data_5B6H
#
_model_server_result.job_id            Xov3reUg-Sw3J07R4wg-Pw 
_model_server_result.datetime_utc      '2025-02-05 13:01:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5b6h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    5B6H 
#
_exptl.entry_id    5B6H 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          116.56 
_cell.angle_gamma         90 
_cell.entry_id            5B6H 
_cell.length_a            60.875 
_cell.length_b            78.554 
_cell.length_c            53.885 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5B6H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 60.875 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O THR 111 A THR 117 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc2 A O ILE 114 A ILE 120 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc3 A OD1 ASP 124 A ASP 130 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? 
metalc ? metalc4 A OD2 ASP 124 A ASP 130 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? 
metalc ? metalc5 A OD1 ASP 125 A ASP 131 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc6 B O3' AMP . A AMP 501 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc7 C NA NA . A NA 502 1_555 F O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.191 ? 
metalc ? metalc8 C NA NA . A NA 502 1_555 F O HOH . A HOH 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc9 C NA NA . A NA 502 1_555 F O HOH . A HOH 631 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? 
metalc ? metalc10 C NA NA . A NA 502 1_555 F O HOH . A HOH 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? 
metalc ? metalc11 D NA NA . A NA 503 1_555 F O HOH . A HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc12 D NA NA . A NA 503 1_555 F O HOH . A HOH 636 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     5B6H 
_atom_sites.fract_transf_matrix[1][1]    0.016427 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.008211 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01273 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020747 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 AMP A 1 501 501 AMP AMP . 
C 3 NA A 1 502 502 NA NA . 
D 3 NA A 1 503 503 NA NA . 
E 4 CL A 1 504 504 CL CL . 
F 5 HOH A 1 601 42 HOH HOH . 
F 5 HOH A 2 602 30 HOH HOH . 
F 5 HOH A 3 603 21 HOH HOH . 
F 5 HOH A 4 604 40 HOH HOH . 
F 5 HOH A 5 605 43 HOH HOH . 
F 5 HOH A 6 606 24 HOH HOH . 
F 5 HOH A 7 607 22 HOH HOH . 
F 5 HOH A 8 608 28 HOH HOH . 
F 5 HOH A 9 609 6 HOH HOH . 
F 5 HOH A 10 610 13 HOH HOH . 
F 5 HOH A 11 611 33 HOH HOH . 
F 5 HOH A 12 612 44 HOH HOH . 
F 5 HOH A 13 613 12 HOH HOH . 
F 5 HOH A 14 614 9 HOH HOH . 
F 5 HOH A 15 615 5 HOH HOH . 
F 5 HOH A 16 616 34 HOH HOH . 
F 5 HOH A 17 617 14 HOH HOH . 
F 5 HOH A 18 618 18 HOH HOH . 
F 5 HOH A 19 619 11 HOH HOH . 
F 5 HOH A 20 620 10 HOH HOH . 
F 5 HOH A 21 621 3 HOH HOH . 
F 5 HOH A 22 622 16 HOH HOH . 
F 5 HOH A 23 623 39 HOH HOH . 
F 5 HOH A 24 624 36 HOH HOH . 
F 5 HOH A 25 625 31 HOH HOH . 
F 5 HOH A 26 626 4 HOH HOH . 
F 5 HOH A 27 627 19 HOH HOH . 
F 5 HOH A 28 628 7 HOH HOH . 
F 5 HOH A 29 629 38 HOH HOH . 
F 5 HOH A 30 630 8 HOH HOH . 
F 5 HOH A 31 631 46 HOH HOH . 
F 5 HOH A 32 632 27 HOH HOH . 
F 5 HOH A 33 633 47 HOH HOH . 
F 5 HOH A 34 634 32 HOH HOH . 
F 5 HOH A 35 635 45 HOH HOH . 
F 5 HOH A 36 636 41 HOH HOH . 
F 5 HOH A 37 637 35 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . B 2 17.301 -8.563 7.6 1 19.89 ? P AMP 501 A 1 
HETATM 2 O O1P AMP . . . B 2 16.287 -9.741 7.321 1 20.03 ? O1P AMP 501 A 1 
HETATM 3 O O2P AMP . . . B 2 16.656 -7.225 7.973 1 19.63 ? O2P AMP 501 A 1 
HETATM 4 O O3P AMP . . . B 2 18.514 -9.009 8.337 1 19.18 ? O3P AMP 501 A 1 
HETATM 5 O O5' AMP . . . B 2 17.883 -8.17 6.026 1 19.21 ? O5' AMP 501 A 1 
HETATM 6 C C5' AMP . . . B 2 19.154 -8.57 5.549 1 18.46 ? C5' AMP 501 A 1 
HETATM 7 C C4' AMP . . . B 2 19.275 -7.974 4.078 1 17.9 ? C4' AMP 501 A 1 
HETATM 8 O O4' AMP . . . B 2 18.438 -8.793 3.209 1 18.33 ? O4' AMP 501 A 1 
HETATM 9 C C3' AMP . . . B 2 18.766 -6.54 3.937 1 17.71 ? C3' AMP 501 A 1 
HETATM 10 O O3' AMP . . . B 2 19.703 -5.568 4.501 1 17.24 ? O3' AMP 501 A 1 
HETATM 11 C C2' AMP . . . B 2 18.554 -6.525 2.433 1 17.83 ? C2' AMP 501 A 1 
HETATM 12 O O2' AMP . . . B 2 19.863 -6.272 1.856 1 17.39 ? O2' AMP 501 A 1 
HETATM 13 C C1' AMP . . . B 2 18.099 -7.928 2.07 1 18.27 ? C1' AMP 501 A 1 
HETATM 14 N N9 AMP . . . B 2 16.674 -8.061 1.716 1 18.96 ? N9 AMP 501 A 1 
HETATM 15 C C8 AMP . . . B 2 15.739 -8.768 2.394 1 19.48 ? C8 AMP 501 A 1 
HETATM 16 N N7 AMP . . . B 2 14.545 -8.739 1.753 1 19.97 ? N7 AMP 501 A 1 
HETATM 17 C C5 AMP . . . B 2 14.696 -7.988 0.708 1 19.85 ? C5 AMP 501 A 1 
HETATM 18 C C6 AMP . . . B 2 13.867 -7.591 -0.399 1 20.44 ? C6 AMP 501 A 1 
HETATM 19 N N6 AMP . . . B 2 12.585 -7.923 -0.473 1 21.25 ? N6 AMP 501 A 1 
HETATM 20 N N1 AMP . . . B 2 14.442 -6.862 -1.36 1 20.15 ? N1 AMP 501 A 1 
HETATM 21 C C2 AMP . . . B 2 15.735 -6.502 -1.343 1 19.46 ? C2 AMP 501 A 1 
HETATM 22 N N3 AMP . . . B 2 16.566 -6.863 -0.377 1 19.11 ? N3 AMP 501 A 1 
HETATM 23 C C4 AMP . . . B 2 16.089 -7.566 0.663 1 19.09 ? C4 AMP 501 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#