data_5B5K # _model_server_result.job_id LqdA3mBKJWSlq1Msd2f6hA _model_server_result.datetime_utc '2025-01-18 11:16:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5b5k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5B5K # _exptl.entry_id 5B5K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5B5K _cell.length_a 103.28 _cell.length_b 103.28 _cell.length_c 139.27 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5B5K _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 1 A CYS 22 1_555 A SG CYS 128 A CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 4 A CYS 25 1_555 A SG CYS 131 A CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 114 A CYS 135 1_555 A SG CYS 138 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 118 A CYS 139 1_555 A SG CYS 144 A CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 A SG CYS 161 A CYS 182 1_555 A SG CYS 212 A CYS 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? covale ? covale1 A ND2 ASN 183 A ASN 204 1_555 B C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 5B5K _atom_sites.fract_transf_matrix[1][1] 0.009682 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009682 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00718 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 301 500 NAG NAG . C 3 EPE A 1 302 510 EPE EPE . D 4 HOH A 1 401 23 HOH HOH . D 4 HOH A 2 402 28 HOH HOH . D 4 HOH A 3 403 16 HOH HOH . D 4 HOH A 4 404 20 HOH HOH . D 4 HOH A 5 405 6 HOH HOH . D 4 HOH A 6 406 26 HOH HOH . D 4 HOH A 7 407 22 HOH HOH . D 4 HOH A 8 408 8 HOH HOH . D 4 HOH A 9 409 4 HOH HOH . D 4 HOH A 10 410 10 HOH HOH . D 4 HOH A 11 411 9 HOH HOH . D 4 HOH A 12 412 14 HOH HOH . D 4 HOH A 13 413 12 HOH HOH . D 4 HOH A 14 414 25 HOH HOH . D 4 HOH A 15 415 18 HOH HOH . D 4 HOH A 16 416 15 HOH HOH . D 4 HOH A 17 417 2 HOH HOH . D 4 HOH A 18 418 19 HOH HOH . D 4 HOH A 19 419 11 HOH HOH . D 4 HOH A 20 420 1 HOH HOH . D 4 HOH A 21 421 13 HOH HOH . D 4 HOH A 22 422 7 HOH HOH . D 4 HOH A 23 423 24 HOH HOH . D 4 HOH A 24 424 3 HOH HOH . D 4 HOH A 25 425 5 HOH HOH . D 4 HOH A 26 426 27 HOH HOH . D 4 HOH A 27 427 17 HOH HOH . D 4 HOH A 28 428 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . C 3 24.334 36.673 20.713 1 58.33 ? N1 EPE 302 A 1 HETATM 2 C C2 EPE . . . C 3 24.012 37.86 21.519 1 58.56 ? C2 EPE 302 A 1 HETATM 3 C C3 EPE . . . C 3 25.066 38.96 21.402 1 57.38 ? C3 EPE 302 A 1 HETATM 4 N N4 EPE . . . C 3 26.387 38.573 20.916 1 60.67 ? N4 EPE 302 A 1 HETATM 5 C C5 EPE . . . C 3 26.7 37.193 20.578 1 58.99 ? C5 EPE 302 A 1 HETATM 6 C C6 EPE . . . C 3 25.67 36.205 21.096 1 58.57 ? C6 EPE 302 A 1 HETATM 7 C C7 EPE . . . C 3 27.254 39.636 20.429 1 57.17 ? C7 EPE 302 A 1 HETATM 8 C C8 EPE . . . C 3 28.662 39.169 20.057 1 60.91 ? C8 EPE 302 A 1 HETATM 9 O O8 EPE . . . C 3 29.456 40.267 19.662 1 61.26 ? O8 EPE 302 A 1 HETATM 10 C C9 EPE . . . C 3 23.334 35.62 20.969 1 56.58 ? C9 EPE 302 A 1 HETATM 11 C C10 EPE . . . C 3 22.405 35.465 19.767 1 58.01 ? C10 EPE 302 A 1 HETATM 12 S S EPE . . . C 3 23.241 34.798 18.298 1 79.42 ? S EPE 302 A 1 HETATM 13 O O1S EPE . . . C 3 23.832 35.9 17.54 1 63.54 ? O1S EPE 302 A 1 HETATM 14 O O2S EPE . . . C 3 22.282 34.086 17.452 1 61.67 ? O2S EPE 302 A 1 HETATM 15 O O3S EPE . . . C 3 24.288 33.87 18.719 1 64.52 ? O3S EPE 302 A 1 HETATM 16 H H21 EPE . . . C 3 23.048 38.256 21.201 1 70.27 ? H21 EPE 302 A 1 HETATM 17 H H22 EPE . . . C 3 23.918 37.566 22.564 1 70.27 ? H22 EPE 302 A 1 HETATM 18 H H31 EPE . . . C 3 24.675 39.734 20.742 1 68.86 ? H31 EPE 302 A 1 HETATM 19 H H32 EPE . . . C 3 25.187 39.418 22.384 1 68.86 ? H32 EPE 302 A 1 HETATM 20 H H51 EPE . . . C 3 26.769 37.1 19.494 1 70.79 ? H51 EPE 302 A 1 HETATM 21 H H52 EPE . . . C 3 27.676 36.939 20.991 1 70.79 ? H52 EPE 302 A 1 HETATM 22 H H61 EPE . . . C 3 25.741 36.129 22.181 1 70.29 ? H61 EPE 302 A 1 HETATM 23 H H62 EPE . . . C 3 25.855 35.219 20.669 1 70.29 ? H62 EPE 302 A 1 HETATM 24 H H71 EPE . . . C 3 27.331 40.407 21.197 1 68.6 ? H71 EPE 302 A 1 HETATM 25 H H72 EPE . . . C 3 26.793 40.094 19.555 1 68.6 ? H72 EPE 302 A 1 HETATM 26 H H81 EPE . . . C 3 29.121 38.675 20.913 1 73.09 ? H81 EPE 302 A 1 HETATM 27 H H82 EPE . . . C 3 28.604 38.447 19.242 1 73.09 ? H82 EPE 302 A 1 HETATM 28 H HO8 EPE . . . C 3 28.926 41.09 19.714 1 73.51 ? HO8 EPE 302 A 1 HETATM 29 H H91 EPE . . . C 3 23.841 34.675 21.164 1 67.9 ? H91 EPE 302 A 1 HETATM 30 H H92 EPE . . . C 3 22.75 35.878 21.852 1 67.9 ? H92 EPE 302 A 1 HETATM 31 H H101 EPE . . . C 3 21.582 34.804 20.038 1 69.62 ? H101 EPE 302 A 1 HETATM 32 H H102 EPE . . . C 3 21.977 36.437 19.521 1 69.62 ? H102 EPE 302 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 32 #