data_5B70 # _model_server_result.job_id 8r12Gt7-KE9tKduCjOE7DA _model_server_result.datetime_utc '2024-12-22 08:59:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5b70 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 5B70 # _exptl.entry_id 5B70 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5B70 _cell.length_a 141.375 _cell.length_b 141.375 _cell.length_c 109.664 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5B70 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,F,G,J 1 1 B,C,E,H,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5B70 _atom_sites.fract_transf_matrix[1][1] 0.007073 _atom_sites.fract_transf_matrix[1][2] 0.004084 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008168 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009119 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GOL C 1 401 302 GOL GOL . F 2 GOL D 1 401 302 GOL GOL . G 3 HOH A 1 401 338 HOH HOH . G 3 HOH A 2 402 331 HOH HOH . G 3 HOH A 3 403 330 HOH HOH . G 3 HOH A 4 404 320 HOH HOH . G 3 HOH A 5 405 314 HOH HOH . G 3 HOH A 6 406 312 HOH HOH . G 3 HOH A 7 407 328 HOH HOH . G 3 HOH A 8 408 323 HOH HOH . G 3 HOH A 9 409 310 HOH HOH . G 3 HOH A 10 410 316 HOH HOH . G 3 HOH A 11 411 332 HOH HOH . G 3 HOH A 12 412 321 HOH HOH . G 3 HOH A 13 413 313 HOH HOH . G 3 HOH A 14 414 324 HOH HOH . G 3 HOH A 15 415 308 HOH HOH . G 3 HOH A 16 416 307 HOH HOH . G 3 HOH A 17 417 334 HOH HOH . G 3 HOH A 18 418 304 HOH HOH . G 3 HOH A 19 419 337 HOH HOH . G 3 HOH A 20 420 325 HOH HOH . G 3 HOH A 21 421 302 HOH HOH . G 3 HOH A 22 422 303 HOH HOH . G 3 HOH A 23 423 311 HOH HOH . G 3 HOH A 24 424 305 HOH HOH . G 3 HOH A 25 425 335 HOH HOH . G 3 HOH A 26 426 315 HOH HOH . G 3 HOH A 27 427 306 HOH HOH . G 3 HOH A 28 428 333 HOH HOH . G 3 HOH A 29 429 336 HOH HOH . G 3 HOH A 30 430 329 HOH HOH . G 3 HOH A 31 431 326 HOH HOH . G 3 HOH A 32 432 319 HOH HOH . G 3 HOH A 33 433 317 HOH HOH . G 3 HOH A 34 434 318 HOH HOH . G 3 HOH A 35 435 305 HOH HOH . G 3 HOH A 36 436 322 HOH HOH . G 3 HOH A 37 437 310 HOH HOH . G 3 HOH A 38 438 309 HOH HOH . H 3 HOH B 1 401 332 HOH HOH . H 3 HOH B 2 402 330 HOH HOH . H 3 HOH B 3 403 328 HOH HOH . H 3 HOH B 4 404 324 HOH HOH . H 3 HOH B 5 405 319 HOH HOH . H 3 HOH B 6 406 305 HOH HOH . H 3 HOH B 7 407 303 HOH HOH . H 3 HOH B 8 408 322 HOH HOH . H 3 HOH B 9 409 311 HOH HOH . H 3 HOH B 10 410 318 HOH HOH . H 3 HOH B 11 411 344 HOH HOH . H 3 HOH B 12 412 309 HOH HOH . H 3 HOH B 13 413 325 HOH HOH . H 3 HOH B 14 414 326 HOH HOH . H 3 HOH B 15 415 316 HOH HOH . H 3 HOH B 16 416 315 HOH HOH . H 3 HOH B 17 417 320 HOH HOH . H 3 HOH B 18 418 317 HOH HOH . H 3 HOH B 19 419 321 HOH HOH . H 3 HOH B 20 420 314 HOH HOH . H 3 HOH B 21 421 313 HOH HOH . H 3 HOH B 22 422 330 HOH HOH . H 3 HOH B 23 423 306 HOH HOH . H 3 HOH B 24 424 307 HOH HOH . H 3 HOH B 25 425 310 HOH HOH . H 3 HOH B 26 426 323 HOH HOH . H 3 HOH B 27 427 331 HOH HOH . H 3 HOH B 28 428 365 HOH HOH . H 3 HOH B 29 429 304 HOH HOH . H 3 HOH B 30 430 308 HOH HOH . H 3 HOH B 31 431 327 HOH HOH . H 3 HOH B 32 432 312 HOH HOH . I 3 HOH C 1 501 357 HOH HOH . I 3 HOH C 2 502 362 HOH HOH . I 3 HOH C 3 503 366 HOH HOH . I 3 HOH C 4 504 339 HOH HOH . I 3 HOH C 5 505 328 HOH HOH . I 3 HOH C 6 506 327 HOH HOH . I 3 HOH C 7 507 313 HOH HOH . I 3 HOH C 8 508 345 HOH HOH . I 3 HOH C 9 509 316 HOH HOH . I 3 HOH C 10 510 353 HOH HOH . I 3 HOH C 11 511 319 HOH HOH . I 3 HOH C 12 512 367 HOH HOH . I 3 HOH C 13 513 314 HOH HOH . I 3 HOH C 14 514 315 HOH HOH . I 3 HOH C 15 515 323 HOH HOH . I 3 HOH C 16 516 302 HOH HOH . I 3 HOH C 17 517 358 HOH HOH . I 3 HOH C 18 518 305 HOH HOH . I 3 HOH C 19 519 336 HOH HOH . I 3 HOH C 20 520 320 HOH HOH . I 3 HOH C 21 521 335 HOH HOH . I 3 HOH C 22 522 309 HOH HOH . I 3 HOH C 23 523 333 HOH HOH . I 3 HOH C 24 524 332 HOH HOH . I 3 HOH C 25 525 324 HOH HOH . I 3 HOH C 26 526 311 HOH HOH . I 3 HOH C 27 527 321 HOH HOH . I 3 HOH C 28 528 352 HOH HOH . I 3 HOH C 29 529 307 HOH HOH . I 3 HOH C 30 530 341 HOH HOH . I 3 HOH C 31 531 308 HOH HOH . I 3 HOH C 32 532 347 HOH HOH . I 3 HOH C 33 533 343 HOH HOH . I 3 HOH C 34 534 364 HOH HOH . I 3 HOH C 35 535 359 HOH HOH . I 3 HOH C 36 536 310 HOH HOH . I 3 HOH C 37 537 317 HOH HOH . I 3 HOH C 38 538 342 HOH HOH . I 3 HOH C 39 539 346 HOH HOH . I 3 HOH C 40 540 338 HOH HOH . I 3 HOH C 41 541 318 HOH HOH . I 3 HOH C 42 542 354 HOH HOH . I 3 HOH C 43 543 322 HOH HOH . I 3 HOH C 44 544 325 HOH HOH . I 3 HOH C 45 545 348 HOH HOH . I 3 HOH C 46 546 350 HOH HOH . I 3 HOH C 47 547 351 HOH HOH . I 3 HOH C 48 548 329 HOH HOH . I 3 HOH C 49 549 337 HOH HOH . I 3 HOH C 50 550 349 HOH HOH . I 3 HOH C 51 551 334 HOH HOH . I 3 HOH C 52 552 326 HOH HOH . I 3 HOH C 53 553 331 HOH HOH . I 3 HOH C 54 554 306 HOH HOH . I 3 HOH C 55 555 303 HOH HOH . I 3 HOH C 56 556 356 HOH HOH . I 3 HOH C 57 557 363 HOH HOH . I 3 HOH C 58 558 340 HOH HOH . I 3 HOH C 59 559 312 HOH HOH . I 3 HOH C 60 560 360 HOH HOH . I 3 HOH C 61 561 304 HOH HOH . I 3 HOH C 62 562 355 HOH HOH . I 3 HOH C 63 563 361 HOH HOH . I 3 HOH C 64 564 329 HOH HOH . J 3 HOH D 1 501 318 HOH HOH . J 3 HOH D 2 502 315 HOH HOH . J 3 HOH D 3 503 337 HOH HOH . J 3 HOH D 4 504 326 HOH HOH . J 3 HOH D 5 505 339 HOH HOH . J 3 HOH D 6 506 338 HOH HOH . J 3 HOH D 7 507 341 HOH HOH . J 3 HOH D 8 508 324 HOH HOH . J 3 HOH D 9 509 329 HOH HOH . J 3 HOH D 10 510 307 HOH HOH . J 3 HOH D 11 511 335 HOH HOH . J 3 HOH D 12 512 334 HOH HOH . J 3 HOH D 13 513 327 HOH HOH . J 3 HOH D 14 514 308 HOH HOH . J 3 HOH D 15 515 320 HOH HOH . J 3 HOH D 16 516 303 HOH HOH . J 3 HOH D 17 517 317 HOH HOH . J 3 HOH D 18 518 309 HOH HOH . J 3 HOH D 19 519 304 HOH HOH . J 3 HOH D 20 520 316 HOH HOH . J 3 HOH D 21 521 330 HOH HOH . J 3 HOH D 22 522 325 HOH HOH . J 3 HOH D 23 523 306 HOH HOH . J 3 HOH D 24 524 313 HOH HOH . J 3 HOH D 25 525 333 HOH HOH . J 3 HOH D 26 526 314 HOH HOH . J 3 HOH D 27 527 332 HOH HOH . J 3 HOH D 28 528 312 HOH HOH . J 3 HOH D 29 529 323 HOH HOH . J 3 HOH D 30 530 342 HOH HOH . J 3 HOH D 31 531 311 HOH HOH . J 3 HOH D 32 532 328 HOH HOH . J 3 HOH D 33 533 321 HOH HOH . J 3 HOH D 34 534 340 HOH HOH . J 3 HOH D 35 535 319 HOH HOH . J 3 HOH D 36 536 331 HOH HOH . J 3 HOH D 37 537 336 HOH HOH . J 3 HOH D 38 538 322 HOH HOH . J 3 HOH D 39 539 327 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 2 -4.259 99.393 141.143 1 51.87 ? C1 GOL 401 D 1 HETATM 2 O O1 GOL . . . F 2 -4.921 98.455 140.328 1 53.61 ? O1 GOL 401 D 1 HETATM 3 C C2 GOL . . . F 2 -2.882 98.857 141.517 1 55.96 ? C2 GOL 401 D 1 HETATM 4 O O2 GOL . . . F 2 -1.973 99.932 141.573 1 62.4 ? O2 GOL 401 D 1 HETATM 5 C C3 GOL . . . F 2 -2.941 98.186 142.885 1 61.36 ? C3 GOL 401 D 1 HETATM 6 O O3 GOL . . . F 2 -1.658 97.714 143.237 1 67.26 ? O3 GOL 401 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 41 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #