data_5B6V # _model_server_result.job_id zvqq9DilP6PJwB4041tGZQ _model_server_result.datetime_utc '2024-11-13 04:22:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5b6v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":603}' # _entry.id 5B6V # _exptl.entry_id 5B6V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 100.202 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEPTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5B6V _cell.length_a 62.5 _cell.length_b 62.5 _cell.length_c 112 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5B6V _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -y-1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -62.5 0 0 3 'crystal symmetry operation' 3_445 -x+y-1,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -31.25 -54.126588 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 300 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.311 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C7 H16' _chem_comp.formula_weight 100.202 _chem_comp.id HP6 _chem_comp.mon_nstd_flag . _chem_comp.name HEPTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 C21 HP6 sing 220 n n C20 H201 HP6 sing 221 n n C20 H202 HP6 sing 222 n n C20 H203 HP6 sing 223 n n C21 C22 HP6 sing 224 n n C21 H211 HP6 sing 225 n n C21 H212 HP6 sing 226 n n C22 C23 HP6 sing 227 n n C22 H221 HP6 sing 228 n n C22 H222 HP6 sing 229 n n C23 C24 HP6 sing 230 n n C23 H231 HP6 sing 231 n n C23 H232 HP6 sing 232 n n C24 C25 HP6 sing 233 n n C24 H241 HP6 sing 234 n n C24 H242 HP6 sing 235 n n C25 C26 HP6 sing 236 n n C25 H251 HP6 sing 237 n n C25 H252 HP6 sing 238 n n C26 H261 HP6 sing 239 n n C26 H262 HP6 sing 240 n n C26 H263 HP6 sing 241 n n # _atom_sites.entry_id 5B6V _atom_sites.fract_transf_matrix[1][1] 0.016 _atom_sites.fract_transf_matrix[1][2] 0.009238 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018475 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008929 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 300 300 RET RET . C 3 L2P A 1 600 600 L2P L2P . D 4 TRD A 1 601 601 TRD TRD . E 5 D10 A 1 602 602 D10 D10 . F 6 HP6 A 1 603 603 HP6 HP6 . G 7 OCT A 1 604 604 OCT OCT . H 7 OCT A 1 605 605 OCT OCT . I 8 MYS A 1 606 606 MYS MYS . J 9 UND A 1 607 607 UND UND . K 3 L2P A 1 608 608 L2P L2P . L 3 L2P A 1 609 609 L2P L2P . M 8 MYS A 1 610 610 MYS MYS . N 10 DD9 A 1 611 611 DD9 DD9 . O 11 C14 A 1 612 612 C14 C14 . P 7 OCT A 1 613 613 OCT OCT . Q 9 UND A 1 614 614 UND UND . R 12 HOH A 1 400 400 HOH HOH . R 12 HOH A 2 401 401 HOH HOH . R 12 HOH A 3 402 402 HOH HOH . R 12 HOH A 4 403 403 HOH HOH . R 12 HOH A 5 404 404 HOH HOH . R 12 HOH A 6 405 405 HOH HOH . R 12 HOH A 7 406 406 HOH HOH . R 12 HOH A 8 407 407 HOH HOH . R 12 HOH A 9 408 408 HOH HOH . R 12 HOH A 10 414 414 HOH HOH . R 12 HOH A 11 425 425 HOH HOH . R 12 HOH A 12 424 424 HOH HOH . R 12 HOH A 13 433 433 HOH HOH . R 12 HOH A 14 438 438 HOH HOH . R 12 HOH A 15 441 441 HOH HOH . R 12 HOH A 16 442 442 HOH HOH . R 12 HOH A 17 443 443 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C20 HP6 . . . F 6 -11.679 -34.108 -13.306 1 63.49 ? C20 HP6 603 A 1 HETATM 2 C C21 HP6 . . . F 6 -12.277 -34.771 -12.067 1 69.05 ? C21 HP6 603 A 1 HETATM 3 C C22 HP6 . . . F 6 -11.931 -33.954 -10.823 1 72.96 ? C22 HP6 603 A 1 HETATM 4 C C23 HP6 . . . F 6 -12.817 -34.409 -9.665 1 68.93 ? C23 HP6 603 A 1 HETATM 5 C C24 HP6 . . . F 6 -12.03 -34.378 -8.356 1 69.08 ? C24 HP6 603 A 1 HETATM 6 C C25 HP6 . . . F 6 -12.918 -34.904 -7.23 1 71.08 ? C25 HP6 603 A 1 HETATM 7 C C26 HP6 . . . F 6 -12.068 -35.212 -5.998 1 74.72 ? C26 HP6 603 A 1 HETATM 8 H H201 HP6 . . . F 6 -11.902 -34.631 -14.092 1 76.18 ? H201 HP6 603 A 1 HETATM 9 H H202 HP6 . . . F 6 -12.041 -33.213 -13.4 1 76.18 ? H202 HP6 603 A 1 HETATM 10 H H203 HP6 . . . F 6 -10.715 -34.059 -13.213 1 76.18 ? H203 HP6 603 A 1 HETATM 11 H H211 HP6 . . . F 6 -13.241 -34.821 -12.162 1 82.86 ? H211 HP6 603 A 1 HETATM 12 H H212 HP6 . . . F 6 -11.916 -35.667 -11.975 1 82.86 ? H212 HP6 603 A 1 HETATM 13 H H221 HP6 . . . F 6 -10.999 -34.092 -10.593 1 87.56 ? H221 HP6 603 A 1 HETATM 14 H H222 HP6 . . . F 6 -12.085 -33.013 -10.999 1 87.56 ? H222 HP6 603 A 1 HETATM 15 H H231 HP6 . . . F 6 -13.582 -33.817 -9.594 1 82.72 ? H231 HP6 603 A 1 HETATM 16 H H232 HP6 . . . F 6 -13.126 -35.313 -9.833 1 82.72 ? H232 HP6 603 A 1 HETATM 17 H H241 HP6 . . . F 6 -11.242 -34.938 -8.437 1 82.9 ? H241 HP6 603 A 1 HETATM 18 H H242 HP6 . . . F 6 -11.762 -33.467 -8.16 1 82.9 ? H242 HP6 603 A 1 HETATM 19 H H251 HP6 . . . F 6 -13.582 -34.234 -7.004 1 85.3 ? H251 HP6 603 A 1 HETATM 20 H H252 HP6 . . . F 6 -13.365 -35.713 -7.524 1 85.3 ? H252 HP6 603 A 1 HETATM 21 H H261 HP6 . . . F 6 -11.405 -35.883 -6.222 1 89.67 ? H261 HP6 603 A 1 HETATM 22 H H262 HP6 . . . F 6 -12.638 -35.545 -5.287 1 89.67 ? H262 HP6 603 A 1 HETATM 23 H H263 HP6 . . . F 6 -11.622 -34.403 -5.702 1 89.67 ? H263 HP6 603 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 23 #