data_5B78 # _model_server_result.job_id yI4HJIzZbk76PZ7-KnmDRw _model_server_result.datetime_utc '2024-12-12 14:31:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5b78 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 5B78 # _exptl.entry_id 5B78 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5B78 _cell.length_a 47.671 _cell.length_b 48.238 _cell.length_c 76.366 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5B78 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C GLY 13 B GLY 13 1_555 B N KCR 14 B KCR 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 B C KCR 14 B KCR 14 1_555 B N ALA 15 B ALA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A SG CYS 17 A CYS 209 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc2 A SG CYS 20 A CYS 212 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc3 A SG CYS 38 A CYS 230 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc4 A SG CYS 41 A CYS 233 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc5 A ND1 HIS 46 A HIS 238 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc6 A SG CYS 49 A CYS 241 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc7 A SG CYS 67 A CYS 259 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc8 A SG CYS 70 A CYS 262 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc9 A SG CYS 73 A CYS 265 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc10 A SG CYS 76 A CYS 268 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc11 A SG CYS 89 A CYS 281 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc12 A SG CYS 92 A CYS 284 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc13 A ND1 HIS 97 A HIS 289 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc14 A SG CYS 100 A CYS 292 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc15 A SG CYS 115 A CYS 307 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc16 A SG CYS 118 A CYS 310 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5B78 _atom_sites.fract_transf_matrix[1][1] 0.020977 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020731 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013095 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 401 401 ZN ZN . D 3 ZN A 1 402 402 ZN ZN . E 3 ZN A 1 403 403 ZN ZN . F 3 ZN A 1 404 404 ZN ZN . G 4 HOH A 1 501 155 HOH HOH . G 4 HOH A 2 502 211 HOH HOH . G 4 HOH A 3 503 105 HOH HOH . G 4 HOH A 4 504 125 HOH HOH . G 4 HOH A 5 505 177 HOH HOH . G 4 HOH A 6 506 142 HOH HOH . G 4 HOH A 7 507 140 HOH HOH . G 4 HOH A 8 508 48 HOH HOH . G 4 HOH A 9 509 62 HOH HOH . G 4 HOH A 10 510 45 HOH HOH . G 4 HOH A 11 511 100 HOH HOH . G 4 HOH A 12 512 202 HOH HOH . G 4 HOH A 13 513 214 HOH HOH . G 4 HOH A 14 514 52 HOH HOH . G 4 HOH A 15 515 94 HOH HOH . G 4 HOH A 16 516 228 HOH HOH . G 4 HOH A 17 517 29 HOH HOH . G 4 HOH A 18 518 121 HOH HOH . G 4 HOH A 19 519 180 HOH HOH . G 4 HOH A 20 520 179 HOH HOH . G 4 HOH A 21 521 3 HOH HOH . G 4 HOH A 22 522 50 HOH HOH . G 4 HOH A 23 523 68 HOH HOH . G 4 HOH A 24 524 153 HOH HOH . G 4 HOH A 25 525 15 HOH HOH . G 4 HOH A 26 526 55 HOH HOH . G 4 HOH A 27 527 23 HOH HOH . G 4 HOH A 28 528 33 HOH HOH . G 4 HOH A 29 529 134 HOH HOH . G 4 HOH A 30 530 172 HOH HOH . G 4 HOH A 31 531 229 HOH HOH . G 4 HOH A 32 532 81 HOH HOH . G 4 HOH A 33 533 132 HOH HOH . G 4 HOH A 34 534 116 HOH HOH . G 4 HOH A 35 535 53 HOH HOH . G 4 HOH A 36 536 37 HOH HOH . G 4 HOH A 37 537 35 HOH HOH . G 4 HOH A 38 538 104 HOH HOH . G 4 HOH A 39 539 173 HOH HOH . G 4 HOH A 40 540 133 HOH HOH . G 4 HOH A 41 541 6 HOH HOH . G 4 HOH A 42 542 187 HOH HOH . G 4 HOH A 43 543 164 HOH HOH . G 4 HOH A 44 544 174 HOH HOH . G 4 HOH A 45 545 83 HOH HOH . G 4 HOH A 46 546 5 HOH HOH . G 4 HOH A 47 547 18 HOH HOH . G 4 HOH A 48 548 78 HOH HOH . G 4 HOH A 49 549 130 HOH HOH . G 4 HOH A 50 550 58 HOH HOH . G 4 HOH A 51 551 60 HOH HOH . G 4 HOH A 52 552 13 HOH HOH . G 4 HOH A 53 553 8 HOH HOH . G 4 HOH A 54 554 2 HOH HOH . G 4 HOH A 55 555 11 HOH HOH . G 4 HOH A 56 556 16 HOH HOH . G 4 HOH A 57 557 101 HOH HOH . G 4 HOH A 58 558 31 HOH HOH . G 4 HOH A 59 559 165 HOH HOH . G 4 HOH A 60 560 25 HOH HOH . G 4 HOH A 61 561 40 HOH HOH . G 4 HOH A 62 562 4 HOH HOH . G 4 HOH A 63 563 103 HOH HOH . G 4 HOH A 64 564 99 HOH HOH . G 4 HOH A 65 565 71 HOH HOH . G 4 HOH A 66 566 162 HOH HOH . G 4 HOH A 67 567 109 HOH HOH . G 4 HOH A 68 568 44 HOH HOH . G 4 HOH A 69 569 129 HOH HOH . G 4 HOH A 70 570 17 HOH HOH . G 4 HOH A 71 571 128 HOH HOH . G 4 HOH A 72 572 7 HOH HOH . G 4 HOH A 73 573 124 HOH HOH . G 4 HOH A 74 574 119 HOH HOH . G 4 HOH A 75 575 22 HOH HOH . G 4 HOH A 76 576 189 HOH HOH . G 4 HOH A 77 577 21 HOH HOH . G 4 HOH A 78 578 97 HOH HOH . G 4 HOH A 79 579 59 HOH HOH . G 4 HOH A 80 580 42 HOH HOH . G 4 HOH A 81 581 212 HOH HOH . G 4 HOH A 82 582 61 HOH HOH . G 4 HOH A 83 583 1 HOH HOH . G 4 HOH A 84 584 69 HOH HOH . G 4 HOH A 85 585 167 HOH HOH . G 4 HOH A 86 586 175 HOH HOH . G 4 HOH A 87 587 226 HOH HOH . G 4 HOH A 88 588 66 HOH HOH . G 4 HOH A 89 589 54 HOH HOH . G 4 HOH A 90 590 32 HOH HOH . G 4 HOH A 91 591 86 HOH HOH . G 4 HOH A 92 592 73 HOH HOH . G 4 HOH A 93 593 10 HOH HOH . G 4 HOH A 94 594 225 HOH HOH . G 4 HOH A 95 595 183 HOH HOH . G 4 HOH A 96 596 149 HOH HOH . G 4 HOH A 97 597 43 HOH HOH . G 4 HOH A 98 598 38 HOH HOH . G 4 HOH A 99 599 41 HOH HOH . G 4 HOH A 100 600 70 HOH HOH . G 4 HOH A 101 601 65 HOH HOH . G 4 HOH A 102 602 197 HOH HOH . G 4 HOH A 103 603 27 HOH HOH . G 4 HOH A 104 604 39 HOH HOH . G 4 HOH A 105 605 118 HOH HOH . G 4 HOH A 106 606 82 HOH HOH . G 4 HOH A 107 607 72 HOH HOH . G 4 HOH A 108 608 194 HOH HOH . G 4 HOH A 109 609 63 HOH HOH . G 4 HOH A 110 610 28 HOH HOH . G 4 HOH A 111 611 113 HOH HOH . G 4 HOH A 112 612 80 HOH HOH . G 4 HOH A 113 613 227 HOH HOH . G 4 HOH A 114 614 112 HOH HOH . G 4 HOH A 115 615 122 HOH HOH . G 4 HOH A 116 616 117 HOH HOH . G 4 HOH A 117 617 203 HOH HOH . G 4 HOH A 118 618 93 HOH HOH . G 4 HOH A 119 619 170 HOH HOH . G 4 HOH A 120 620 106 HOH HOH . G 4 HOH A 121 621 200 HOH HOH . G 4 HOH A 122 622 185 HOH HOH . G 4 HOH A 123 623 181 HOH HOH . G 4 HOH A 124 624 198 HOH HOH . G 4 HOH A 125 625 151 HOH HOH . G 4 HOH A 126 626 209 HOH HOH . G 4 HOH A 127 627 188 HOH HOH . G 4 HOH A 128 628 210 HOH HOH . G 4 HOH A 129 629 36 HOH HOH . G 4 HOH A 130 630 205 HOH HOH . G 4 HOH A 131 631 96 HOH HOH . G 4 HOH A 132 632 178 HOH HOH . G 4 HOH A 133 633 163 HOH HOH . G 4 HOH A 134 634 30 HOH HOH . G 4 HOH A 135 635 114 HOH HOH . G 4 HOH A 136 636 208 HOH HOH . G 4 HOH A 137 637 171 HOH HOH . G 4 HOH A 138 638 76 HOH HOH . G 4 HOH A 139 639 192 HOH HOH . G 4 HOH A 140 640 182 HOH HOH . G 4 HOH A 141 641 224 HOH HOH . G 4 HOH A 142 642 144 HOH HOH . G 4 HOH A 143 643 85 HOH HOH . G 4 HOH A 144 644 160 HOH HOH . G 4 HOH A 145 645 120 HOH HOH . G 4 HOH A 146 646 135 HOH HOH . G 4 HOH A 147 647 24 HOH HOH . G 4 HOH A 148 648 186 HOH HOH . G 4 HOH A 149 649 176 HOH HOH . G 4 HOH A 150 650 166 HOH HOH . G 4 HOH A 151 651 88 HOH HOH . G 4 HOH A 152 652 141 HOH HOH . G 4 HOH A 153 653 150 HOH HOH . G 4 HOH A 154 654 217 HOH HOH . G 4 HOH A 155 655 218 HOH HOH . G 4 HOH A 156 656 213 HOH HOH . G 4 HOH A 157 657 46 HOH HOH . G 4 HOH A 158 658 79 HOH HOH . G 4 HOH A 159 659 223 HOH HOH . G 4 HOH A 160 660 57 HOH HOH . G 4 HOH A 161 661 195 HOH HOH . G 4 HOH A 162 662 74 HOH HOH . G 4 HOH A 163 663 215 HOH HOH . G 4 HOH A 164 664 206 HOH HOH . G 4 HOH A 165 665 199 HOH HOH . G 4 HOH A 166 666 131 HOH HOH . G 4 HOH A 167 667 161 HOH HOH . G 4 HOH A 168 668 75 HOH HOH . G 4 HOH A 169 669 145 HOH HOH . G 4 HOH A 170 670 111 HOH HOH . G 4 HOH A 171 671 159 HOH HOH . G 4 HOH A 172 672 148 HOH HOH . G 4 HOH A 173 673 196 HOH HOH . G 4 HOH A 174 674 64 HOH HOH . G 4 HOH A 175 675 146 HOH HOH . G 4 HOH A 176 676 19 HOH HOH . G 4 HOH A 177 677 220 HOH HOH . G 4 HOH A 178 678 26 HOH HOH . G 4 HOH A 179 679 89 HOH HOH . G 4 HOH A 180 680 92 HOH HOH . G 4 HOH A 181 681 98 HOH HOH . G 4 HOH A 182 682 184 HOH HOH . G 4 HOH A 183 683 91 HOH HOH . G 4 HOH A 184 684 222 HOH HOH . G 4 HOH A 185 685 154 HOH HOH . G 4 HOH A 186 686 156 HOH HOH . G 4 HOH A 187 687 221 HOH HOH . H 4 HOH B 1 101 67 HOH HOH . H 4 HOH B 2 102 14 HOH HOH . H 4 HOH B 3 103 123 HOH HOH . H 4 HOH B 4 104 147 HOH HOH . H 4 HOH B 5 105 9 HOH HOH . H 4 HOH B 6 106 95 HOH HOH . H 4 HOH B 7 107 47 HOH HOH . H 4 HOH B 8 108 51 HOH HOH . H 4 HOH B 9 109 107 HOH HOH . H 4 HOH B 10 110 115 HOH HOH . H 4 HOH B 11 111 77 HOH HOH . H 4 HOH B 12 112 108 HOH HOH . H 4 HOH B 13 113 49 HOH HOH . H 4 HOH B 14 114 102 HOH HOH . H 4 HOH B 15 115 90 HOH HOH . H 4 HOH B 16 116 12 HOH HOH . H 4 HOH B 17 117 168 HOH HOH . H 4 HOH B 18 118 169 HOH HOH . H 4 HOH B 19 119 87 HOH HOH . H 4 HOH B 20 120 191 HOH HOH . H 4 HOH B 21 121 126 HOH HOH . H 4 HOH B 22 122 216 HOH HOH . H 4 HOH B 23 123 219 HOH HOH . H 4 HOH B 24 124 138 HOH HOH . H 4 HOH B 25 125 190 HOH HOH . H 4 HOH B 26 126 158 HOH HOH . H 4 HOH B 27 127 84 HOH HOH . H 4 HOH B 28 128 139 HOH HOH . H 4 HOH B 29 129 157 HOH HOH . H 4 HOH B 30 130 207 HOH HOH . H 4 HOH B 31 131 20 HOH HOH . H 4 HOH B 32 132 127 HOH HOH . H 4 HOH B 33 133 204 HOH HOH . H 4 HOH B 34 134 136 HOH HOH . H 4 HOH B 35 135 34 HOH HOH . H 4 HOH B 36 136 193 HOH HOH . H 4 HOH B 37 137 152 HOH HOH . H 4 HOH B 38 138 201 HOH HOH . H 4 HOH B 39 139 56 HOH HOH . H 4 HOH B 40 140 110 HOH HOH . H 4 HOH B 41 141 137 HOH HOH . H 4 HOH B 42 142 143 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 25.258 _atom_site.Cartn_y -8.103 _atom_site.Cartn_z 4.364 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 12.76 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 113 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #