data_5B5Y # _model_server_result.job_id E7IdsfLp6uVwpVpcRW-1IQ _model_server_result.datetime_utc '2024-10-28 02:23:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5b5y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 5B5Y # _exptl.entry_id 5B5Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 87.96 _cell.angle_beta 102.79 _cell.angle_gamma 93.31 _cell.entry_id 5B5Y _cell.length_a 47.91 _cell.length_b 48.04 _cell.length_c 59.98 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5B5Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 61 A CYS 46 1_555 C ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc2 A NE2 HIS 117 A HIS 102 1_555 C ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc3 A SG CYS 141 A CYS 126 1_555 C ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc4 C ZN ZN . A ZN 500 1_555 G O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc5 B SG CYS 61 B CYS 46 1_555 E ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc6 B NE2 HIS 117 B HIS 102 1_555 E ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc7 B SG CYS 141 B CYS 126 1_555 E ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc8 E ZN ZN . B ZN 500 1_555 H O HOH . B HOH 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5B5Y _atom_sites.fract_transf_matrix[1][1] 0.020872 _atom_sites.fract_transf_matrix[1][2] 0.001207 _atom_sites.fract_transf_matrix[1][3] 0.004711 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020851 _atom_sites.fract_transf_matrix[2][3] -0.000489 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017101 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 500 500 ZN ZN . D 3 ACT A 1 501 501 ACT ACT . E 2 ZN B 1 500 500 ZN ZN . F 3 ACT B 1 501 501 ACT ACT . G 4 HOH A 1 601 49 HOH HOH . G 4 HOH A 2 602 35 HOH HOH . G 4 HOH A 3 603 373 HOH HOH . G 4 HOH A 4 604 402 HOH HOH . G 4 HOH A 5 605 1 HOH HOH . G 4 HOH A 6 606 282 HOH HOH . G 4 HOH A 7 607 204 HOH HOH . G 4 HOH A 8 608 241 HOH HOH . G 4 HOH A 9 609 310 HOH HOH . G 4 HOH A 10 610 208 HOH HOH . G 4 HOH A 11 611 317 HOH HOH . G 4 HOH A 12 612 94 HOH HOH . G 4 HOH A 13 613 169 HOH HOH . G 4 HOH A 14 614 60 HOH HOH . G 4 HOH A 15 615 40 HOH HOH . G 4 HOH A 16 616 198 HOH HOH . G 4 HOH A 17 617 137 HOH HOH . G 4 HOH A 18 618 30 HOH HOH . G 4 HOH A 19 619 38 HOH HOH . G 4 HOH A 20 620 171 HOH HOH . G 4 HOH A 21 621 111 HOH HOH . G 4 HOH A 22 622 277 HOH HOH . G 4 HOH A 23 623 112 HOH HOH . G 4 HOH A 24 624 45 HOH HOH . G 4 HOH A 25 625 63 HOH HOH . G 4 HOH A 26 626 18 HOH HOH . G 4 HOH A 27 627 159 HOH HOH . G 4 HOH A 28 628 311 HOH HOH . G 4 HOH A 29 629 80 HOH HOH . G 4 HOH A 30 630 229 HOH HOH . G 4 HOH A 31 631 52 HOH HOH . G 4 HOH A 32 632 19 HOH HOH . G 4 HOH A 33 633 72 HOH HOH . G 4 HOH A 34 634 36 HOH HOH . G 4 HOH A 35 635 115 HOH HOH . G 4 HOH A 36 636 13 HOH HOH . G 4 HOH A 37 637 143 HOH HOH . G 4 HOH A 38 638 59 HOH HOH . G 4 HOH A 39 639 195 HOH HOH . G 4 HOH A 40 640 165 HOH HOH . G 4 HOH A 41 641 182 HOH HOH . G 4 HOH A 42 642 2 HOH HOH . G 4 HOH A 43 643 223 HOH HOH . G 4 HOH A 44 644 341 HOH HOH . G 4 HOH A 45 645 75 HOH HOH . G 4 HOH A 46 646 283 HOH HOH . G 4 HOH A 47 647 226 HOH HOH . G 4 HOH A 48 648 55 HOH HOH . G 4 HOH A 49 649 90 HOH HOH . G 4 HOH A 50 650 68 HOH HOH . G 4 HOH A 51 651 5 HOH HOH . G 4 HOH A 52 652 391 HOH HOH . G 4 HOH A 53 653 98 HOH HOH . G 4 HOH A 54 654 46 HOH HOH . G 4 HOH A 55 655 163 HOH HOH . G 4 HOH A 56 656 53 HOH HOH . G 4 HOH A 57 657 58 HOH HOH . G 4 HOH A 58 658 76 HOH HOH . G 4 HOH A 59 659 125 HOH HOH . G 4 HOH A 60 660 113 HOH HOH . G 4 HOH A 61 661 44 HOH HOH . G 4 HOH A 62 662 95 HOH HOH . G 4 HOH A 63 663 153 HOH HOH . G 4 HOH A 64 664 15 HOH HOH . G 4 HOH A 65 665 96 HOH HOH . G 4 HOH A 66 666 325 HOH HOH . G 4 HOH A 67 667 151 HOH HOH . G 4 HOH A 68 668 22 HOH HOH . G 4 HOH A 69 669 213 HOH HOH . G 4 HOH A 70 670 150 HOH HOH . G 4 HOH A 71 671 353 HOH HOH . G 4 HOH A 72 672 235 HOH HOH . G 4 HOH A 73 673 162 HOH HOH . G 4 HOH A 74 674 148 HOH HOH . G 4 HOH A 75 675 192 HOH HOH . G 4 HOH A 76 676 315 HOH HOH . G 4 HOH A 77 677 156 HOH HOH . G 4 HOH A 78 678 8 HOH HOH . G 4 HOH A 79 679 10 HOH HOH . G 4 HOH A 80 680 154 HOH HOH . G 4 HOH A 81 681 138 HOH HOH . G 4 HOH A 82 682 203 HOH HOH . G 4 HOH A 83 683 324 HOH HOH . G 4 HOH A 84 684 144 HOH HOH . G 4 HOH A 85 685 110 HOH HOH . G 4 HOH A 86 686 368 HOH HOH . G 4 HOH A 87 687 183 HOH HOH . G 4 HOH A 88 688 376 HOH HOH . G 4 HOH A 89 689 124 HOH HOH . G 4 HOH A 90 690 139 HOH HOH . G 4 HOH A 91 691 56 HOH HOH . G 4 HOH A 92 692 27 HOH HOH . G 4 HOH A 93 693 339 HOH HOH . G 4 HOH A 94 694 39 HOH HOH . G 4 HOH A 95 695 51 HOH HOH . G 4 HOH A 96 696 71 HOH HOH . G 4 HOH A 97 697 236 HOH HOH . G 4 HOH A 98 698 216 HOH HOH . G 4 HOH A 99 699 244 HOH HOH . G 4 HOH A 100 700 168 HOH HOH . G 4 HOH A 101 701 246 HOH HOH . G 4 HOH A 102 702 382 HOH HOH . G 4 HOH A 103 703 312 HOH HOH . G 4 HOH A 104 704 375 HOH HOH . G 4 HOH A 105 705 200 HOH HOH . G 4 HOH A 106 706 383 HOH HOH . G 4 HOH A 107 707 141 HOH HOH . G 4 HOH A 108 708 106 HOH HOH . G 4 HOH A 109 709 179 HOH HOH . G 4 HOH A 110 710 365 HOH HOH . G 4 HOH A 111 711 355 HOH HOH . G 4 HOH A 112 712 172 HOH HOH . G 4 HOH A 113 713 164 HOH HOH . G 4 HOH A 114 714 336 HOH HOH . G 4 HOH A 115 715 386 HOH HOH . G 4 HOH A 116 716 298 HOH HOH . G 4 HOH A 117 717 160 HOH HOH . G 4 HOH A 118 718 214 HOH HOH . G 4 HOH A 119 719 134 HOH HOH . G 4 HOH A 120 720 351 HOH HOH . G 4 HOH A 121 721 286 HOH HOH . G 4 HOH A 122 722 378 HOH HOH . G 4 HOH A 123 723 390 HOH HOH . G 4 HOH A 124 724 181 HOH HOH . G 4 HOH A 125 725 243 HOH HOH . G 4 HOH A 126 726 189 HOH HOH . G 4 HOH A 127 727 74 HOH HOH . G 4 HOH A 128 728 61 HOH HOH . G 4 HOH A 129 729 190 HOH HOH . G 4 HOH A 130 730 306 HOH HOH . G 4 HOH A 131 731 302 HOH HOH . G 4 HOH A 132 732 291 HOH HOH . G 4 HOH A 133 733 357 HOH HOH . G 4 HOH A 134 734 197 HOH HOH . G 4 HOH A 135 735 230 HOH HOH . G 4 HOH A 136 736 294 HOH HOH . H 4 HOH B 1 601 157 HOH HOH . H 4 HOH B 2 602 41 HOH HOH . H 4 HOH B 3 603 232 HOH HOH . H 4 HOH B 4 604 3 HOH HOH . H 4 HOH B 5 605 292 HOH HOH . H 4 HOH B 6 606 358 HOH HOH . H 4 HOH B 7 607 289 HOH HOH . H 4 HOH B 8 608 290 HOH HOH . H 4 HOH B 9 609 193 HOH HOH . H 4 HOH B 10 610 338 HOH HOH . H 4 HOH B 11 611 350 HOH HOH . H 4 HOH B 12 612 9 HOH HOH . H 4 HOH B 13 613 101 HOH HOH . H 4 HOH B 14 614 57 HOH HOH . H 4 HOH B 15 615 92 HOH HOH . H 4 HOH B 16 616 85 HOH HOH . H 4 HOH B 17 617 77 HOH HOH . H 4 HOH B 18 618 352 HOH HOH . H 4 HOH B 19 619 253 HOH HOH . H 4 HOH B 20 620 403 HOH HOH . H 4 HOH B 21 621 280 HOH HOH . H 4 HOH B 22 622 361 HOH HOH . H 4 HOH B 23 623 31 HOH HOH . H 4 HOH B 24 624 261 HOH HOH . H 4 HOH B 25 625 69 HOH HOH . H 4 HOH B 26 626 33 HOH HOH . H 4 HOH B 27 627 88 HOH HOH . H 4 HOH B 28 628 186 HOH HOH . H 4 HOH B 29 629 65 HOH HOH . H 4 HOH B 30 630 252 HOH HOH . H 4 HOH B 31 631 218 HOH HOH . H 4 HOH B 32 632 121 HOH HOH . H 4 HOH B 33 633 78 HOH HOH . H 4 HOH B 34 634 240 HOH HOH . H 4 HOH B 35 635 50 HOH HOH . H 4 HOH B 36 636 400 HOH HOH . H 4 HOH B 37 637 167 HOH HOH . H 4 HOH B 38 638 54 HOH HOH . H 4 HOH B 39 639 64 HOH HOH . H 4 HOH B 40 640 146 HOH HOH . H 4 HOH B 41 641 73 HOH HOH . H 4 HOH B 42 642 332 HOH HOH . H 4 HOH B 43 643 126 HOH HOH . H 4 HOH B 44 644 29 HOH HOH . H 4 HOH B 45 645 123 HOH HOH . H 4 HOH B 46 646 4 HOH HOH . H 4 HOH B 47 647 140 HOH HOH . H 4 HOH B 48 648 174 HOH HOH . H 4 HOH B 49 649 107 HOH HOH . H 4 HOH B 50 650 215 HOH HOH . H 4 HOH B 51 651 295 HOH HOH . H 4 HOH B 52 652 16 HOH HOH . H 4 HOH B 53 653 122 HOH HOH . H 4 HOH B 54 654 130 HOH HOH . H 4 HOH B 55 655 398 HOH HOH . H 4 HOH B 56 656 366 HOH HOH . H 4 HOH B 57 657 273 HOH HOH . H 4 HOH B 58 658 14 HOH HOH . H 4 HOH B 59 659 362 HOH HOH . H 4 HOH B 60 660 285 HOH HOH . H 4 HOH B 61 661 340 HOH HOH . H 4 HOH B 62 662 308 HOH HOH . H 4 HOH B 63 663 25 HOH HOH . H 4 HOH B 64 664 225 HOH HOH . H 4 HOH B 65 665 238 HOH HOH . H 4 HOH B 66 666 128 HOH HOH . H 4 HOH B 67 667 228 HOH HOH . H 4 HOH B 68 668 304 HOH HOH . H 4 HOH B 69 669 91 HOH HOH . H 4 HOH B 70 670 99 HOH HOH . H 4 HOH B 71 671 131 HOH HOH . H 4 HOH B 72 672 221 HOH HOH . H 4 HOH B 73 673 82 HOH HOH . H 4 HOH B 74 674 133 HOH HOH . H 4 HOH B 75 675 271 HOH HOH . H 4 HOH B 76 676 161 HOH HOH . H 4 HOH B 77 677 93 HOH HOH . H 4 HOH B 78 678 211 HOH HOH . H 4 HOH B 79 679 184 HOH HOH . H 4 HOH B 80 680 379 HOH HOH . H 4 HOH B 81 681 117 HOH HOH . H 4 HOH B 82 682 120 HOH HOH . H 4 HOH B 83 683 20 HOH HOH . H 4 HOH B 84 684 202 HOH HOH . H 4 HOH B 85 685 367 HOH HOH . H 4 HOH B 86 686 12 HOH HOH . H 4 HOH B 87 687 47 HOH HOH . H 4 HOH B 88 688 142 HOH HOH . H 4 HOH B 89 689 388 HOH HOH . H 4 HOH B 90 690 48 HOH HOH . H 4 HOH B 91 691 7 HOH HOH . H 4 HOH B 92 692 180 HOH HOH . H 4 HOH B 93 693 314 HOH HOH . H 4 HOH B 94 694 26 HOH HOH . H 4 HOH B 95 695 224 HOH HOH . H 4 HOH B 96 696 145 HOH HOH . H 4 HOH B 97 697 255 HOH HOH . H 4 HOH B 98 698 132 HOH HOH . H 4 HOH B 99 699 354 HOH HOH . H 4 HOH B 100 700 275 HOH HOH . H 4 HOH B 101 701 17 HOH HOH . H 4 HOH B 102 702 276 HOH HOH . H 4 HOH B 103 703 158 HOH HOH . H 4 HOH B 104 704 262 HOH HOH . H 4 HOH B 105 705 127 HOH HOH . H 4 HOH B 106 706 89 HOH HOH . H 4 HOH B 107 707 24 HOH HOH . H 4 HOH B 108 708 231 HOH HOH . H 4 HOH B 109 709 333 HOH HOH . H 4 HOH B 110 710 348 HOH HOH . H 4 HOH B 111 711 175 HOH HOH . H 4 HOH B 112 712 330 HOH HOH . H 4 HOH B 113 713 381 HOH HOH . H 4 HOH B 114 714 155 HOH HOH . H 4 HOH B 115 715 318 HOH HOH . H 4 HOH B 116 716 206 HOH HOH . H 4 HOH B 117 717 237 HOH HOH . H 4 HOH B 118 718 119 HOH HOH . H 4 HOH B 119 719 343 HOH HOH . H 4 HOH B 120 720 371 HOH HOH . H 4 HOH B 121 721 234 HOH HOH . H 4 HOH B 122 722 196 HOH HOH . H 4 HOH B 123 723 399 HOH HOH . H 4 HOH B 124 724 227 HOH HOH . H 4 HOH B 125 725 299 HOH HOH . H 4 HOH B 126 726 335 HOH HOH . H 4 HOH B 127 727 220 HOH HOH . H 4 HOH B 128 728 296 HOH HOH . H 4 HOH B 129 729 185 HOH HOH . H 4 HOH B 130 730 279 HOH HOH . H 4 HOH B 131 731 401 HOH HOH . H 4 HOH B 132 732 363 HOH HOH . H 4 HOH B 133 733 297 HOH HOH . H 4 HOH B 134 734 199 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 5.072 _atom_site.Cartn_y 48.868 _atom_site.Cartn_z 44.57 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 10.47 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 500 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #