data_5B7S
#
_model_server_result.job_id            Kkjzw7gDfwCNaf37csp8Mw 
_model_server_result.datetime_utc      '2024-11-05 01:17:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5b7s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    5B7S 
#
_exptl.entry_id    5B7S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5B7S 
_cell.length_a            67.006 
_cell.length_b            92.527 
_cell.length_c            145.444 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5B7S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C HIS 235 A HIS 215 1_555 A N LLP 236 A LLP 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale2 A C LLP 236 A LLP 216 1_555 A N GLY 237 A GLY 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale3 B C HIS 235 B HIS 215 1_555 B N LLP 236 B LLP 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale4 B C LLP 236 B LLP 216 1_555 B N GLY 237 B GLY 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5B7S 
_atom_sites.fract_transf_matrix[1][1]    0.014924 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010808 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006875 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 401 1 GOL GOL . 
D 2 GOL B 1 401 2 GOL GOL . 
E 3 HOH A 1 501 27 HOH HOH . 
E 3 HOH A 2 502 17 HOH HOH . 
E 3 HOH A 3 503 63 HOH HOH . 
E 3 HOH A 4 504 95 HOH HOH . 
E 3 HOH A 5 505 23 HOH HOH . 
E 3 HOH A 6 506 81 HOH HOH . 
E 3 HOH A 7 507 66 HOH HOH . 
E 3 HOH A 8 508 84 HOH HOH . 
E 3 HOH A 9 509 21 HOH HOH . 
E 3 HOH A 10 510 20 HOH HOH . 
E 3 HOH A 11 511 90 HOH HOH . 
E 3 HOH A 12 512 71 HOH HOH . 
E 3 HOH A 13 513 47 HOH HOH . 
E 3 HOH A 14 514 49 HOH HOH . 
E 3 HOH A 15 515 40 HOH HOH . 
E 3 HOH A 16 516 73 HOH HOH . 
E 3 HOH A 17 517 1 HOH HOH . 
E 3 HOH A 18 518 96 HOH HOH . 
E 3 HOH A 19 519 65 HOH HOH . 
E 3 HOH A 20 520 51 HOH HOH . 
E 3 HOH A 21 521 41 HOH HOH . 
E 3 HOH A 22 522 75 HOH HOH . 
E 3 HOH A 23 523 89 HOH HOH . 
E 3 HOH A 24 524 102 HOH HOH . 
E 3 HOH A 25 525 2 HOH HOH . 
E 3 HOH A 26 526 6 HOH HOH . 
E 3 HOH A 27 527 83 HOH HOH . 
E 3 HOH A 28 528 82 HOH HOH . 
E 3 HOH A 29 529 50 HOH HOH . 
E 3 HOH A 30 530 28 HOH HOH . 
E 3 HOH A 31 531 61 HOH HOH . 
E 3 HOH A 32 532 99 HOH HOH . 
E 3 HOH A 33 533 74 HOH HOH . 
E 3 HOH A 34 534 76 HOH HOH . 
E 3 HOH A 35 535 94 HOH HOH . 
E 3 HOH A 36 536 3 HOH HOH . 
E 3 HOH A 37 537 100 HOH HOH . 
E 3 HOH A 38 538 18 HOH HOH . 
E 3 HOH A 39 539 80 HOH HOH . 
E 3 HOH A 40 540 44 HOH HOH . 
E 3 HOH A 41 541 36 HOH HOH . 
E 3 HOH A 42 542 64 HOH HOH . 
E 3 HOH A 43 543 92 HOH HOH . 
E 3 HOH A 44 544 16 HOH HOH . 
E 3 HOH A 45 545 15 HOH HOH . 
E 3 HOH A 46 546 56 HOH HOH . 
E 3 HOH A 47 547 62 HOH HOH . 
E 3 HOH A 48 548 24 HOH HOH . 
E 3 HOH A 49 549 55 HOH HOH . 
E 3 HOH A 50 550 85 HOH HOH . 
E 3 HOH A 51 551 57 HOH HOH . 
E 3 HOH A 52 552 48 HOH HOH . 
E 3 HOH A 53 553 52 HOH HOH . 
E 3 HOH A 54 554 86 HOH HOH . 
E 3 HOH A 55 555 19 HOH HOH . 
E 3 HOH A 56 556 22 HOH HOH . 
E 3 HOH A 57 557 26 HOH HOH . 
F 3 HOH B 1 501 8 HOH HOH . 
F 3 HOH B 2 502 34 HOH HOH . 
F 3 HOH B 3 503 54 HOH HOH . 
F 3 HOH B 4 504 98 HOH HOH . 
F 3 HOH B 5 505 79 HOH HOH . 
F 3 HOH B 6 506 32 HOH HOH . 
F 3 HOH B 7 507 69 HOH HOH . 
F 3 HOH B 8 508 58 HOH HOH . 
F 3 HOH B 9 509 70 HOH HOH . 
F 3 HOH B 10 510 72 HOH HOH . 
F 3 HOH B 11 511 78 HOH HOH . 
F 3 HOH B 12 512 29 HOH HOH . 
F 3 HOH B 13 513 67 HOH HOH . 
F 3 HOH B 14 514 5 HOH HOH . 
F 3 HOH B 15 515 87 HOH HOH . 
F 3 HOH B 16 516 39 HOH HOH . 
F 3 HOH B 17 517 45 HOH HOH . 
F 3 HOH B 18 518 42 HOH HOH . 
F 3 HOH B 19 519 77 HOH HOH . 
F 3 HOH B 20 520 14 HOH HOH . 
F 3 HOH B 21 521 59 HOH HOH . 
F 3 HOH B 22 522 60 HOH HOH . 
F 3 HOH B 23 523 68 HOH HOH . 
F 3 HOH B 24 524 10 HOH HOH . 
F 3 HOH B 25 525 91 HOH HOH . 
F 3 HOH B 26 526 43 HOH HOH . 
F 3 HOH B 27 527 88 HOH HOH . 
F 3 HOH B 28 528 30 HOH HOH . 
F 3 HOH B 29 529 46 HOH HOH . 
F 3 HOH B 30 530 11 HOH HOH . 
F 3 HOH B 31 531 25 HOH HOH . 
F 3 HOH B 32 532 13 HOH HOH . 
F 3 HOH B 33 533 9 HOH HOH . 
F 3 HOH B 34 534 31 HOH HOH . 
F 3 HOH B 35 535 35 HOH HOH . 
F 3 HOH B 36 536 4 HOH HOH . 
F 3 HOH B 37 537 53 HOH HOH . 
F 3 HOH B 38 538 7 HOH HOH . 
F 3 HOH B 39 539 101 HOH HOH . 
F 3 HOH B 40 540 33 HOH HOH . 
F 3 HOH B 41 541 93 HOH HOH . 
F 3 HOH B 42 542 37 HOH HOH . 
F 3 HOH B 43 543 38 HOH HOH . 
F 3 HOH B 44 544 103 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 41.175 -22.605 -16.098 1 64.59 ? C1 GOL 401 A 1 
HETATM 2 O O1 GOL . . . C 2 40.769 -22.82 -14.719 1 65.25 ? O1 GOL 401 A 1 
HETATM 3 C C2 GOL . . . C 2 42.231 -21.509 -16.254 1 59.23 ? C2 GOL 401 A 1 
HETATM 4 O O2 GOL . . . C 2 41.784 -20.298 -15.612 1 56.31 ? O2 GOL 401 A 1 
HETATM 5 C C3 GOL . . . C 2 43.545 -21.988 -15.638 1 55.63 ? C3 GOL 401 A 1 
HETATM 6 O O3 GOL . . . C 2 44.468 -20.905 -15.492 1 51.59 ? O3 GOL 401 A 1 
#
_model_server_stats.io_time_ms              104 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#