data_5B6V # _model_server_result.job_id NzpJN-9ywCQO4Y3BUNcdsg _model_server_result.datetime_utc '2024-11-26 16:07:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5b6v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":604}' # _entry.id 5B6V # _exptl.entry_id 5B6V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 114.229 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-OCTANE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5B6V _cell.length_a 62.5 _cell.length_b 62.5 _cell.length_c 112 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5B6V _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -y-1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -62.5 0 0 3 'crystal symmetry operation' 3_445 -x+y-1,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -31.25 -54.126588 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N ? 7 P N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 300 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.311 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H18' _chem_comp.formula_weight 114.229 _chem_comp.id OCT _chem_comp.mon_nstd_flag . _chem_comp.name N-OCTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OCT sing 506 n n C1 H11 OCT sing 507 n n C1 H12 OCT sing 508 n n C1 H13 OCT sing 509 n n C2 C3 OCT sing 510 n n C2 H21 OCT sing 511 n n C2 H22 OCT sing 512 n n C3 C4 OCT sing 513 n n C3 H31 OCT sing 514 n n C3 H32 OCT sing 515 n n C4 C5 OCT sing 516 n n C4 H41 OCT sing 517 n n C4 H42 OCT sing 518 n n C5 C6 OCT sing 519 n n C5 H51 OCT sing 520 n n C5 H52 OCT sing 521 n n C6 C7 OCT sing 522 n n C6 H61 OCT sing 523 n n C6 H62 OCT sing 524 n n C7 C8 OCT sing 525 n n C7 H71 OCT sing 526 n n C7 H72 OCT sing 527 n n C8 H81 OCT sing 528 n n C8 H82 OCT sing 529 n n C8 H83 OCT sing 530 n n # _atom_sites.entry_id 5B6V _atom_sites.fract_transf_matrix[1][1] 0.016 _atom_sites.fract_transf_matrix[1][2] 0.009238 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018475 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008929 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 300 300 RET RET . C 3 L2P A 1 600 600 L2P L2P . D 4 TRD A 1 601 601 TRD TRD . E 5 D10 A 1 602 602 D10 D10 . F 6 HP6 A 1 603 603 HP6 HP6 . G 7 OCT A 1 604 604 OCT OCT . H 7 OCT A 1 605 605 OCT OCT . I 8 MYS A 1 606 606 MYS MYS . J 9 UND A 1 607 607 UND UND . K 3 L2P A 1 608 608 L2P L2P . L 3 L2P A 1 609 609 L2P L2P . M 8 MYS A 1 610 610 MYS MYS . N 10 DD9 A 1 611 611 DD9 DD9 . O 11 C14 A 1 612 612 C14 C14 . P 7 OCT A 1 613 613 OCT OCT . Q 9 UND A 1 614 614 UND UND . R 12 HOH A 1 400 400 HOH HOH . R 12 HOH A 2 401 401 HOH HOH . R 12 HOH A 3 402 402 HOH HOH . R 12 HOH A 4 403 403 HOH HOH . R 12 HOH A 5 404 404 HOH HOH . R 12 HOH A 6 405 405 HOH HOH . R 12 HOH A 7 406 406 HOH HOH . R 12 HOH A 8 407 407 HOH HOH . R 12 HOH A 9 408 408 HOH HOH . R 12 HOH A 10 414 414 HOH HOH . R 12 HOH A 11 425 425 HOH HOH . R 12 HOH A 12 424 424 HOH HOH . R 12 HOH A 13 433 433 HOH HOH . R 12 HOH A 14 438 438 HOH HOH . R 12 HOH A 15 441 441 HOH HOH . R 12 HOH A 16 442 442 HOH HOH . R 12 HOH A 17 443 443 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OCT . . . G 7 -1.057 -10.711 6.523 1 73.5 ? C1 OCT 604 A 1 HETATM 2 C C2 OCT . . . G 7 -1.028 -9.652 7.621 1 67.56 ? C2 OCT 604 A 1 HETATM 3 C C3 OCT . . . G 7 -0.877 -10.338 8.976 1 69.94 ? C3 OCT 604 A 1 HETATM 4 C C4 OCT . . . G 7 -1.04 -9.306 10.087 1 70.24 ? C4 OCT 604 A 1 HETATM 5 C C5 OCT . . . G 7 -1.138 -10.024 11.429 1 75.64 ? C5 OCT 604 A 1 HETATM 6 C C6 OCT . . . G 7 -0.329 -9.255 12.47 1 76.01 ? C6 OCT 604 A 1 HETATM 7 C C7 OCT . . . G 7 -0.746 -9.699 13.868 1 70.33 ? C7 OCT 604 A 1 HETATM 8 C C8 OCT . . . G 7 -0.325 -8.634 14.873 1 78.31 ? C8 OCT 604 A 1 HETATM 9 H H11 OCT . . . G 7 -1.806 -11.309 6.671 1 88.2 ? H11 OCT 604 A 1 HETATM 10 H H12 OCT . . . G 7 -1.153 -10.279 5.66 1 88.2 ? H12 OCT 604 A 1 HETATM 11 H H13 OCT . . . G 7 -0.23 -11.218 6.541 1 88.2 ? H13 OCT 604 A 1 HETATM 12 H H21 OCT . . . G 7 -1.855 -9.145 7.605 1 81.07 ? H21 OCT 604 A 1 HETATM 13 H H22 OCT . . . G 7 -0.278 -9.054 7.475 1 81.07 ? H22 OCT 604 A 1 HETATM 14 H H31 OCT . . . G 7 -1.557 -11.024 9.069 1 83.93 ? H31 OCT 604 A 1 HETATM 15 H H32 OCT . . . G 7 0.002 -10.743 9.037 1 83.93 ? H32 OCT 604 A 1 HETATM 16 H H41 OCT . . . G 7 -1.848 -8.791 9.935 1 84.28 ? H41 OCT 604 A 1 HETATM 17 H H42 OCT . . . G 7 -0.273 -8.712 10.093 1 84.28 ? H42 OCT 604 A 1 HETATM 18 H H51 OCT . . . G 7 -2.066 -10.067 11.707 1 90.77 ? H51 OCT 604 A 1 HETATM 19 H H52 OCT . . . G 7 -0.784 -10.923 11.342 1 90.77 ? H52 OCT 604 A 1 HETATM 20 H H61 OCT . . . G 7 0.616 -9.434 12.342 1 91.21 ? H61 OCT 604 A 1 HETATM 21 H H62 OCT . . . G 7 -0.494 -8.304 12.37 1 91.21 ? H62 OCT 604 A 1 HETATM 22 H H71 OCT . . . G 7 -0.313 -10.539 14.085 1 84.4 ? H71 OCT 604 A 1 HETATM 23 H H72 OCT . . . G 7 -1.709 -9.812 13.899 1 84.4 ? H72 OCT 604 A 1 HETATM 24 H H81 OCT . . . G 7 -0.588 -8.91 15.765 1 93.98 ? H81 OCT 604 A 1 HETATM 25 H H82 OCT . . . G 7 -0.757 -7.794 14.654 1 93.98 ? H82 OCT 604 A 1 HETATM 26 H H83 OCT . . . G 7 0.638 -8.521 14.84 1 93.98 ? H83 OCT 604 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #