 3 HOH B 29 3129 4018 HOH HOH . 
D 3 HOH B 30 3130 4037 HOH HOH . 
D 3 HOH B 31 3131 4048 HOH HOH . 
D 3 HOH B 32 3132 4041 HOH HOH . 
D 3 HOH B 33 3133 4014 HOH HOH . 
D 3 HOH B 34 3134 4043 HOH HOH . 
D 3 HOH B 35 3135 4044 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -34.475 
_atom_site.Cartn_y               6.383 
_atom_site.Cartn_z               -24.233 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        37.58 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           3002 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#