data_5B5U # _model_server_result.job_id mDedCCzMCvSNcbHrARwx6g _model_server_result.datetime_utc '2024-11-04 05:43:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5b5u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 5B5U # _exptl.entry_id 5B5U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 133.103 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ASPARTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5B5U _cell.length_a 91.31 _cell.length_b 91.31 _cell.length_c 186.971 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5B5U _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_555 -y,-x,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 31.161833 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 39 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 39 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 42 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 42 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.033 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C4 H7 N O4' _chem_comp.formula_weight 133.103 _chem_comp.id ASP _chem_comp.mon_nstd_flag y _chem_comp.name 'ASPARTIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ASP sing 55 n n N H ASP sing 56 n n N H2 ASP sing 57 n n CA C ASP sing 58 n n CA CB ASP sing 59 n n CA HA ASP sing 60 n n C O ASP doub 61 n n C OXT ASP sing 62 n n CB CG ASP sing 63 n n CB HB2 ASP sing 64 n n CB HB3 ASP sing 65 n n CG OD1 ASP doub 66 n n CG OD2 ASP sing 67 n n OD2 HD2 ASP sing 68 n n OXT HXT ASP sing 69 n n # _atom_sites.entry_id 5B5U _atom_sites.fract_transf_matrix[1][1] 0.010952 _atom_sites.fract_transf_matrix[1][2] 0.006323 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012646 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005348 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 ASP A 1 201 1 ASP ASP . F 5 CL A 1 202 1 CL CL . G 6 IPA A 1 203 1 IPA IPA . H 6 IPA A 1 204 2 IPA IPA . I 7 GOL A 1 205 1 GOL GOL . J 7 GOL A 1 206 2 GOL GOL . K 7 GOL A 1 207 3 GOL GOL . L 5 CL B 1 401 2 CL CL . M 8 HOH A 1 301 9 HOH HOH . M 8 HOH A 2 302 2 HOH HOH . M 8 HOH A 3 303 5 HOH HOH . M 8 HOH A 4 304 8 HOH HOH . M 8 HOH A 5 305 7 HOH HOH . M 8 HOH A 6 306 19 HOH HOH . M 8 HOH A 7 307 6 HOH HOH . M 8 HOH A 8 308 3 HOH HOH . M 8 HOH A 9 309 23 HOH HOH . M 8 HOH A 10 310 14 HOH HOH . M 8 HOH A 11 311 12 HOH HOH . M 8 HOH A 12 312 17 HOH HOH . M 8 HOH A 13 313 26 HOH HOH . M 8 HOH A 14 314 18 HOH HOH . M 8 HOH A 15 315 22 HOH HOH . N 8 HOH B 1 501 15 HOH HOH . N 8 HOH B 2 502 11 HOH HOH . N 8 HOH B 3 503 16 HOH HOH . N 8 HOH B 4 504 20 HOH HOH . N 8 HOH B 5 505 13 HOH HOH . N 8 HOH B 6 506 10 HOH HOH . N 8 HOH B 7 507 1 HOH HOH . N 8 HOH B 8 508 21 HOH HOH . N 8 HOH B 9 509 24 HOH HOH . N 8 HOH B 10 510 27 HOH HOH . N 8 HOH B 11 511 25 HOH HOH . O 8 HOH E 1 101 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ASP . . . E 4 36.807 -29.342 -1.265 1 40.98 ? N ASP 201 A 1 HETATM 2 C CA ASP . . . E 4 36.415 -28.102 -1.917 1 37.84 ? CA ASP 201 A 1 HETATM 3 C C ASP . . . E 4 37.66 -27.28 -2.223 1 38.03 ? C ASP 201 A 1 HETATM 4 O O ASP . . . E 4 38.292 -27.367 -3.291 1 30.03 ? O ASP 201 A 1 HETATM 5 C CB ASP . . . E 4 35.509 -27.308 -0.982 1 38.07 ? CB ASP 201 A 1 HETATM 6 C CG ASP . . . E 4 34.7 -26.244 -1.705 1 38.7 ? CG ASP 201 A 1 HETATM 7 O OD1 ASP . . . E 4 35.141 -25.773 -2.773 1 34.05 ? OD1 ASP 201 A 1 HETATM 8 O OD2 ASP . . . E 4 33.609 -25.886 -1.197 1 42.96 ? OD2 ASP 201 A 1 HETATM 9 O OXT ASP . . . E 4 38.052 -26.493 -1.354 1 37.2 ? OXT ASP 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #