data_5B5M # _model_server_result.job_id EAmOScFaEXlWfRuhlRE7LQ _model_server_result.datetime_utc '2024-11-27 20:55:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5b5m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"XD","auth_seq_id":101}' # _entry.id 5B5M # _exptl.entry_id 5B5M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 749.007 _entity.id 17 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.18 _cell.angle_gamma 90 _cell.entry_id 5B5M _cell.length_a 164.888 _cell.length_b 148.946 _cell.length_c 210.226 _cell.Z_PDB 64 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5B5M _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA 36-meric 36 author_and_software_defined_assembly 1 PISA 36-meric 36 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD,GD,HD,ID,JD,KD,LD,MD,ND,OD,PD,QD,RD,SD,TD,UD,VD,WD,XD,YD,ZD,AE,BE,CE,DE,EE,FE,GE,HE,IE,JE,KE,LE,ME,NE,OE,PE,QE,RE,SE,TE,UE,VE,WE,XE,YE,ZE,AF,BF,CF,DF,EF,FF,GF,HF,WI,XI,YI 1 1 KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,IF,JF,KF,LF,MF,NF,OF,PF,QF,RF,SF,TF,UF,VF,WF,XF,YF,ZF,AG,BG,CG,DG,EG,FG,GG,HG,IG,JG,KG,LG,MG,NG,OG,PG,QG,RG,SG,TG,UG,VG,WG,XG,YG,ZG,AH,BH,CH,DH,EH,FH,GH,HH,IH,JH,KH,LH,MH,NH,OH,PH,QH,RH,SH,TH,UH,VH,WH,XH,YH,ZH,AI,BI,CI,DI,EI,FI,GI,HI,II,JI,KI,LI,MI,NI,OI,PI,QI,RI,SI,TI,UI,VI,ZI,AJ,BJ 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 17 XD N N ? 17 LH N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O TYR 43 C TYR 43 1_555 YB SR SR . C SR 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc2 A SD MET 94 C MET 94 1_555 UB FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc3 A NE2 HIS 111 C HIS 111 1_555 UB FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc4 A SD MET 130 C MET 130 1_555 VB FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc5 A NE2 HIS 144 C HIS 144 1_555 XB FE HEM . C HEM 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc6 A NE2 HIS 156 C HIS 156 1_555 VB FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc7 A SD MET 236 C MET 236 1_555 WB FE HEM . C HEM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc8 A NE2 HIS 251 C HIS 251 1_555 WB FE HEM . C HEM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc9 A NE2 HIS 311 C HIS 311 1_555 XB FE HEM . C HEM 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc10 YB SR SR . C SR 505 1_555 B O THR 265 L THR 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? metalc ? metalc11 B O PRO 61 L PRO 61 1_555 FC SR SR . L SR 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc12 B OE1 GLN 66 L GLN 66 1_555 FC SR SR . L SR 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.985 ? metalc ? metalc13 B NE2 HIS 199 L HIS 199 1_555 HC FE FE . L FE 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc14 B NE2 HIS 239 L HIS 239 1_555 HC FE FE . L FE 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? metalc ? metalc15 FC SR SR . L SR 307 1_555 E O SER 41 A SER 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc16 GC SR SR . L SR 308 1_555 XI O HOH . L HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc17 GC SR SR . L SR 308 1_555 YI O HOH . W HOH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc18 HC FE FE . L FE 309 1_555 C NE2 HIS 219 M HIS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc19 HC FE FE . L FE 309 1_555 C OE1 GLU 234 M GLU 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc20 HC FE FE . L FE 309 1_555 C OE2 GLU 234 M GLU 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc21 HC FE FE . L FE 309 1_555 C NE2 HIS 266 M HIS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc22 E OD2 ASP 49 A ASP 49 1_555 XC SR SR . A SR 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc23 G O ASN 45 D ASN 45 1_555 BD SR SR . D SR 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc24 G OD2 ASP 49 D ASP 49 1_555 BD SR SR . D SR 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? metalc ? metalc25 I OD1 ASP 49 F ASP 49 1_555 ED SR SR . F SR 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc26 ED SR SR . F SR 102 1_555 K O TYR 55 I TYR 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc27 ED SR SR . F SR 102 1_555 K OE1 GLN 56 I GLN 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc28 K OD2 ASP 49 I ASP 49 1_555 ID SR SR . I SR 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc29 M OD1 ASP 49 K ASP 49 1_555 MD SR SR . K SR 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc30 MD SR SR . K SR 102 1_555 O OE1 GLN 56 O GLN 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? metalc ? metalc31 O O ASN 45 O ASN 45 1_555 QD SR SR . O SR 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc32 O OD2 ASP 49 O ASP 49 1_555 QD SR SR . O SR 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc33 QD SR SR . O SR 102 1_555 Q OE1 GLN 56 Q GLN 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? metalc ? metalc34 Q OD2 ASP 49 Q ASP 49 1_555 UD SR SR . Q SR 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc35 S O ASN 45 S ASN 45 1_555 ZD SR SR . S SR 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc36 S OD1 ASP 49 S ASP 49 1_555 ZD SR SR . S SR 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc37 ZD SR SR . S SR 103 1_555 U OE1 GLN 56 U GLN 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc38 U O ASN 45 U ASN 45 1_555 EE SR SR . U SR 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.997 ? metalc ? metalc39 W OD1 ASP 49 W ASP 49 1_555 HE SR SR . W SR 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.957 ? metalc ? metalc40 W OD2 ASP 49 W ASP 49 1_555 HE SR SR . W SR 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc41 HE SR SR . W SR 102 1_555 Y O TYR 55 Y TYR 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.881 ? metalc ? metalc42 Y OD1 ASP 49 Y ASP 49 1_555 LE SR SR . Y SR 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.908 ? metalc ? metalc43 LE SR SR . Y SR 102 1_555 AA O TYR 55 1 TYR 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc44 AA O ASN 45 1 ASN 45 1_555 QE SR SR . 1 SR 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc45 AA OD1 ASP 49 1 ASP 49 1_555 QE SR SR . 1 SR 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? metalc ? metalc46 QE SR SR . 1 SR 103 1_555 CA O TYR 55 3 TYR 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc47 EA O ASP 43 5 ASP 43 1_555 YE SR SR . 5 SR 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? metalc ? metalc48 EA O ASN 45 5 ASN 45 1_555 YE SR SR . 5 SR 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? metalc ? metalc49 YE SR SR . 5 SR 104 1_555 GA OE1 GLN 56 7 GLN 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.98 ? metalc ? metalc50 GA OD2 ASP 49 7 ASP 49 1_555 BF SR SR . 7 SR 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc51 IA OD2 ASP 49 9 ASP 49 1_555 EF SR SR . 9 SR 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.93 ? metalc ? metalc52 KA O TYR 43 o TYR 43 1_555 MF SR SR . o SR 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? metalc ? metalc53 KA SD MET 94 o MET 94 1_555 IF FE HEM . o HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc54 KA NE2 HIS 111 o HIS 111 1_555 IF FE HEM . o HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc55 KA SD MET 130 o MET 130 1_555 JF FE HEM . o HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc56 KA NE2 HIS 144 o HIS 144 1_555 LF FE HEM . o HEM 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc57 KA NE2 HIS 156 o HIS 156 1_555 JF FE HEM . o HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc58 KA SD MET 236 o MET 236 1_555 KF FE HEM . o HEM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc59 KA NE2 HIS 251 o HIS 251 1_555 KF FE HEM . o HEM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc60 KA NE2 HIS 311 o HIS 311 1_555 LF FE HEM . o HEM 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc61 MF SR SR . o SR 505 1_555 LA O THR 265 x THR 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.979 ? metalc ? metalc62 LA O PRO 61 x PRO 61 1_555 UF SR SR . x SR 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc63 LA OE1 GLN 66 x GLN 66 1_555 UF SR SR . x SR 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? metalc ? metalc64 LA NE2 HIS 199 x HIS 199 1_555 VF FE FE . x FE 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc65 LA NE2 HIS 239 x HIS 239 1_555 VF FE FE . x FE 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc66 LA OXT TRP 281 x TRP 281 1_555 TF SR SR . x SR 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.87 ? metalc ? metalc67 TF SR SR . x SR 307 1_555 BJ O HOH . AI HOH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? metalc ? metalc68 UF SR SR . x SR 308 1_555 OA O SER 41 m SER 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc69 UF SR SR . x SR 308 1_555 QA OD2 ASP 48 p ASP 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.99 ? metalc ? metalc70 VF FE FE . x FE 309 1_555 MA NE2 HIS 219 y HIS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? metalc ? metalc71 VF FE FE . x FE 309 1_555 MA OE1 GLU 234 y GLU 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc72 VF FE FE . x FE 309 1_555 MA OE2 GLU 234 y GLU 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc73 VF FE FE . x FE 309 1_555 MA NE2 HIS 266 y HIS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc74 OA O ASN 45 m ASN 45 1_555 KG SR SR . m SR 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.928 ? metalc ? metalc75 OA OD2 ASP 49 m ASP 49 1_555 KG SR SR . m SR 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc76 KG SR SR . m SR 104 1_555 QA O TYR 55 p TYR 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc77 QA O ASP 43 p ASP 43 1_555 QG SR SR . p SR 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc78 QA OD2 ASP 49 p ASP 49 1_555 QG SR SR . p SR 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? metalc ? metalc79 SA O ASN 45 r ASN 45 1_555 SG SR SR . r SR 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.907 ? metalc ? metalc80 WA OD2 ASP 49 w ASP 49 1_555 ZG SR SR . w SR 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc81 WA OE1 GLN 56 w GLN 56 1_555 AH SR SR . w SR 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? metalc ? metalc82 WA NE2 GLN 56 w GLN 56 1_555 AH SR SR . w SR 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? metalc ? metalc83 YA OD2 ASP 49 AA ASP 49 1_555 EH SR SR . AA SR 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? metalc ? metalc84 EH SR SR . AA SR 102 1_555 AB O TYR 55 AC TYR 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc85 EH SR SR . AA SR 102 1_555 AB OE1 GLN 56 AC GLN 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc86 AB O ASP 43 AC ASP 43 1_555 IH SR SR . AC SR 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc87 AB O ASN 45 AC ASN 45 1_555 IH SR SR . AC SR 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc88 AB OD2 ASP 49 AC ASP 49 1_555 IH SR SR . AC SR 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc89 CB OD2 ASP 49 AE ASP 49 1_555 PH SR SR . AE SR 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? metalc ? metalc90 GB OD1 ASP 49 AI ASP 49 1_555 VH SR SR . AI SR 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? metalc ? metalc91 GB OD2 ASP 49 AI ASP 49 1_555 VH SR SR . AI SR 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc92 GB O TYR 55 AI TYR 55 1_555 UH SR SR . AI SR 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.988 ? metalc ? metalc93 GB OE1 GLN 56 AI GLN 56 1_555 UH SR SR . AI SR 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? metalc ? metalc94 GB NE2 GLN 56 AI GLN 56 1_555 UH SR SR . AI SR 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.957 ? metalc ? metalc95 VH SR SR . AI SR 103 1_555 IB N GLN 56 AK GLN 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? metalc ? metalc96 IB O ASP 43 AK ASP 43 1_555 ZH SR SR . AK SR 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? metalc ? metalc97 ZH SR SR . AK SR 102 1_555 KB OE1 GLN 56 d GLN 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? metalc ? metalc98 KB O ASP 43 d ASP 43 1_555 DI SR SR . d SR 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc99 KB OD2 ASP 49 d ASP 49 1_555 DI SR SR . d SR 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.95 ? metalc ? metalc100 MB OD2 ASP 49 f ASP 49 1_555 II SR SR . f SR 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc101 OB OD1 ASP 49 h ASP 49 1_555 LI SR SR . h SR 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.912 ? metalc ? metalc102 OB OD2 ASP 49 h ASP 49 1_555 LI SR SR . h SR 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc103 LI SR SR . h SR 102 1_555 QB O TYR 55 j TYR 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc104 QB O ASN 45 j ASN 45 1_555 PI SR SR . j SR 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? metalc ? metalc105 QB OD2 ASP 49 j ASP 49 1_555 PI SR SR . j SR 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc106 PI SR SR . j SR 102 1_555 SB O TYR 55 l TYR 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc107 SB OD2 ASP 49 l ASP 49 1_555 TI SR SR . l SR 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? # _chem_comp.formula 'C40 H77 O10 P' _chem_comp.formula_weight 749.007 _chem_comp.id PGW _chem_comp.mon_nstd_flag . _chem_comp.name '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Palmitoyl-2-Oleoyl-sn-Glycero-3-[Phospho-(1-glycerol)];PHOSPHATIDYLGLYCEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAD C05 PGW sing 962 n n CAD HAD PGW sing 963 n n CAD HADA PGW sing 964 n n OAE CAD PGW sing 965 n n OAE HOAE PGW sing 966 n n OAF C05 PGW sing 967 n n OAF HOAF PGW sing 968 n n P O13 PGW sing 969 n n P O11 PGW sing 970 n n C01 O03 PGW sing 971 n n C01 C02 PGW sing 972 n n C01 H01 PGW sing 973 n n C01 H01A PGW sing 974 n n C1 C2 PGW sing 975 n n O01 C1 PGW sing 976 n n C02 O01 PGW sing 977 n n C02 H02 PGW sing 978 n n C2 C3 PGW sing 979 n n C2 H2 PGW sing 980 n n C2 H2A PGW sing 981 n n O02 C1 PGW doub 982 n n C03 C02 PGW sing 983 n n C03 H03 PGW sing 984 n n C03 H03A PGW sing 985 n n C3 C4 PGW sing 986 n n C3 H3 PGW sing 987 n n C3 H3A PGW sing 988 n n C04 C05 PGW sing 989 n n C04 O12 PGW sing 990 n n C04 H04 PGW sing 991 n n C04 H04A PGW sing 992 n n C4 C5 PGW sing 993 n n C4 H4 PGW sing 994 n n C4 H4A PGW sing 995 n n O04 C19 PGW doub 996 n n C05 H05 PGW sing 997 n n C5 C6 PGW sing 998 n n C5 H5 PGW sing 999 n n C5 H5A PGW sing 1000 n n C06 C07 PGW sing 1001 n n C06 H06 PGW sing 1002 n n C06 H06A PGW sing 1003 n n C6 C7 PGW sing 1004 n n C6 H6 PGW sing 1005 n n C6 H6A PGW sing 1006 n n C07 H07 PGW sing 1007 n n C07 H07A PGW sing 1008 n n C7 C8 PGW sing 1009 n n C7 H7 PGW sing 1010 n n C7 H7A PGW sing 1011 n n C08 C07 PGW sing 1012 n n C08 H08 PGW sing 1013 n n C08 H08A PGW sing 1014 n n C8 C9 PGW sing 1015 n n C8 H8 PGW sing 1016 n n C8 H8A PGW sing 1017 n n C09 C08 PGW sing 1018 n n C09 C11 PGW sing 1019 n n C09 H09 PGW sing 1020 n n C09 H09A PGW sing 1021 n n C9 C10 PGW doub 1022 z n C10 C06 PGW sing 1023 n n C11 H11 PGW sing 1024 n n C11 H11A PGW sing 1025 n n O11 C03 PGW sing 1026 n n C12 C11 PGW sing 1027 n n C12 H12 PGW sing 1028 n n C12 H12A PGW sing 1029 n n O12 P PGW sing 1030 n n C13 C12 PGW sing 1031 n n C13 C14 PGW sing 1032 n n C13 H13 PGW sing 1033 n n C13 H13A PGW sing 1034 n n O13 HO13 PGW sing 1035 n n C14 H14 PGW sing 1036 n n C14 H14A PGW sing 1037 n n C14 H14B PGW sing 1038 n n O14 P PGW doub 1039 n n C15 C16 PGW sing 1040 n n C15 H15 PGW sing 1041 n n C15 H15A PGW sing 1042 n n C16 H16 PGW sing 1043 n n C16 H16A PGW sing 1044 n n C17 C16 PGW sing 1045 n n C17 C18 PGW sing 1046 n n C17 H17 PGW sing 1047 n n C17 H17A PGW sing 1048 n n C18 C28 PGW sing 1049 n n C18 H18 PGW sing 1050 n n C18 H18A PGW sing 1051 n n C19 O03 PGW sing 1052 n n C19 C20 PGW sing 1053 n n C20 C21 PGW sing 1054 n n C20 H20 PGW sing 1055 n n C20 H20A PGW sing 1056 n n C21 C22 PGW sing 1057 n n C21 H21 PGW sing 1058 n n C21 H21A PGW sing 1059 n n C22 C23 PGW sing 1060 n n C22 H22 PGW sing 1061 n n C22 H22A PGW sing 1062 n n C23 C24 PGW sing 1063 n n C23 H23 PGW sing 1064 n n C23 H23A PGW sing 1065 n n C24 C25 PGW sing 1066 n n C24 H24 PGW sing 1067 n n C24 H24A PGW sing 1068 n n C25 C26 PGW sing 1069 n n C25 H25 PGW sing 1070 n n C25 H25A PGW sing 1071 n n C26 C27 PGW sing 1072 n n C26 H26 PGW sing 1073 n n C26 H26A PGW sing 1074 n n C27 C15 PGW sing 1075 n n C27 H27 PGW sing 1076 n n C27 H27A PGW sing 1077 n n C28 H28 PGW sing 1078 n n C28 H28A PGW sing 1079 n n C29 H29 PGW sing 1080 n n C29 H29A PGW sing 1081 n n C29 H29B PGW sing 1082 n n C30 C28 PGW sing 1083 n n C30 C29 PGW sing 1084 n n C30 H30 PGW sing 1085 n n C30 H30A PGW sing 1086 n n C9 H9 PGW sing 1087 n n C10 H10 PGW sing 1088 n n # _atom_sites.entry_id 5B5M _atom_sites.fract_transf_matrix[1][1] 0.006065 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001992 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006714 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005007 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code UB 7 HEM C 1 501 501 HEM HEM . VB 7 HEM C 1 502 502 HEM HEM . WB 7 HEM C 1 503 503 HEM HEM . XB 7 HEM C 1 504 504 HEM HEM . YB 8 SR C 1 505 505 SR SR . ZB 9 BCL L 1 301 301 BCL BCL . AC 10 BPH L 1 302 302 BPH BPH . BC 9 BCL L 1 303 303 BCL BCL . CC 11 UQ8 L 1 304 304 UQ8 UQ8 . DC 9 BCL L 1 305 401 BCL BCL . EC 12 PEF L 1 306 309 PEF PEF . FC 8 SR L 1 307 305 SR SR . GC 8 SR L 1 308 306 SR SR . HC 13 FE L 1 309 404 FE FE . IC 9 BCL M 1 401 402 BCL BCL . JC 10 BPH M 1 402 403 BPH BPH . KC 14 MQ8 M 1 403 405 MQ8 MQ8 . LC 15 CRT M 1 404 406 CRT CRT . MC 16 PO4 M 1 405 408 PO4 PO4 . NC 12 PEF M 1 406 301 PEF PEF . OC 12 PEF M 1 407 307 PEF PEF . PC 12 PEF M 1 408 308 PEF PEF . QC 12 PEF H 1 301 303 PEF PEF . RC 16 PO4 H 1 302 304 PO4 PO4 . SC 12 PEF H 1 303 305 PEF PEF . TC 12 PEF H 1 304 306 PEF PEF . UC 12 PEF A 1 101 302 PEF PEF . VC 9 BCL A 1 102 101 BCL BCL . WC 15 CRT A 1 103 102 CRT CRT . XC 8 SR A 1 104 103 SR SR . YC 9 BCL B 1 101 101 BCL BCL . ZC 9 BCL D 1 101 101 BCL BCL . AD 9 BCL D 1 102 101 BCL BCL . BD 8 SR D 1 103 103 SR SR . CD 15 CRT E 1 101 102 CRT CRT . DD 9 BCL F 1 101 101 BCL BCL . ED 8 SR F 1 102 103 SR SR . FD 15 CRT G 1 101 102 CRT CRT . GD 9 BCL G 1 102 101 BCL BCL . HD 9 BCL I 1 101 101 BCL BCL . ID 8 SR I 1 102 103 SR SR . JD 15 CRT J 1 101 102 CRT CRT . KD 9 BCL J 1 102 101 BCL BCL . LD 9 BCL K 1 101 101 BCL BCL . MD 8 SR K 1 102 103 SR SR . ND 15 CRT N 1 101 102 CRT CRT . OD 9 BCL N 1 102 101 BCL BCL . PD 9 BCL O 1 101 101 BCL BCL . QD 8 SR O 1 102 103 SR SR . RD 9 BCL P 1 101 101 BCL BCL . SD 15 CRT P 1 102 102 CRT CRT . TD 9 BCL Q 1 101 101 BCL BCL . UD 8 SR Q 1 102 103 SR SR . VD 15 CRT R 1 101 102 CRT CRT . WD 9 BCL R 1 102 101 BCL BCL . XD 17 PGW S 1 101 407 PGW PGW . YD 9 BCL S 1 102 101 BCL BCL . ZD 8 SR S 1 103 103 SR SR . AE 15 CRT T 1 101 102 CRT CRT . BE 9 BCL T 1 102 101 BCL BCL . CE 9 BCL U 1 101 101 BCL BCL . DE 15 CRT U 1 102 102 CRT CRT . EE 8 SR U 1 103 103 SR SR . FE 9 BCL V 1 101 101 BCL BCL . GE 9 BCL W 1 101 101 BCL BCL . HE 8 SR W 1 102 103 SR SR . IE 15 CRT X 1 101 102 CRT CRT . JE 9 BCL X 1 102 101 BCL BCL . KE 9 BCL Y 1 101 101 BCL BCL . LE 8 SR Y 1 102 103 SR SR . ME 15 CRT Z 1 101 102 CRT CRT . NE 9 BCL Z 1 102 101 BCL BCL . OE 9 BCL 1 1 101 101 BCL BCL . PE 9 BCL 1 1 102 101 BCL BCL . QE 8 SR 1 1 103 103 SR SR . RE 15 CRT 2 1 101 102 CRT CRT . SE 9 BCL 3 1 101 101 BCL BCL . TE 15 CRT 4 1 101 102 CRT CRT . UE 9 BCL 4 1 102 101 BCL BCL . VE 9 BCL 5 1 101 101 BCL BCL . WE 9 BCL 5 1 102 101 BCL BCL . XE 8 SR 5 1 103 103 SR SR . YE 8 SR 5 1 104 103 SR SR . ZE 15 CRT 6 1 101 102 CRT CRT . AF 9 BCL 7 1 101 101 BCL BCL . BF 8 SR 7 1 102 103 SR SR . CF 15 CRT 8 1 101 102 CRT CRT . DF 9 BCL 8 1 102 101 BCL BCL . EF 8 SR 9 1 101 103 SR SR . FF 15 CRT 9 1 102 102 CRT CRT . GF 9 BCL 9 1 103 101 BCL BCL . HF 9 BCL 0 1 101 101 BCL BCL . IF 7 HEM o 1 501 501 HEM HEM . JF 7 HEM o 1 502 502 HEM HEM . KF 7 HEM o 1 503 503 HEM HEM . LF 7 HEM o 1 504 504 HEM HEM . MF 8 SR o 1 505 505 SR SR . NF 9 BCL x 1 301 301 BCL BCL . OF 10 BPH x 1 302 302 BPH BPH . PF 9 BCL x 1 303 303 BCL BCL . QF 11 UQ8 x 1 304 304 UQ8 UQ8 . RF 9 BCL x 1 305 401 BCL BCL . SF 12 PEF x 1 306 305 PEF PEF . TF 8 SR x 1 307 305 SR SR . UF 8 SR x 1 308 306 SR SR . VF 13 FE x 1 309 404 FE FE . WF 9 BCL y 1 401 402 BCL BCL . XF 10 BPH y 1 402 403 BPH BPH . YF 14 MQ8 y 1 403 405 MQ8 MQ8 . ZF 15 CRT y 1 404 406 CRT CRT . AG 16 PO4 y 1 405 408 PO4 PO4 . BG 12 PEF y 1 406 307 PEF PEF . CG 12 PEF y 1 407 308 PEF PEF . DG 12 PEF y 1 408 309 PEF PEF . EG 12 PEF t 1 301 301 PEF PEF . FG 16 PO4 t 1 302 304 PO4 PO4 . GG 12 PEF t 1 303 306 PEF PEF . HG 12 PEF m 1 101 302 PEF PEF . IG 9 BCL m 1 102 101 BCL BCL . JG 9 BCL m 1 103 101 BCL BCL . KG 8 SR m 1 104 103 SR SR . LG 15 CRT n 1 101 102 CRT CRT . MG 12 PEF p 1 101 303 PEF PEF . NG 9 BCL p 1 102 101 BCL BCL . OG 15 CRT p 1 103 102 CRT CRT . PG 9 BCL p 1 104 101 BCL BCL . QG 8 SR p 1 105 103 SR SR . RG 9 BCL r 1 101 101 BCL BCL . SG 8 SR r 1 102 103 SR SR . TG 15 CRT s 1 101 102 CRT CRT . UG 9 BCL s 1 102 101 BCL BCL . VG 9 BCL u 1 101 101 BCL BCL . WG 15 CRT v 1 101 102 CRT CRT . XG 9 BCL v 1 102 101 BCL BCL . YG 9 BCL w 1 101 101 BCL BCL . ZG 8 SR w 1 102 103 SR SR . AH 8 SR w 1 103 103 SR SR . BH 15 CRT z 1 101 102 CRT CRT . CH 9 BCL z 1 102 101 BCL BCL . DH 9 BCL AA 1 101 101 BCL BCL . EH 8 SR AA 1 102 103 SR SR . FH 9 BCL AB 1 101 101 BCL BCL . GH 15 CRT AC 1 101 102 CRT CRT . HH 9 BCL AC 1 102 101 BCL BCL . IH 8 SR AC 1 103 103 SR SR . JH 9 BCL AD 1 101 101 BCL BCL . KH 15 CRT AD 1 102 102 CRT CRT . LH 17 PGW AE 1 101 407 PGW PGW . MH 9 BCL AE 1 102 101 BCL BCL . NH 15 CRT AE 1 103 102 CRT CRT . OH 9 BCL AE 1 104 101 BCL BCL . PH 8 SR AE 1 105 103 SR SR . QH 9 BCL AH 1 101 101 BCL BCL . RH 15 CRT AH 1 102 102 CRT CRT . SH 9 BCL AH 1 103 101 BCL BCL . TH 9 BCL AI 1 101 101 BCL BCL . UH 8 SR AI 1 102 103 SR SR . VH 8 SR AI 1 103 103 SR SR . WH 15 CRT AJ 1 101 102 CRT CRT . XH 9 BCL AJ 1 102 101 BCL BCL . YH 9 BCL AK 1 101 101 BCL BCL . ZH 8 SR AK 1 102 103 SR SR . AI 15 CRT AL 1 101 102 CRT CRT . BI 9 BCL AL 1 102 101 BCL BCL . CI 9 BCL d 1 101 101 BCL BCL . DI 8 SR d 1 102 103 SR SR . EI 15 CRT e 1 101 102 CRT CRT . FI 9 BCL e 1 102 101 BCL BCL . GI 9 BCL f 1 101 101 BCL BCL . HI 15 CRT f 1 102 102 CRT CRT . II 8 SR f 1 103 103 SR SR . JI 9 BCL g 1 101 101 BCL BCL . KI 9 BCL h 1 101 101 BCL BCL . LI 8 SR h 1 102 103 SR SR . MI 15 CRT i 1 101 102 CRT CRT . NI 9 BCL i 1 102 101 BCL BCL . OI 9 BCL j 1 101 101 BCL BCL . PI 8 SR j 1 102 103 SR SR . QI 15 CRT k 1 101 102 CRT CRT . RI 9 BCL k 1 102 101 BCL BCL . SI 9 BCL l 1 101 101 BCL BCL . TI 8 SR l 1 102 103 SR SR . UI 15 CRT c 1 101 102 CRT CRT . VI 9 BCL c 1 102 101 BCL BCL . WI 18 HOH C 1 601 506 HOH HOH . XI 18 HOH L 1 401 307 HOH HOH . YI 18 HOH W 1 201 308 HOH HOH . ZI 18 HOH o 1 601 506 HOH HOH . AJ 18 HOH x 1 401 307 HOH HOH . BJ 18 HOH AI 1 201 308 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAD PGW . . . XD 17 -98.969 17.028 422.108 1 140.04 ? CAD PGW 101 S 1 HETATM 2 O OAE PGW . . . XD 17 -98.404 16.51 423.287 1 137.85 ? OAE PGW 101 S 1 HETATM 3 O OAF PGW . . . XD 17 -98.482 19.225 421.409 1 148.88 ? OAF PGW 101 S 1 HETATM 4 P P PGW . . . XD 17 -97.367 15.097 418.729 1 133.89 ? P PGW 101 S 1 HETATM 5 C C01 PGW . . . XD 17 -101.924 14.259 418.751 1 131.88 ? C01 PGW 101 S 1 HETATM 6 C C1 PGW . . . XD 17 -100.536 10.815 418.371 1 120.35 ? C1 PGW 101 S 1 HETATM 7 O O01 PGW . . . XD 17 -101.363 11.95 418.49 1 124.11 ? O01 PGW 101 S 1 HETATM 8 C C02 PGW . . . XD 17 -100.787 13.223 418.789 1 127.9 ? C02 PGW 101 S 1 HETATM 9 C C2 PGW . . . XD 17 -100.265 10.301 416.967 1 119.36 ? C2 PGW 101 S 1 HETATM 10 O O02 PGW . . . XD 17 -100.073 10.252 419.357 1 118.14 ? O02 PGW 101 S 1 HETATM 11 C C03 PGW . . . XD 17 -99.559 13.635 417.945 1 129.3 ? C03 PGW 101 S 1 HETATM 12 O O03 PGW . . . XD 17 -102.236 14.796 417.475 1 134.55 ? O03 PGW 101 S 1 HETATM 13 C C04 PGW . . . XD 17 -97.504 17.393 420.141 1 142 ? C04 PGW 101 S 1 HETATM 14 O O04 PGW . . . XD 17 -103.615 13.025 417.089 1 129.57 ? O04 PGW 101 S 1 HETATM 15 C C05 PGW . . . XD 17 -97.934 17.932 421.498 1 143.72 ? C05 PGW 101 S 1 HETATM 16 O O11 PGW . . . XD 17 -98.326 13.774 418.683 1 129.31 ? O11 PGW 101 S 1 HETATM 17 O O12 PGW . . . XD 17 -97.738 15.992 420.031 1 136.74 ? O12 PGW 101 S 1 HETATM 18 O O13 PGW . . . XD 17 -95.924 14.595 418.821 1 132.27 ? O13 PGW 101 S 1 HETATM 19 O O14 PGW . . . XD 17 -97.449 15.964 417.466 1 137.43 ? O14 PGW 101 S 1 HETATM 20 C C19 PGW . . . XD 17 -102.964 13.943 416.624 1 132.49 ? C19 PGW 101 S 1 HETATM 21 C C20 PGW . . . XD 17 -102.918 14.164 415.122 1 134.13 ? C20 PGW 101 S 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 52 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 21 #