data_5B6Z # _model_server_result.job_id tc5ujfnvn8zVjv1CfZbr5A _model_server_result.datetime_utc '2024-11-13 05:13:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5b6z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":610}' # _entry.id 5B6Z # _exptl.entry_id 5B6Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 212.415 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PENTADECANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5B6Z _cell.length_a 62.5 _cell.length_b 62.5 _cell.length_c 112 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5B6Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -y-1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -62.5 0 0 3 'crystal symmetry operation' 3_445 -x+y-1,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -31.25 -54.126588 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 I N N ? 8 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 216 A LYS 216 1_555 B C15 RET . A RET 300 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.311 ? covale ? covale2 A NZ LYS 216 A LYS 216 1_555 B C15 RET . A RET 300 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.31 ? # _chem_comp.formula 'C15 H32' _chem_comp.formula_weight 212.415 _chem_comp.id MYS _chem_comp.mon_nstd_flag . _chem_comp.name PENTADECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MYS sing 460 n n C1 H11 MYS sing 461 n n C1 H12 MYS sing 462 n n C1 H13 MYS sing 463 n n C2 C3 MYS sing 464 n n C2 H21 MYS sing 465 n n C2 H22 MYS sing 466 n n C3 C4 MYS sing 467 n n C3 H31 MYS sing 468 n n C3 H32 MYS sing 469 n n C4 C5 MYS sing 470 n n C4 H41 MYS sing 471 n n C4 H42 MYS sing 472 n n C5 C6 MYS sing 473 n n C5 H51 MYS sing 474 n n C5 H52 MYS sing 475 n n C6 C7 MYS sing 476 n n C6 H61 MYS sing 477 n n C6 H62 MYS sing 478 n n C7 C8 MYS sing 479 n n C7 H71 MYS sing 480 n n C7 H72 MYS sing 481 n n C8 C9 MYS sing 482 n n C8 H81 MYS sing 483 n n C8 H82 MYS sing 484 n n C9 C10 MYS sing 485 n n C9 H91 MYS sing 486 n n C9 H92 MYS sing 487 n n C10 C11 MYS sing 488 n n C10 H101 MYS sing 489 n n C10 H102 MYS sing 490 n n C11 C12 MYS sing 491 n n C11 H111 MYS sing 492 n n C11 H112 MYS sing 493 n n C12 C13 MYS sing 494 n n C12 H121 MYS sing 495 n n C12 H122 MYS sing 496 n n C13 C14 MYS sing 497 n n C13 H131 MYS sing 498 n n C13 H132 MYS sing 499 n n C14 C15 MYS sing 500 n n C14 H141 MYS sing 501 n n C14 H142 MYS sing 502 n n C15 H151 MYS sing 503 n n C15 H152 MYS sing 504 n n C15 H153 MYS sing 505 n n # _atom_sites.entry_id 5B6Z _atom_sites.fract_transf_matrix[1][1] 0.016 _atom_sites.fract_transf_matrix[1][2] 0.009238 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018475 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008929 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 300 300 RET RET . C 3 L2P A 1 600 600 L2P L2P . D 4 TRD A 1 601 601 TRD TRD . E 5 D10 A 1 602 602 D10 D10 . F 6 HP6 A 1 603 603 HP6 HP6 . G 7 OCT A 1 604 604 OCT OCT . H 7 OCT A 1 605 605 OCT OCT . I 8 MYS A 1 606 606 MYS MYS . J 9 UND A 1 607 607 UND UND . K 3 L2P A 1 608 608 L2P L2P . L 3 L2P A 1 609 609 L2P L2P . M 8 MYS A 1 610 610 MYS MYS . N 10 DD9 A 1 611 611 DD9 DD9 . O 11 C14 A 1 612 612 C14 C14 . P 7 OCT A 1 613 613 OCT OCT . Q 9 UND A 1 614 614 UND UND . R 12 HOH A 1 400 400 HOH HOH . R 12 HOH A 2 401 401 HOH HOH . R 12 HOH A 3 402 402 HOH HOH . R 12 HOH A 4 403 403 HOH HOH . R 12 HOH A 5 404 404 HOH HOH . R 12 HOH A 6 405 405 HOH HOH . R 12 HOH A 7 406 406 HOH HOH . R 12 HOH A 8 407 407 HOH HOH . R 12 HOH A 9 408 408 HOH HOH . R 12 HOH A 10 414 414 HOH HOH . R 12 HOH A 11 425 425 HOH HOH . R 12 HOH A 12 424 424 HOH HOH . R 12 HOH A 13 433 433 HOH HOH . R 12 HOH A 14 438 438 HOH HOH . R 12 HOH A 15 441 441 HOH HOH . R 12 HOH A 16 442 442 HOH HOH . R 12 HOH A 17 443 443 HOH HOH . R 12 HOH A 18 451 451 HOH HOH . R 12 HOH A 19 453 453 HOH HOH . R 12 HOH A 20 454 454 HOH HOH . R 12 HOH A 21 455 455 HOH HOH . R 12 HOH A 22 456 456 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYS . . . M 8 -1.158 -20.58 3.018 1 80.19 ? C1 MYS 610 A 1 HETATM 2 C C2 MYS . . . M 8 -2.302 -21.239 3.786 1 75.87 ? C2 MYS 610 A 1 HETATM 3 C C3 MYS . . . M 8 -2.067 -22.745 3.873 1 70.53 ? C3 MYS 610 A 1 HETATM 4 C C4 MYS . . . M 8 -2.48 -23.405 2.558 1 79.38 ? C4 MYS 610 A 1 HETATM 5 C C5 MYS . . . M 8 -2.042 -24.868 2.545 1 79.45 ? C5 MYS 610 A 1 HETATM 6 C C6 MYS . . . M 8 -2.799 -25.652 3.615 1 86.96 ? C6 MYS 610 A 1 HETATM 7 C C7 MYS . . . M 8 -3.369 -26.929 3.001 1 88.51 ? C7 MYS 610 A 1 HETATM 8 C C8 MYS . . . M 8 -3.937 -27.818 4.106 1 73.79 ? C8 MYS 610 A 1 HETATM 9 C C9 MYS . . . M 8 -2.821 -28.635 4.756 1 80.9 ? C9 MYS 610 A 1 HETATM 10 C C10 MYS . . . M 8 -2.627 -28.189 6.204 1 78.27 ? C10 MYS 610 A 1 HETATM 11 C C11 MYS . . . M 8 -1.549 -29.06 6.847 1 84.69 ? C11 MYS 610 A 1 HETATM 12 C C12 MYS . . . M 8 -1.518 -28.828 8.355 1 85.94 ? C12 MYS 610 A 1 HETATM 13 C C13 MYS . . . M 8 -0.479 -27.76 8.693 1 86.76 ? C13 MYS 610 A 1 HETATM 14 C C14 MYS . . . M 8 -0.533 -27.424 10.183 1 88.66 ? C14 MYS 610 A 1 HETATM 15 C C15 MYS . . . M 8 -0.057 -28.613 11.018 1 78.14 ? C15 MYS 610 A 1 HETATM 16 H H11 MYS . . . M 8 -1.312 -19.624 2.966 1 96.22 ? H11 MYS 610 A 1 HETATM 17 H H12 MYS . . . M 8 -0.321 -20.748 3.478 1 96.22 ? H12 MYS 610 A 1 HETATM 18 H H13 MYS . . . M 8 -1.115 -20.95 2.122 1 96.22 ? H13 MYS 610 A 1 HETATM 19 H H21 MYS . . . M 8 -2.345 -20.867 4.681 1 91.04 ? H21 MYS 610 A 1 HETATM 20 H H22 MYS . . . M 8 -3.139 -21.07 3.326 1 91.04 ? H22 MYS 610 A 1 HETATM 21 H H31 MYS . . . M 8 -2.595 -23.113 4.599 1 84.64 ? H31 MYS 610 A 1 HETATM 22 H H32 MYS . . . M 8 -1.127 -22.916 4.039 1 84.64 ? H32 MYS 610 A 1 HETATM 23 H H41 MYS . . . M 8 -3.444 -23.357 2.463 1 95.26 ? H41 MYS 610 A 1 HETATM 24 H H42 MYS . . . M 8 -2.061 -22.938 1.818 1 95.26 ? H42 MYS 610 A 1 HETATM 25 H H51 MYS . . . M 8 -1.09 -24.92 2.722 1 95.34 ? H51 MYS 610 A 1 HETATM 26 H H52 MYS . . . M 8 -2.228 -25.251 1.674 1 95.34 ? H52 MYS 610 A 1 HETATM 27 H H61 MYS . . . M 8 -3.524 -25.109 3.962 1 104.36 ? H61 MYS 610 A 1 HETATM 28 H H62 MYS . . . M 8 -2.193 -25.882 4.337 1 104.36 ? H62 MYS 610 A 1 HETATM 29 H H71 MYS . . . M 8 -2.665 -27.405 2.533 1 106.21 ? H71 MYS 610 A 1 HETATM 30 H H72 MYS . . . M 8 -4.074 -26.7 2.376 1 106.21 ? H72 MYS 610 A 1 HETATM 31 H H81 MYS . . . M 8 -4.361 -27.262 4.779 1 88.55 ? H81 MYS 610 A 1 HETATM 32 H H82 MYS . . . M 8 -4.596 -28.42 3.726 1 88.55 ? H82 MYS 610 A 1 HETATM 33 H H91 MYS . . . M 8 -1.996 -28.501 4.264 1 97.08 ? H91 MYS 610 A 1 HETATM 34 H H92 MYS . . . M 8 -3.058 -29.575 4.738 1 97.08 ? H92 MYS 610 A 1 HETATM 35 H H101 MYS . . . M 8 -2.349 -27.26 6.224 1 93.92 ? H101 MYS 610 A 1 HETATM 36 H H102 MYS . . . M 8 -3.46 -28.29 6.69 1 93.92 ? H102 MYS 610 A 1 HETATM 37 H H111 MYS . . . M 8 -1.742 -29.994 6.669 1 101.62 ? H111 MYS 610 A 1 HETATM 38 H H112 MYS . . . M 8 -0.685 -28.833 6.469 1 101.62 ? H112 MYS 610 A 1 HETATM 39 H H121 MYS . . . M 8 -2.392 -28.533 8.654 1 103.12 ? H121 MYS 610 A 1 HETATM 40 H H122 MYS . . . M 8 -1.287 -29.656 8.804 1 103.12 ? H122 MYS 610 A 1 HETATM 41 H H131 MYS . . . M 8 0.405 -28.091 8.47 1 104.11 ? H131 MYS 610 A 1 HETATM 42 H H132 MYS . . . M 8 -0.662 -26.959 8.177 1 104.11 ? H132 MYS 610 A 1 HETATM 43 H H141 MYS . . . M 8 0.038 -26.66 10.36 1 106.39 ? H141 MYS 610 A 1 HETATM 44 H H142 MYS . . . M 8 -1.445 -27.205 10.429 1 106.39 ? H142 MYS 610 A 1 HETATM 45 H H151 MYS . . . M 8 -0.626 -29.379 10.844 1 93.77 ? H151 MYS 610 A 1 HETATM 46 H H152 MYS . . . M 8 0.858 -28.83 10.78 1 93.77 ? H152 MYS 610 A 1 HETATM 47 H H153 MYS . . . M 8 -0.101 -28.385 11.96 1 93.77 ? H153 MYS 610 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 47 #