data_5B6V # _model_server_result.job_id 3eBFiygeTUSgEBkCDO2KOg _model_server_result.datetime_utc '2024-11-13 04:39:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5b6v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":612}' # _entry.id 5B6V # _exptl.entry_id 5B6V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 198.388 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TETRADECANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5B6V _cell.length_a 62.5 _cell.length_b 62.5 _cell.length_c 112 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5B6V _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -y-1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -62.5 0 0 3 'crystal symmetry operation' 3_445 -x+y-1,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -31.25 -54.126588 0 # _struct_asym.details ? _struct_asym.entity_id 11 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 300 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.311 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C14 H30' _chem_comp.formula_weight 198.388 _chem_comp.id C14 _chem_comp.mon_nstd_flag . _chem_comp.name TETRADECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 C14 sing 70 n n C01 H011 C14 sing 71 n n C01 H012 C14 sing 72 n n C01 H013 C14 sing 73 n n C02 C03 C14 sing 74 n n C02 H021 C14 sing 75 n n C02 H022 C14 sing 76 n n C03 C04 C14 sing 77 n n C03 H031 C14 sing 78 n n C03 H032 C14 sing 79 n n C04 C05 C14 sing 80 n n C04 H041 C14 sing 81 n n C04 H042 C14 sing 82 n n C05 C06 C14 sing 83 n n C05 H051 C14 sing 84 n n C05 H052 C14 sing 85 n n C06 C07 C14 sing 86 n n C06 H061 C14 sing 87 n n C06 H062 C14 sing 88 n n C07 C08 C14 sing 89 n n C07 H071 C14 sing 90 n n C07 H072 C14 sing 91 n n C08 C09 C14 sing 92 n n C08 H081 C14 sing 93 n n C08 H082 C14 sing 94 n n C09 C10 C14 sing 95 n n C09 H091 C14 sing 96 n n C09 H092 C14 sing 97 n n C10 C11 C14 sing 98 n n C10 H101 C14 sing 99 n n C10 H102 C14 sing 100 n n C11 C12 C14 sing 101 n n C11 H111 C14 sing 102 n n C11 H112 C14 sing 103 n n C12 C13 C14 sing 104 n n C12 H121 C14 sing 105 n n C12 H122 C14 sing 106 n n C13 C14 C14 sing 107 n n C13 H131 C14 sing 108 n n C13 H132 C14 sing 109 n n C14 H141 C14 sing 110 n n C14 H142 C14 sing 111 n n C14 H143 C14 sing 112 n n # _atom_sites.entry_id 5B6V _atom_sites.fract_transf_matrix[1][1] 0.016 _atom_sites.fract_transf_matrix[1][2] 0.009238 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018475 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008929 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 300 300 RET RET . C 3 L2P A 1 600 600 L2P L2P . D 4 TRD A 1 601 601 TRD TRD . E 5 D10 A 1 602 602 D10 D10 . F 6 HP6 A 1 603 603 HP6 HP6 . G 7 OCT A 1 604 604 OCT OCT . H 7 OCT A 1 605 605 OCT OCT . I 8 MYS A 1 606 606 MYS MYS . J 9 UND A 1 607 607 UND UND . K 3 L2P A 1 608 608 L2P L2P . L 3 L2P A 1 609 609 L2P L2P . M 8 MYS A 1 610 610 MYS MYS . N 10 DD9 A 1 611 611 DD9 DD9 . O 11 C14 A 1 612 612 C14 C14 . P 7 OCT A 1 613 613 OCT OCT . Q 9 UND A 1 614 614 UND UND . R 12 HOH A 1 400 400 HOH HOH . R 12 HOH A 2 401 401 HOH HOH . R 12 HOH A 3 402 402 HOH HOH . R 12 HOH A 4 403 403 HOH HOH . R 12 HOH A 5 404 404 HOH HOH . R 12 HOH A 6 405 405 HOH HOH . R 12 HOH A 7 406 406 HOH HOH . R 12 HOH A 8 407 407 HOH HOH . R 12 HOH A 9 408 408 HOH HOH . R 12 HOH A 10 414 414 HOH HOH . R 12 HOH A 11 425 425 HOH HOH . R 12 HOH A 12 424 424 HOH HOH . R 12 HOH A 13 433 433 HOH HOH . R 12 HOH A 14 438 438 HOH HOH . R 12 HOH A 15 441 441 HOH HOH . R 12 HOH A 16 442 442 HOH HOH . R 12 HOH A 17 443 443 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 C14 . . . O 11 -28.63 -14.112 13.405 1 76.03 ? C01 C14 612 A 1 HETATM 2 C C02 C14 . . . O 11 -27.829 -14.25 12.112 1 73.84 ? C02 C14 612 A 1 HETATM 3 C C03 C14 . . . O 11 -27.066 -15.574 12.135 1 79.84 ? C03 C14 612 A 1 HETATM 4 C C04 C14 . . . O 11 -26.007 -15.596 11.033 1 92.37 ? C04 C14 612 A 1 HETATM 5 C C05 C14 . . . O 11 -26.595 -16.152 9.737 1 96.16 ? C05 C14 612 A 1 HETATM 6 C C06 C14 . . . O 11 -25.461 -16.622 8.828 1 85.7 ? C06 C14 612 A 1 HETATM 7 C C07 C14 . . . O 11 -26.032 -17.028 7.472 1 78.55 ? C07 C14 612 A 1 HETATM 8 C C08 C14 . . . O 11 -24.988 -17.816 6.683 1 65.26 ? C08 C14 612 A 1 HETATM 9 C C09 C14 . . . O 11 -25.574 -18.225 5.331 1 70.33 ? C09 C14 612 A 1 HETATM 10 C C10 C14 . . . O 11 -25.599 -17.029 4.38 1 69.49 ? C10 C14 612 A 1 HETATM 11 C C11 C14 . . . O 11 -27.036 -16.541 4.204 1 83.16 ? C11 C14 612 A 1 HETATM 12 C C12 C14 . . . O 11 -27.057 -15.312 3.295 1 71.09 ? C12 C14 612 A 1 HETATM 13 C C13 C14 . . . O 11 -27.333 -15.717 1.847 1 71.34 ? C13 C14 612 A 1 HETATM 14 C C14 C14 . . . O 11 -28.008 -14.555 1.123 1 72.56 ? C14 C14 612 A 1 HETATM 15 H H011 C14 . . . O 11 -29.258 -14.848 13.477 1 91.24 ? H011 C14 612 A 1 HETATM 16 H H012 C14 . . . O 11 -29.116 -13.272 13.396 1 91.24 ? H012 C14 612 A 1 HETATM 17 H H013 C14 . . . O 11 -28.025 -14.128 14.163 1 91.24 ? H013 C14 612 A 1 HETATM 18 H H021 C14 . . . O 11 -27.201 -13.515 12.04 1 88.61 ? H021 C14 612 A 1 HETATM 19 H H022 C14 . . . O 11 -28.433 -14.237 11.353 1 88.61 ? H022 C14 612 A 1 HETATM 20 H H031 C14 . . . O 11 -26.634 -15.68 12.997 1 95.81 ? H031 C14 612 A 1 HETATM 21 H H032 C14 . . . O 11 -27.688 -16.305 11.996 1 95.81 ? H032 C14 612 A 1 HETATM 22 H H041 C14 . . . O 11 -25.265 -16.154 11.313 1 110.84 ? H041 C14 612 A 1 HETATM 23 H H042 C14 . . . O 11 -25.688 -14.693 10.878 1 110.84 ? H042 C14 612 A 1 HETATM 24 H H051 C14 . . . O 11 -27.178 -16.9 9.941 1 115.39 ? H051 C14 612 A 1 HETATM 25 H H052 C14 . . . O 11 -27.103 -15.458 9.288 1 115.39 ? H052 C14 612 A 1 HETATM 26 H H061 C14 . . . O 11 -25.016 -17.383 9.233 1 102.84 ? H061 C14 612 A 1 HETATM 27 H H062 C14 . . . O 11 -24.823 -15.901 8.708 1 102.84 ? H062 C14 612 A 1 HETATM 28 H H071 C14 . . . O 11 -26.278 -16.232 6.975 1 94.26 ? H071 C14 612 A 1 HETATM 29 H H072 C14 . . . O 11 -26.818 -17.58 7.606 1 94.26 ? H072 C14 612 A 1 HETATM 30 H H081 C14 . . . O 11 -24.204 -17.263 6.542 1 78.32 ? H081 C14 612 A 1 HETATM 31 H H082 C14 . . . O 11 -24.738 -18.61 7.181 1 78.32 ? H082 C14 612 A 1 HETATM 32 H H091 C14 . . . O 11 -26.478 -18.552 5.459 1 84.4 ? H091 C14 612 A 1 HETATM 33 H H092 C14 . . . O 11 -25.03 -18.93 4.946 1 84.4 ? H092 C14 612 A 1 HETATM 34 H H101 C14 . . . O 11 -25.058 -16.313 4.748 1 83.38 ? H101 C14 612 A 1 HETATM 35 H H102 C14 . . . O 11 -25.241 -17.294 3.519 1 83.38 ? H102 C14 612 A 1 HETATM 36 H H111 C14 . . . O 11 -27.406 -16.308 5.07 1 99.79 ? H111 C14 612 A 1 HETATM 37 H H112 C14 . . . O 11 -27.569 -17.246 3.805 1 99.79 ? H112 C14 612 A 1 HETATM 38 H H121 C14 . . . O 11 -26.198 -14.864 3.343 1 85.3 ? H121 C14 612 A 1 HETATM 39 H H122 C14 . . . O 11 -27.751 -14.705 3.595 1 85.3 ? H122 C14 612 A 1 HETATM 40 H H131 C14 . . . O 11 -27.917 -16.492 1.832 1 85.61 ? H131 C14 612 A 1 HETATM 41 H H132 C14 . . . O 11 -26.497 -15.933 1.405 1 85.61 ? H132 C14 612 A 1 HETATM 42 H H141 C14 . . . O 11 -28.184 -14.806 0.203 1 87.07 ? H141 C14 612 A 1 HETATM 43 H H142 C14 . . . O 11 -28.844 -14.341 1.565 1 87.07 ? H142 C14 612 A 1 HETATM 44 H H143 C14 . . . O 11 -27.425 -13.78 1.141 1 87.07 ? H143 C14 612 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #